Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                        ----------->GT1                                                  <---------ZAT14                                            <---------ANAC58                                            <---------ANAC58                                            <---------ANAC46                                           <-------TEIL                                         --------->ARR14(2)                                         <---------ARR14(2)                                         <---------GLK1(2)                                        xxxxxxxxxxxxxxxx>smallRNA(i)                                        xxxxxxxxxxxxxxxx>smallRNA(s)                                    xxxxxxxxxxxxxxxx>smallRNA(i)                                    xxxxxxxxxxxxxxxx>smallRNA(s)                                   xxxxxxxxxxxxxxxx>smallRNA(i)                                   <xxxxxxxxxxxxxxxxsmallRNA(i)                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                 xxxxxxxxxxxxxxxx>smallRNA(i)                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                xxxxxxxxxxxxxxxx>smallRNA(i)                                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                               xxxxxxxxxxxxxxxx>smallRNA(i)                               xxxxxxxxxxxxxxxx>smallRNA(s)                              xxxxxxxxxxxxxxxx>smallRNA(i)                              xxxxxxxxxxxxxxxx>smallRNA(s)                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                 -                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                  <                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                         <--------                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                           ---------                             xxxxxxxxxxxxxxxx>smallRNA(i)        --------->YAB1             ---------     ----------->GT1         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                     <---------AHL20(2) -------YAB1               xxxxxxxxxxxxxxxx>smallRNA(i)    <---------ANAC55(2) --------->At5g28300 -- ----->AHL20(2)          <-----------GT1<xxxxxxxxxxxxxxxxsmallRNA(i)   --------->AHL20(2)  <---------AHL20(2) ------AHL20(2)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    --------->ANAC55(2)----------->GT1  <----- -RAV1(1)        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <---------ZAT6   --------->YAB1  --------->AHL20(2)   ttaataggggttaaaacttcagttttttaacaattgtctcatggattcgtggtatagtgttacttaataacaattataaactgtaaaatataaatatttt  18424200                                                                                             <-------                                                                                             <-------      <---------AHL20(2)                                                                     --------     --------->AHL20(2)                                                                      --------     <---------AHL20(1)                                                                      --------     --------->AHL20(1)                                                                     <--------     <---------AHL20(2)                                                                     ---------  --------->YAB1                 <----------DOF2                                        <---------MYB46(3) -------->AHL20(2)            <-----------GT1          --------->LBD16                 <---------WOX13(1) ---------AHL20(2)        --------->AHL20(1)         <---------LBD16                 --------->ATHB12 -AHL20(1)                <---------AHL20(1)         ----------->RAV1(2)  --------->GLK1(2)<--------- >AHL20(2)              <---------AHL20(1)     <---------ATHB12           --------->ARR11(3)<-------- >AHL20(1)              --------->AHL20(1)  --------->AHL20(2)      ----------->GT1  <---------ICU4 ------->YAB1      --------->AHL20(2)       <---------AHL20(2)      <-------GAMYB   --------->ICU4 ----AHL20(2)      <---------AHL20(2)      --------->AHL20(2)      ----------->GT1  <---------YAB1   ataaaaataaaatttgcaaattttaatatatattacttttaaaaaataaatcatcccctggtataccgagggttaaaatctagtccatgattgttacggc  18424300   ------>MYB83   ------>MYB46(1) <---------MYB46(2) <---------MYB59 --ANAC55(2) --RAP2.6(2)                                                                             ---------->DOF2 ->ANAC58                                                                              --------->ANAC58 ->ANAC55(2)                  ----------->GT1                                          --------->ANAC58 ->ANAC58                    <---------TOE2(2)                   <---------MYB46(3)--------->ANAC58 -At5g28300                  <---------TOE1(3)       --------->CCA1(2)   --------->AHL20(2) >RAP2.6(3)        ---------->DOF2     <-----------RAV1(1)    --------->ALFIN1     --------->ANAC58 --GT1      --------->YAB1   <---------TOE2(3)      <---------ARR11(3)   <---------AHL20(2) -LBD16  --------->ANAC55(2) <---------TOE1(2)      --------->AHL20(1)  --------->AHL20(2)   ataccaaacttacatgataactaaagagtcttaggttaaaactgtggtagtcaatatatgaagagtgttgttgatttaatttgcgaagcaagaaagaact  18424400                                                              <-------MYC4                                                              ------->PIF5                                                              <-------PIF4                                                              <-------PIF5                                                              ------->PIF4                                                              <-------MYC3                                                              ------->MYC2                                                              <-------MYC2                                                              ------->MYC4                                                              ------->MYC3                                                             <---------TGA1a                                                             --------->TGA1a                                                             --------->ANAC58                                                             --------->ANAC55(2)                                                             <---------O2                                                             <---------ANAC55(2)                                                             --------->O2                                                             --------->ANAC58                     --------->GLK1(2)                     <------------OsbHLH66           --------->ANAC46                ---------->DOF2                    ====================bZIP_DOF          <-----------GT1              <---------HSFB2a(2)    <---------TOE1(3)    <---------ZAT2            <---------AHL20(2)        --------->ARR11(3)  <---------YAB1         ---------->DOF2                  --------->AHL20(2)   aaaattttaagacattccaaaagactctgtatcattctgaaggtttgagcttggaaagcgagcacgtgagtcgctcgtgaaactatataatttacgaaaa  18424500                                                <---------AHL20(2)                                                --------->AHL20(2)                                               <---------AHL20(2)                                               <---------AHL20(1)                                         --------->ANAC46                                      --------->ANAC46                   <---------YAB1     --------->ANAC58                 <---------ZAT6       --------->ANAC58         <------NtERF2               <---------CCA1(2)               --------->YAB1       --------->ANAC46  ---------->DOF2                 ------>ZmHOX2a(2)          ------------>CBF          <---------ALFIN1<---------AHL20(2)              <---------ARR14(2)        --------->ANAC46     --------->YAB1    --------->AHL20(1)                   --------->ARR14(2)        --------->ANAC58   --------->AtLEC2    --------->AHL20(2)            <---------ZAT14        <        --------->ANAC58<---------AHL20(2)------------>CBF  --------->ALFIN1 --------->ZAT14      *TSS   ctctaaatacaccccaatagtattatttcattcaaaacacaccccacaatttatttaaaagagtcggggtttttccaagaacactggatcgtcgtctctc  18424600                                                                                              -------                                                                                        --------->ANAC58                                                                      <---------AtLEC2  --------->ANAC46                                                         --------->At4g35610            --------->ANAC58                                         --------->At4g35610  --------->MYB46(3)<------ZmHOX2a(1)           ---------->DOF2     --------->TOE1(3)         <---------At4g35610 <------NtERF2 ---------- <---------MYB52(1)            --------->TOE2(3)         --------->LBD16     --------->At4g35610 ----------DOF2     <----------DOF2---------->DOF2   --------->ARR14(2)      <---------At4g35610  <--   tcctttagttagacaaagcctcctttcccaaaaccctaaaatcagccaaattcaaattccgctaaccaatttccatggcagaggaaattccagcaacagc  18424700                                                                                                    <                                                                                                    -                                                                                                    -                                                                                                    <                                                                                                    -                                                                                                   --                                                                                                  ---                                                          --------->LBD16                        <---                                                         <---------ANAC46                        ----                                                   --------->ARR14(2)                           <----                                                  --------->ATERF1(1)                           -----                                                 ------>NtERF2                                 ------                                                 <---------ATERF1(1)                         --------                                                 <-----------HVH21                           ------->GAMYB                                                --------->DEAR3(1)                          ---------                                                --------->RAP2.3(2)                        <---------ATERF1(1)                                                --------->RAP2.3(3)                       <---------ARR14(2)                                               --------->ATERF1(1)                    ------>ZmHOX2a(1)     --------->ANAC46                          --------->DEAR4(2)               ---------------------     --------->ANAC58                          <------NtERF2                   ======================MYC_MYB     --------->ANAC58                          --------->ORA47(2)              --------->TGA1a------>NtERF2 >GAMYB           --------->AtLEC2             --------->RAP2.3(1)             <---------TGA1a<------ ->RAV1(1) --------->SPL7                     ------>NtERF2           ------>ZmHOX2a(1)--------->ANAC46 -------YAB1   <-------TEIL       --------->At4g35610  ------>ZmHOX2a(1)      ------->TEIL--------->ARR14(2)   atcattcactccatacgtccattcacaaactctaacatctcacaatcgcgccgtctcctccgtgaaattctcctccgatggacgtctcctcgcatccgcc  18424800   --------->ORA47(1)   ----------->RAV1(1)   ------>NtERF2  --------->At1g77200  --------->DEAR4(1)  --------->RAP2.6(2)  ----------->HVH21  --------->RAP2.3(3)  --------->RAP2.3(2)  --------->RRTF1(3)  <---------ETT(1)  --------->RRTF1(2)  --------->DREB2C(2)  --------->DEAR3(1) --------->ORA47(2) --------->ERF1 --------->RAP2.3(1) ---------At4g35610 ----->NtERF2 -------->At4g35610 ---------ATERF1(1) -------->LBD16 ------->DEAR3(1)                         ------->GAMYB ------>ATERF1(1)                       <---------TOE2(3)                                 <---------ARR14(2) ------ATERF1(1)                       --------->MYB52(1)                  --------->ORA47(1) -->NtERF2                   --------->YAB1                                --------->ANAC46 -----ALFIN1                <---------ATHB12         --------->DEAR3(1)   --------->MYB46(3) ---->DEAR3(1)             --------->ANAC58       ------->GAMYB           --------->DEAR3(1) --->ATERF1(1)             --------->ANAC58 <------ZmHOX2a(2)            <---------At4g35610 ->ANAC46   <---------ARR14(2)         <-----------GT1------>NtERF2     <---------At5g28300 >MYB46(3)  --------->ARR14(2)         <---------DOF5.7(2)--------------->AtSPL3    --------->MYB52(1) -->TaNAC69(2)   <---------ALFIN1    --------->DOF5.7(2)------------------>SPL14--------->AtLEC2  <-- ---ATERF1(1)   --------->LBD16 --------->ANAC46 --------->MYB46(3)    <-----------GT1    --------->ARR14(2)   tccgccgacaaaacaatccgcacttacacaatcaacaccattaacgatccaatcgccgagcccgtacaagaattcaccggccatgaaaacggtatctccg  18424900                                           ----------->HVH21                ==================================================bZIP_DOF                <---------TGA1a          <---------At4g35610       <---------ANAC46                --------->TGA1a    --------->ZAT2   --------->TOE1(3)                --------->ANAC46   --------->At4g35610          ----------->HVH21                --------->ANAC58   <---------At4g35610 ---------->DOF2             <---------WOX13(1)                --------->ANAC58   <---------ZAT2   --------->TOE2(3)            --------->ATHB12---- ---------RAV1(1)    ----------->GT1     --------->At4g35610--------->CCA1(2)   <-------TEIL    <----   atgttgcattctcttcagacgcgaggtttatagtctcagcttccgatgacaaaaccttaaagctatgggacgttgaaactggttcattgatcaagacgct  18425000                                                         --------->ARR14(2)                                                         <---------ARR14(2)                                                    >>>>>>>>>ARR1                            --------                                                    >>>>>>>>>ARR2                            <-------                                                   --------->ATHB12                   <------ZmHOX2a(2)                                                  <---------YAB1                     <---------ARR14(2)                                                --------->YAB1                       --------->ARR14(2)                                            --------->AHL20(2)                       <---------AGP1               --------->ANAC58            <---------ATHB12      --------->MYB52(2)  --------->ARR11(3)          <---------ICU4                 --------->WOX13(1)     <-------TEIL        <---------CCA1(2) ----->ATHB12  --------->ANAC58        ------>ZmHOX2a(1) ------->TEIL           --------------------- ------DOF2  <-----------GT1          --------->TOE2(3) <---------CCA1(2)  ------->TEIL------>ZmHOX2a(2)   tattggacacactaattacgccttctgtgtcaatttcaatcctcaatcaaatatgattgtatctggttcgtttgatgaaactgttcggatctgggatgtc  18425100  Previous    Next  AGI:  At3g49660.1    Description:  transducin family protein / WD-40 repeat family protein. similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT4G02730.1); similar to unknown [Picea sitchensis] (GB:ABK22482.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain G-protein, beta subunit (InterPro:IPR001632); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 18424598    to: 18426564    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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