Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                  <-----------GT1            <---------GLK1(1)            --------->GLK1(1)                                                                       <   --------->MYB46(3)                                                                               -   ------>ZmHOX2a(2)      <---------At4g35610                                             --------->MYB46(3)   ==============HOX2a_HOX2a                                                             ------>MYB83  ===============HOX2a_HOX2a      --------->ANAC58                                       ------>MYB46(1)  <------ZmHOX2a(2)       --------->At4g35610               --------->MYB46(3)          --------->ANAC46 <---------ARR14(2)       --------->ZAT2                   >>>>>>>>>>>>>>>>>LFY         --------->ANAC58 --------->ARR14(2)   <-----------HVH21    --------->AHL20(2)                           --------->ANAC58 ------ZmHOX2a(1)-------->P       --------->ANAC46    --------->LBD16               <-----------GT1 < ->GT1    <------ZmHOX2a(1)       --------->ANAC58   --------->LBD16           ----------->GT1      <   aaggatccaccaggaaatcaaccccttcagctctccaagaaacaaaaaaatcatcccgagaaaccaatgtcccaatctcaagtgtaataccagccaactt  18363800         <---------MYB46(3)    <-------TEIL                                                    --------->At4g35610    --------->ZAT14              <---------ARR14(2)                 --------->ZAT2 ---------TOE2(3)                --------->ARR14(2)              --------->RAP2.6(3)                - -------->DAG2 <<<<<<<<<TBF1<---------TOE2(3)                   <-----------GT1            <---------AtLEC2 ---------------AtSPL8     --------->MYB52(1)  <------ZmHOX2a(1)--------->MYB52(1)   <---------TOE2(3) ---------TOE1(3)   <----------DOF2    <---------GLK1(2)    <----------DOF2 --------->AtLEC2       --   ataaggtacagtcgttcttcttctttgattaagggaatatggattcttaggacccaaactgacttttaacggctggccatccaagatgaggttgcattgc  18363900                     <---------ZAT2                     ----------->RAV1(2)                     --------->ZAT2                     <---------At4g35610                                                   <---------CCA1(1)                     --------->At4g35610                                                   <---------RVE1(1)                   <-----------RAV1(2)                                                    <---------ARR11(3)          --------->ANAC46                                                  --------->YAB1--------->ARR14(2)   --------->At4g35610                         ---------->DOF2             <-------TEIL   --------->ARR11(3)   <---------At4g35610                     <----------ID1        <----------DOF2          <---------ARR14(2) -------->ZAT14--------->ANAC58     <---------------------WRI1   <---------DAG2       <---------LBD16 ------->AtLEC2--------->ANAC58   --------->TOE1(2)           <---------ALFIN1 <---------ICU4   cctgcagcatccatggcacgaccagctgattcaaaaactgcgaaatggacaaaggcatgaggctccactttcttatattcatcaatactggggatatttg  18364000                                           --------->ANAC46                                         <XXXXXXXXXXXXXXXXXXXXMIR779.2                              <-----------RAV1(2)                              <---------LBD16                     <------ZmHOX2a(1)  --------->ZAT18        ------->GAMYB                    <---------YAB1      <---------WRKY38(1)   --------->ANAC46                    <--                   <---------TOE2(3)    <---------ZAT18       --------->ANAC58           <---------TOE2(3)             <---------------AGL15  <------ZmHOX2a(1)         --------->ANAC58           <---------TOE1(3)            <-----------------AG <------ZmHOX2a(1)  <---------AHL20(2)      ------>ZmHOX2a(1) -------   aagtgtctgcgatttcaaaattaggataagacccaggaggagtccacgaagtttttaatctgcaacgccaaacaattcctacttcatcttcaaggtaatc  18364100                                                           ------>MYB83                                            <---------ANAC58                                            <---------ANAC58                                            <---------ANAC46                                 ------>ZmHOX2a(1)                                   --------->AtMYB61       ------>MYB46(1)                   --------                             --------->ARR14(2)          --------->DEAR3(1)                 ---------                             <---------ARR14(2)  <-----------HVH21                         ----------                         --------->LBD16<---------ANAC58 --------->DREB2C(2)               <---------LBD16                     <---------GLK1(1)  <---------ANAC58 ------->GAMYB        ----------->HVH21  <-------GAMYB     --------->ARR14(2) <---------ICU4   --------->MYB46(3)    --------->WRKY12 ---------HVH21     <---------ARR14(2)<---------ATHB12  --------->DEAR3(2)  ----------->RAV1(2)  ---- -->GLK1(2)       <---------ZAT18 --------->MYB46(3) --------->MYB46(3)<-----------GT1<---------CCA1(2)   tgtgagttgttttgcagtagtggattccccaaatccaccaatgcttacttgtgtcacaaccgacttcttcatatttccctctgaccccatttctcctgaa  18364200                                                                                            ------>ZmHOX2a(2)                                                                                           --------->CCA1(2)                                                                                           <------ZmHOX2a(2)                                                                                          <---------ARR14(2)                                                                                          --------->AGP1                                   <---------TOE2(3)                                      --------->ARR14(2)                          <---------ALFIN1                                                <---------AGP1                          ----------->RAV1(1)                                             <---------- ->LBD16               ------->GAMYB                         ---------->DOF2              <---------ARR11(3) ------>AGL15          --------->ANAC46            --------->ARR11(3)                     --------->ARR11(3) ->RAV1(2)          <-----------GT1--------->DAG2  <---------AHL20(1)              <---------MYB52(1) ------>DOF2  ----------->GT1 <---------YAB1       --------->AHL20(1)             <-------GAMYB   aaagaaacatactaaacagaaataacccccacatgataaggctgataagagaaaatattgaagaaaagccctaattcgctactccgttggaagatctaag  18364300                                                                            <---------YAB1                                                                       <------------CBF                                                                  ------>MYB46(1)                               xxxxxxxxxxxxxxxx>smallRNA(i)     <---------MYB59<---------WOX13(1)                              --------->HSFC1(2)               <---------ANAC55(2)                              --------->HSFB2a(1)<------------CBF ------>MYB83<------------CBF ----------->TBP             <---------YAB1    <---------YAB1  --------->ANAC55(2) -ARR10            ------------>CBF      ----------->TBP    <------ZmHOX2a(2)--------->ATHB12   accataaatatcaaattaagagacaatatcgatgattccaactacaaatactattgaaatcgatcacctaatacattgttgattgaataattttggaatc  18364400                                                                    <-----------------AGL3                                                                 --------->WOX13(1)                                                               ------------>CBF                                                           <----------DOF2                                                          ------>ZmHOX2a(2)                                                         <---------RVE1(1)                                          <-----------------------TaNAC69(2)                --------->ANAC58     --------->HSFB2a(2) <------ZmHOX2a(2)       <---------TOE1(1)              ---------->DOF2        <---------HSFB2a(2)--------->AGP1           <---------TOE2(1)       <---------ICU4             <---------ARR14(2)    <---------ARR11(3)     --------->CCA1(2)-----      --------->AHL20(2)          --------->ARR14(2)    --------->ARR11(3)    <---------ARR14(2)----- --------->LBD16--------->ANAC58  --------->GLK1(2)   ----------->ARR10       --------->ARR14(2)-----   aagcgggaataaatacaaaagcacttacacagtgaggttctggagacttacacagtgagatctttttcaatctaatactggatacgaggtagaaatagaa  18364500                                                  --------->LBD16                                                  ------>NtERF2           <---------ZAT14                       --------->ANAC58                                   -      <---------ARR14(2)                         --------->ANAC46                                 ---    --------->LBD16                              --------->ANAC58                                 ---   <---------ANAC46                           <---------ARR14(2)                                  ---  <---------LBD16                             --------->ARR14(2)                          <---------ANAC46 ---->ANAC46                          --------->DAG2    --------->At4g35610              <----------- ---->ANAC58                     <----------ID1 --------->MYB46(3)                     <---------DEAR3(1) ---->ANAC58       <------ZmHOX2a(1) ---------->DOF2    <---------At4g35610  <---------AHL20(2) <----   gcaatgcggagactggagagaggattagtgagtatgcgaaaaagggagaacccgccatagctgaaaccatctctcgtttttatttgacttcggcgagtaa  18364600                                                               <-------PIF5                                                               <-------MYC4                                                               ------->PIF5                                                               ------->MYC4                                                               <-------MYC2                                                               ------->MYC2                                                               <-------PIF4                                                               ------->PIF4                                                               <-------MYC3                                                               ------->MYC3                                                              --------->ANAC55(2)                                                              <---------ANAC55(2)                                                              <---------ANAC58                                                              <---------O2                                                              <---------TGA1a                                                              ================bZIP_DOF                                                              ================bZIP_DOF                                                              --------->TGA1a                   <----                                                              --------->O2                      -----                                                              <---------ANAC58                  -----       --------->GLK1(2)                                     ------------>OsbHLH66              <---- --------->DOF2                                          --------->At4g35610                    <---- ------>ANAC46                                           <---------At4g35610                    ----- ------>ANAC58           ----------->GT1              <---------At4g35610                      ------ ------>ANAC58          ----------->GT1              <-----------RAV1(1)                   --------->AHL20(2) ----------WRI1       <---------ANAC46           <---------ANAC58              <---------AHL20(2) -----DOF5.7(2)      --------->ALFIN1            <---------ANAC58  <----------DOF2     <----------DOF2   acgaaagagagtctgagactgatgagggggaaaatagactggagaagaagtgcttgtgctgctcacgtgctatttgtctaattaatgggcttttaaaata  18364700  Previous    Next  AGI:  At3g49500.1    Description:  RDR6 (RNA-DEPENDENT RNA POLYMERASE 6); nucleic acid binding. similar to RDR1 (RNA-DEPENDENT RNA POLYMERASE 1), RNA-directed RNA polymerase/ nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G14790.1); similar to putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana] (GB:AAU21242.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44232.1); similar to RNA-dependent RNA polymerase 6 [Nicotiana tabacum] (GB:BAF96019.1); contains InterPro domain RNA-dependent RNA polymerase, eukaryotic-type (InterPro:IPR007855) Range:  from: 18360178    to: 18364190    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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