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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
LBD16
<---------
LBD16
----------->
HVH21
------
<----------
DOF2
--------->
ANAC58
------
<---------
ARR11(3)
--------->
ANAC58
--------->
ARR14(2)
<-----
--------->
ALFIN1
<---------
LBD16
<---------
ARR14(2)
<-----
<---------
ANAC46
--------->
ANAC58
<---------
ZAT2
-------
--------->
ANAC55(2)
--------->
ANAC58
--------->
ALFIN1
--------->
ZAT2
<-------
-
DOF2
<---------
bZIP60(2)
--------->
MYB52(1)
--------->
LBD16
<-------
TEIL
tttatgtgatgtgtag
ttctttgacaagtaccggggcaagcgagtgccggtctag
tcttccatcccgagcagagagacgattcactgagctagatgcagc
18342100
------>
ZmHOX2a(1)
------>
ZmHOX2a(2)
<---------
ANAC58
--------->
ANAC55(2)
<---------
ANAC46
<---------
ANAC58
<---------
ANAC55(2)
<-----------------------
TaNAC69(2)
<-----------
RAV1(2)
<---------
HSFC1(2)
--->
At4g35610
<---------
HSFB2a(1)
<------
ZmHOX2a(1)
--->
ZAT2
>>>>>>>>>
TBF1
==============================
HOX2a_HOX2a
<-------
TEIL
----
At4g35610
--------->
HSFB2a(2)
<---------
ARR11(3)
--------->
AHL20(2)
--------->
TOE1(2)
----
ZAT2
<---------
TOE2(3)
--------->
HSFB2a(1)
----------->
GT1
<-------------
>
TEIL
---------->
DOF2
--------->
HSFC1(2)
---------->
DOF2
--------------
----
RAV1(2)
<---------
HSFB2a(2)
--------->
ARR11(3)
<------
ZmHOX2a(1)
---------->
DOF2
tgaacaggcgattaaagtttttggaagaagaagtttcgtgatcctgtagaaaactaaaaccataggagaaagaaaataggaaggaaaagaacgtacaatt
18342200
<---------
ANAC46
--------->
ALFIN1
--------->
At4g35610
----------->
GT1
<---------
ZAT2
<---------
ANAC46
----------->
GT1
-----
--------->
At4g35610
<---------
At4g35610
------->
GAMYB
<------
<---------
At4g35610
--------->
At4g35610
<-----------
RAV1(2)
<---------
GLK1(2)
<---------
YAB1
--
AtSPL8
<-----------
RAV1(2)
===========================
RAV
<---------
AHL20(2)
->
AtSPL3
<-----------
HVH21
------->
TEIL
<--------
P
----------->
RAV1(1)
--------->
ICU4
<------
tgaagctgtgtgtctatgtttcaggtgaagtagatgaatcttcgtccaggttgcaaattgcaacagaatgttaaaaatgtaatgttttatttttgggtta
18342300
<---------
ANAC55(2)
--------->
ANAC55(2)
--------->
ANAC58
--------->
TOE2(3)
<---------
ICU4
---------
--------->
ANAC46
--------->
ICU4
<--------
--------->
REM1(1)
---------->
DOF2
--------->
MYB46(3)
--------->
YAB1
---->
MYB52(2)
<---------
AHL20(2)
<-----------
GT1
--------->
ANAC55(2)
--
P
<---------
ALFIN1
--------->
AHL20(2)
<---------
DAG2
<---------
ANAC55(2)
----
---
MYB52(1)
<---------------
AGL15
<-----------
GT1
<----------
DOF2
--------->
ANAC58
<------
gttataggttacacctcaattttggaaactaattaaagagaaacaattgtttctattcacaaaaactttttgtaaccattacgcattacataattttaat
18342400
----------->
GT1
<---------
AHL20(2)
----------------------
<---------
YAB1
---------->
DOF2
----------->
GT1
--------------->
AGL15
>
AHL20(2)
>>>>>>>>>>
WRKY38
<---------------
AGL15
-
AHL20(2)
>>>>>>>>>>
WRKY26
--------->
MYB52(1)
<---------
PCF2
----->
YAB1
--------->
TOE2(3)
----------->
GT1
<---------
ANAC55(2)
--------->
AHL20(2)
-----
GT1
<-----------
GT1
>>>>>>>>>>
WRKY43
<---------
TOE2(3)
<-----------------
AGL3
--
catattgttattaact
taatggttctatttgaccaaaaacaaaaacttagaggttatttgacaaacagattacttaaagagggaccgaaaaataaaaaca
18342500
<---------
MYB52(1)
--------->
LBD16
<---------
LBD16
*
TSS
<---------
ATERF1(1)
----------->
GT1
<---------
TOE2(3)
----------->
GT1
---------->
DOF2
---------->
DOF2
--------->
DAG2
-->
ANAC81
--------->
MYB52(1)
<------
ZmHOX2a(1)
--------->
MYB52(1)
--------->
TOE2(3)
-------->
DOF2
<---------
MYB52(2)
<---------
LBD16
<------
ZmHOX2a(1)
---------->
DOF2
caaaagaactgagtgaatcaactaaagggt
aattccggtatttcaggaaagttttaaggacgacccctactaatggataaagtagaaaccctagtttgaa
18342600
<---------
ZAT14
--------->
ZAT14
<------
NtERF2
----
------>
NtERF2
----
<---------
ATERF1(1)
<---
--------->
LBD16
----
------>
NtERF2
-----
<-----------
ARR10
<------
<---------
ATERF1(1)
<---------
ARR11(1)
---------
<---------
ALFIN1
<---------
ARR11(3)
---------
------>
NtERF2
--------->
ARR14(2)
--------->
LBD16
<---------
RAP2.6(3)
--------->
ARR11(3)
--------->
ARR14(2)
--------->
DREB2C(2)
<---------
ARR14(2)
<---------
ANAC46
<---------
ETT(2)
<---------
ARR14(1)
<---------
ANAC58
-
----------->
HVH21
------>
MYB46(1)
<----------
DOF2
<------
--------->
RAP2.6(2)
<-----------
RAV1(1)
--------->
ANAC46
<---------
LBD16
--------->
DEAR3(1)
<---------
YAB1
------>
MYB83
<---------
DEAR3(1)
--------
--------->
DEAR3(1)
--------->
LBD16
<---------
CCA1(2)
<---------
ANAC58
<
--------->
ANAC46
------>
ZmHOX2a(1)
<---------
MYB59
--------->
At4g35610
-----
<---------
At5g28300
<---------
At4g35610
<---------
ANAC58
<---------
DEAR3(1)
<---------
LBD16
<-----------
GT1
--------->
At4g35610
<---------
ANAC58
<---------
LBD16
<---------
ARR14(2)
ttttcacggccgacctctctctctcatctactaagctctcctccgagtattgttggcttcagaccaaatcttctccggcgctgtagcgtttcccccg
gta
18342700
<-------
TEIL
----->
ANAC58
----->
ANAC58
------
ANAC55(2)
----->
ANAC55(2)
---->
SPL7
---
MYB52(1)
--------->
LBD16
>
ANAC46
<---------
ANAC46
>
LBD16
<-----------
GT1
<---------
ANAC55(1)
-------->
ARR14(2)
<---------
ANAC58
---
SPL7
<---------
ANAC58
->
LBD16
<---------
MYB52(1)
--------->
ANAC55(2)
---------
ARR14(2)
<-----------
RAV1(1)
<------
MYB83
<--
---->
SPL1(2)
--------->
ZAT6
<------
MYB46(1)
<---------
YAB1
cggattcattcacctctctctctctatcgctctccctctctctatctctatctatctgttgttttctctgaatttggtttccgtgttcttatgaattcga
18342800
<-----
<---------
ANAC58
--------->
HSFC1(2)
<------
MYB83
--------->
TOE2(3)
<---------
HSFC1(2)
<---------
ANAC58
<------
MYB83
--------->
MYB111(1)
<------
MYB46(1)
<---------
MYB52(1)
<------
MYB46(1)
--------->
MYB52(2)
<---------
ANAC46
<---------
AtMYB61
<--------
P
<---------
MYB46(3)
<-----------
RAV1(1)
--------->
ALFIN1
--------->
MYB46(2)
<---------
ICU4
<---------
ANAC58
<---------
AtMYB61
--------->
ICU4
<---------
MYB46(3)
>>>
--------->
MYB111(1)
--------->
YAB1
<----------
DOF2
----------->
GT1
<---------
ANAC58
<--
-------
MYB46(3)
----------->
GT1
<---------
YAB1
---------->
ID1
<---------
AtMYB61
<-----
tggtttggtgtttcaatttcgttaatttcactgataattgttggtcttttggctctcttgaggtgaatatacttcgctatggtcgtgggggtagtttcct
18342900
--------->
ARR14(2)
--------->
HSFC1(2)
--------->
GLK1(2)
<---------
HSFC1(2)
--------->
AHL20(2)
<---------
ARR14(2)
--------->
HSFB2a(1)
<---------
AHL20(2)
<---------
GLK1(2)
<---------
HSFB2a(1)
<---------
AHL20(2)
<---------
MYB46(3)
<---------
KAN4(1)
--------->
AHL20(2)
<---------
YAB1
----
ANAC58
<----------
DOF2
--------->
KAN4(2)
<---------
YAB1
<---------
TOE2(2)
>>>>>>
WRKY18
<---------
TOE1(2)
<---------
YAB1
<---------
TOE1(2)
-------
WRKY18(1)
<---------
KAN4(2)
<---------
TOE2(3)
--------->
ARR11(3)
--
----
ANAC58
<---------
DAG2
--------->
KAN4(1)
<---------
TOE1(3)
<---------
ARR11(3)
<--------
tgacttcaattagcttttttatgtcgaatgttcttgagttgtttaaggtgatttttgattaaattcagaaggtcttatgtttgttagaatctgtctttta
18343000
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AGI:
At3g49420.1
Description:
Got1-like family protein. similar to Got1-like family protein [Arabidopsis thaliana] (TAIR:AT5G01430.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63466.1); contains InterPro domain Got1-like protein; (InterPro:IPR007305)
Range:
from: 18340372
to: 18342416
Orientation: Forward
Links:
TAIR
MIPS
AGI:
At3g49430.1
Description:
SRP34A (SER/ARG-RICH PROTEIN 34A); RNA binding. similar to ATSRP30.1 (ARABIDOPSIS THALIANA SERINE/ARGININE PROTEIN 30.1), RNA binding [Arabidopsis thaliana] (TAIR:AT1G09140.1); similar to ATSRP30.1 (ARABIDOPSIS THALIANA SERINE/ARGININE PROTEIN 30.1), RNA binding [Arabidopsis thaliana] (TAIR:AT1G09140.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO48579.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677)
Range:
from: 18342531
to: 18346026
Orientation: Forward
Links:
TAIR
MIPS
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