Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                             <----------DOF2                                                                           <---------DAG2                                                                       <---------ALFIN1                                                              --------->MYB52(1)                                                             <---------ARR14(2)                                                             --------->ARR14(2)                                                           --------->LBD16<---------DAG2           --                                                          <---------HSFC1(1)                      <--                    <---------ANAC58                      <---------HSFB2a(2)                 <------ -------->TOE1(3)   <---------ANAC58---------->DOF2       --------->HSFB2a(2)           <----------DOF2 ----->DOF2   <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   --------->HSFC1(1)     --------->LBD16  --- ->GT1       <---------YAB1  <------ZmHOX2a(1)--------->MYB46(3)     ----------------------->TaNAC69(2)   aagcttaaacataccatcaatggcttcacgaggagtcttgaagcccaaaccaatgttcttccagaaacggtttccaccttttccaggtctctttcccttt  18152900  <---------GLK1(1)  --------->GLK1(1) <---------GLK1(2) ------->LBD16 -------HSFB2a(2)                                       --------->AHL20(2) ----DOF2                                 <-----------GT1                               --------->GLK1(1) ------>HSFB2a(2)     --------->YAB1      --------->ANAC46                     <---------ZAT14  -----   ccagatttcttcgagcttgataaatcagaaacaatgaacaatataaacaacttggaacttaaatacaatgaaacaatagagaacagagagaaatcgaatc  18153000                <---------ARR11(3)                --------->ARR11(3)          <---------TOE2(3)         --------->MYB52(1)      --------->ANAC55(2)              <----------DOF2                                        <------      <---------ANAC55(2) <---------At4g35610                       ---------->DOF2     <--------HAHB4    <-----------GT1       --------->At4g35610              <---------ZAT6               --------->ATHB12 ------>GT1 <------ZmHOX2a(1)     ---------->DOF2          ----------->HVH21      --------->YAB1   gcaaaattacctaaggaagaccttaggctgcttaagaaaagctttctcagtctgaaaattagtgacagagaaaagagaagagtattagaatcatttgagt  18153100                                                                  --------->LBD16                                                                  ------>NtERF2                                                                 --------->ANAC58                           <---------ARR14(2)                    --------->ANAC58              <------ZmHOX2a(2)                                  --------->ANAC46                 <--              ================================HOX2a_HOX2a     --------->ARR14(2)              -------              ===================HOX2a_HOX2a              ----------->RAV1(2)               ---------             <---------ARR11(3)                         <---------ARR14(2)                 --------->LBD16      <------ZmHOX2a(2)    --------->ARR14(2)     <------ZmHOX2a(2)                       --------->O2      ===========================HOX2a_HOX2a     --------->AGP1 <---------LBD16           <---------ANAC46    =================HOX2a_HOX2a       ==================HOX2a_HOX2a                   <---------LBD16    <------ZmHOX2a(1)     ===============================HOX2a_HOX2a               --------->At4g35610  <---------TOE2(3)       <------ZmHOX2a(1)      --------->ARR14(2)                --------->ZAT2 <-- --------->YAB1--------->YAB1          <------ZmHOX2a(1)<-----------GT1            <---------At4g35610 ---ANAC46   --------->ARR11(3) --------->TOE1(3)<---------ARR14(2)      <---------ANAC46--------->LBD16   gaataaggatcaatagatcataaaacgaggataagcttagaggagagaacagatcgagtaacctgttccgccatggctgatgttgagctcccgcgtgaaa  18153200                                   <---------At4g35610                                 <---------DEAR3(1)                                <------NtERF2       ---------->DOF2          <---------At4g35610    --------->ANAC58           <---------ATERF1(1)    --------->ANAC58          <---------RAP2.6(2)                   <---------ARR11(3) --------->REM1(2)           --------->ZAT18                        --------->ARR11(3) -------ANAC58    <------ZmHOX2a(1)<------NtERF2                  *TSS     --------->AHL20(2) --->DOF2        <------MYB46(1)--------->ATERF1(1)             <---------AtLEC2 --------->ANAC46 -->HVH21        <------MYB83<---------LBD16           --------->TOE2(3)   <-----------TBP -------ANAC58 <--------P    <---------ZAT18           --------->TOE1(3) <----------DOF2            <   gcttgtaggcaaaggaggtaggagacgatagtgcggcagcgattactgaaatgaaaaccctaatttgcaagacctctttatataagacattttctacatg  18153300                                      <---------ANAC58              <---------MYB52(2)      <---------ANAC55(2)           <----------ID1             --------->ANAC55(2)     ------------>CBF           --------->AHL20(2)                                              -----    <-----------GT1   <------------CBF<---------ANAC58                                        <------  ----------->GT1    --------->ATHB12<---------LBD16                                          <------ <---------------AtSPL8         <---------AHL20(2)                          ---------->DOF2   >>>>>>> --------------->AtSPL8       <----------DOF2                    ----------->GT1    <------ZmHOX2a(1) ------------CBF   --------->TOE2(3)<-----------GT1  --------->MYB59  <---------ARR14(2) <----------DOF2   aaaattgtacaataccacaaacgttattgggcctttaattacgggccttagtatttaggcccaagtatagaaaatccctaaaacgaggatgctttgactt  18153400                                                                  <---------AHL20(1)                                                           <---------AHL20(2)                                                           --------->AHL20(2)                                                       --------->AHL20(2)  --------->GLK1(2)                                                      <---------AHL20(2)   <-----------ARR10                                                      <---------YAB1       <---------ARR11(3)                                                     <---------AHL20(1)    --------->ARR11(3)       --------->MYB59                             --------->AHL20(1)  <---------AHL20(2)   <-------- --------->ICU4                          --------->HSFB2a(2)      --------->AHL20(1)        --------- ------>HVH21                  <---------DAG2     --------->YAB1--------->AHL20(1)--------->TOE1(3) ---ANAC58                     <----------DOF2    --------->AHL20(2)  XXXXXXXXXXXXXXXXXXXX>MIR1886.3 ---ANAC58                  <-----------GT1    --------->YAB1   <---------AHL20(1)--------->TOE2(3) >>>WRKY18      --------->ALFIN1         <---------HSFB2a(2)   --------->AHL20(2) --------->YAB1   gacataattttggtaagggtgtgttttgttttactttttgtttttggaacaataatattatttaaatatatattaaaaatctaatcttaaatagtgcaaa  18153500                                              --------->AHL20(1)                                              <---------ARR11(3)     <---------ANAC58                                              --------->ARR11(3)     <---------ANAC46            --------->TOE2(3)                 <---------AHL20(1)     <---------ANAC58 <---------TOE2(3)                   ----------->GT1               <-----------GT1 -ZAT18  <<<<<<<<<<GT-3b       --------->TOE2(3)           <---------ANAC46 >ZAT18<---------YAB1   <-----------GT1 <-----------GT1 <---------AtMYB61                >>>>>>>>>TBF1   attttggttatttttcttaattgtttttactaaacttaaatgtaacaatattttggtattggtgtatttttacttggaccatgagattgaagaagaaaac  18153600         <--------ATHB1         <---------ICU4         -------->HAHB4         --------->ATHB51         --------->ATHB12        <---------AHL20(2)        --------->AHL20(2)        <---------ATHB51                                   --------------->AtSPL8        --------->ICU4                                    --------->At4g35610   --------->ANAC58                  ---------->DOF2      <---------At4g35610   ----------->GT1           ---------->DOF2       <---------TOE2(3)   --------->ANAC58   <---------TOE2(3)            <---------TOE1(3)         ----------->GT1      ---   ttgaaacgaaataattgggagtttaagtttagaaagttcaaaagaagtctctcaaggttaagctgtacaaattacacatgagtaaaacacattactccaa  18153700                                                                      <---------MYB52(2)                                                                      --------->MYB46(3)                                                                      <---------MYB111(1)                                                              <---------ALFIN1                                                             <---------MYB55(2)                                                             --------->MYB46(3)                                                            -------->P<---------MYB111(2)                                                            ------>MYB83                                                            ------>MYB46(1)                                                           --------->MYB55(1)                                                          <---------MYB111(2)                                                          --------->DEAR3(1)                                                          <---------MYB111(1)                                                          --------->AtMYB61                                                          --------->MYB46(3)                                                          <---------MYB46(2)                                    <-----------RAV1(1)   <---------MYB55(2)                                   <---------TOE2(3)   --------->ANAC46       --------->YAB1                              <----------DOF2          --------->ANAC58       <---------ICU4                           <-----------GT1             <---------ALFIN1      <---------ATHB12                           ------->TEIL                --------->ANAC58 -------->P              -----        ----------->GT1 --------->AtLEC2   XXXXXXXXXXXXXXXXXXXX>MIR399D------->GAMYB   <----------DOF2 ------>YAB1    <---------ICU4<---------DAG2         <---------ALFIN1 <---------MYB55(2)      -------   acataataagacgttacattatggccatgtaactttttatgttgccaaatgaaacccacaccaaccacttcaactaccaataatctcttctttctcaagt  18153800  Previous    Next  AGI:  At3g48930.1    Description:  EMB1080 (EMBRYO DEFECTIVE 1080); structural constituent of ribosome. Identical to 40S ribosomal protein S11-1 (RPS11A) [Arabidopsis Thaliana] (GB:P16181); similar to RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT5G23740.1); similar to Os04g0502300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053235.1); similar to 40S ribosomal protein S11 [Chenopodium rubrum] (GB:CAK22271.1); contains InterPro domain Nucleic acid-binding, OB-fold (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold-like (InterPro:IPR016027); contains InterPro domain Ribosomal protein S1 Range:  from: 18151756    to: 18153266    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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