Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         <------ZmHOX2a(1)   <------ZmHOX2a(1)                           --------->ARR14(2) --------O2                                    ------->TEIL --------bZIP60(2)       ---------->DOF2  <------MYB46(1) --------ANAC46        <------ZmHOX2a(1)  <------MYB83                                         ------ ------>HVH21        <---------TOE2(3)    ----------->GT1                                  ------>NtERF2 ------>TGA1  <---------ANAC46         <---------ANAC58                <--------P         --------->ANAC46 ---ANAC58    --------->ANAC55(2)      <---------ANAC58            --------->LBD16        --------->ANAC58 -->MYB52(2) <---------LBD16        <---------TOE2(3)        ------->TEIL     --------->ARR14(2)  <-- ---ANAC58  --------->MYB52(1)  <-------GAMYB  <---------ARR14(2) <-----------RAV1(2)     --------->ANAC58 -------->WRI1<---------ANAC55(2)   <---------TOE1(3)       <---------ALFIN1  <---------ARR14(2)  <--   gacgaggaaggacgttacggattgaggaagagcgggttaaggcttggtgaatctccattgatgcacctccagggtaagcgaatacggtttctacgccttg  18014200                                                                                         <--------P                                                                                        <-------GAMYB                                  <---------LBD16                                     <---------AtMYB61                                  <---------ANAC58                                <------MYB83                                  <---------ANAC58                                <------MYB46(1)                                  <---------ANAC46                               --------->MYB111(1)                                 <---------LBD16                                 <---------TOE2(2)                              <----------DOF2                                    --------->MYB59                             <----------DOF2                                     <---------TOE1(2)                           ------>NtERF2                                      <------MYB83 <------MYB83                          --------->DEAR3(1)                                  <------MYB46(1)                         --------->At4g35610                                 --------->MYB111(1)                         <---------At4g35610                                 <---------MYB46(3)                    --------->GLK1(1)                                        --------->MYB59                    <---------GLK1(1)                  <---------LBD16       --------->MYB111(2)                   <-----------ARR10      --------->ARR11(3)<---------At4g35610 <---------MYB55(1)                   --------->ARR14(2)     <---------AGP1    --------->At4g35610 <--------P <------MYB46(1)                   <---------ARR14(2)   ----------->ARR10--------->LBD16     <---------AtMYB61           ----------->HVH21 <---------DAG2 ------>ZmHOX2a(2)          <---------ANAC58<------MYB83    ---------->DOF2<---------ARR11(3)  <--------P    <---------ARR14(2)<---------ANAC58<---------MYB46(3) ----->HVH21       --------->ARR11(3) <-------GAMYB  --------->GLK1(2)<---------LBD16 --------->MYB59 -------ANAC58    <------ZmHOX2a(1)--------->LBD16   --------->ARR14(2)<---------ANAC46<------MYB46(1) -------ANAC58    =================================HOX2a_HOX2a   ------->TEIL--------->MYB46(2)   acgttctaaagcttcgacgaggatatcagcgcctttgcggggttgatctggagcgaatcgggagatgaatgtttcgggtttggtaggtttggttggagag  18014300                                                                                  --------->ALFIN1                                                                                 <------ZmHOX2a(1)                                                                               --------->ALFIN1                                                                             <------NtERF2                                                                            ------>NtERF2                                                                           <---------ANAC46                                                                          <---------LBD16                                                                          <------NtERF2                                                                          --------->ATERF1(1)                                                                         <---------RRTF1(1)                                                                         <---------ATERF1(1)                                                                         <---------RAP2.6(1)                                                                         <---------DEAR4(2)                                                                         <---------RAP2.3(1)                                                                         <---------ERF1                                                                         ------>NtERF2                                                                         <---------ORA47(2)                                                                        --------->DEAR3(1)                                                                        --------->ALFIN1                                                                        <---------ATERF1(2)                                                                        --------->ATERF1(2)                                                                        <---------RRTF1(2)                                                                        <---------ANAC46                                                                        <---------RAP2.3(3)                                                                        <---------RRTF1(3)                                                                        <---------DEAR3(1)                                                                       <------NtERF2                                                                       <---------ABI4(1)                                              --------->ALFIN1         ------>NtERF2                                             <------ZmHOX2a(1)         --------->ATERF1(1)                                     <---------ARR14(2)                --------->RAP2.3(1)                                  <---------DEAR3(1)                  ------>NtERF2                  <-------GAMYB   <---------ANAC46                    <---------ATERF1(1)                 <---------MYB46(3) <------NtERF2                     <---------RAP2.3(1)                <---------AtMYB61<---------LBD16                     <---------DEAR3(1)   --------->ATHB12             <---------AtMYB61 --------->ANAC58                  <---------At5g28300     <---------YAB1        <<<<<<<<<<<<<<<<<LFY   --------->ANAC58           <---------ARR14(2)--------->MYB55(2)       ----------->HVH21       <---------DEAR3(1)    <---------At4g35610<---------RAP2.6(2)     <---------MYB46(3)        --------->ANAC46      --------->ZAT2 --------->LBD16    <------ZmHOX2a(1)  <---------MYB46(3)  <---------ANAC46  --------->ALFIN1  --------->ARR14(2)<---------MYB46(3)<------ <---------AtMYB61----------------------->TaNAC69(2) --------->At4g35610<---------RAP2.3(2)   <------ --------->ALFIN1--------->MYB55(2)--------->LBD16   <---------ZAT2 <---------LBD16 <------ZmHOX2a(1)   ggagtggttgtgacattggtggttgtgttgagcacggcggagatggaggagggagagctggatttgataccgcggcggcgggaggaggaggatgatttgt  18014400                                                                      <------MYB83  <------ZmHOX2a(2)                                                                      <------MYB46(1)                                                                     --------->MYB111(2)                                                                     --------->MYB55(2)                                                                     <---------MYB46(3)                                         ----------->GT1             <---------AtMYB61                                   <------MYB46(1)                   --------->MYB111(1)                                 <---------WOX13(1)                  --------->MYB46(2)      <-------                        --------->ARR14(2)                  ===============================HOX2a_HOX2a                        --------->GLK1(2)--------->YAB1     <------ZmHOX2a(1)     --------->GLK1(1)  <----------DOF2       <---------ARR14(2)              <------ZmHOX2a(1)       <------ZmHOX2a(1) ---MYB46(3)           <---------GLK1(2)--------->ICU4  ===================================HOX2a_HOX2a -----RAV1(1)      ----------->GT1 <------MYB83      <------ZmHOX2a(1)<---------ANAC46       --------   tggggtttagggagaatgggagggagaatctggagattggtaatggtgatttggaggaggaaggagatggtttggtggagaaggagatcgaagaagatgt  18014500                    <------NtERF2                   ------>NtERF2                   <---------RAP2.6(3)                  --------->RRTF1(2)                  --------->RRTF1(3)                  --------->RAP2.3(3)                  --------->DREB2C(2)                  --------->RAP2.3(2)                  --------->RAP2.6(2)                  --------->DEAR3(1)                  --------->ATERF1(2)                  <---------ATERF1(2)                  --------->ANAC46                 --------->ATERF1(1)                 --------->RAP2.6(1)                 --------->DEAR4(2)                 <------NtERF2                 --------->RRTF1(1)                 --------->RAP2.3(1)                 --------->ORA47(2)                 --------->ERF1                ------>NtERF2                --------->At4g35610                --------->ABI4(1)                <---------RAP2.3(1)                <---------At4g35610                --------->DREB2C(1)                <---------ATERF1(1)                <---------DREB2C(1)               --------->ATERF1(2)               --------->DEAR3(1)               --------->ANAC46               <---------ATERF1(2)              --------->ATERF1(1)         <---------REM1(1)     <------ZmHOX2a(1)         <-----------RAV1(1)  --------->LBD16         <---------MYB46(3) <-----------RAV1(2)         ===============================RAV --ARR11(3)   --------->RAP2.3(1)                                 >>>>>>>>>TBF1       --------->ATHB12 ->ARR11(3)   <---------RAP2.6(2) ---------->DOF2                 *TSS               <---------YAB1   tgttgttgttgttgttgccgccgccatggttcaggagaaagatgagcaagagatagagaaacagagaagaagaagagacttgtgaacatgatttgtttaa  18014600                                                                                          -----------                                                                                          -----------                                                                                         ------->MYC3                                                                                         <-------MYC3                                                                                        --------->ANAC58                                                                                        --------->ANAC55(2)                                                                                        <---------ANAC55(2)                                                                                        <---------TGA1a                                                                                        --------->TGA1a                                                                                        --------->O2                                                                                        <---------O2                                                                                        --------->ANAC46                                                   --------->ARR14(2)         >>>>>>>>>GATA-1                         <-----------RAV1(1)   <---------LBD16      <---------MYB52(1)  --------->bZIP60(1)                        <---------TOE2(3)     <---------LBD16      ===============================bZIP_DOF                     <----------DOF2   ---------->DOF2             <----------DOF2      --------->ANAC58                <---------TOE2(3)  <---------YAB1  <---------ARR14(2)    <---------AHL20(2)        <-                <---------TOE1(3)  <---------ANAC55(2)             ------>ZmHOX2a(1)  <-------------DYT1   aaatgagacttgaagtttaagggttttatgttggattacgaaaatgccctcgggatttgatttttggtcctttatttatagataaaactcacgtgacgct  18014700                                                                                             <-------                                                                               <---------AHL20(2)                                                   --------->TOE1(3)           --------->AHL20(2)<--- >TGA1                      <---------WOX13(1)     <---------MYB59 <---------RAP2.6(2)      ------>ZmHOX2a(2) >HVH21                   --------->ATHB12         --------->TOE2(3)  <---------ANAC46    <---------ARR11(3) --------GLK1(2)         <---------YAB1    ----------->GT1       <-----------RAV1(1)      --------->ARR11(3)   ggaatctctagtctatctattgtatttgtgattgagccttcgatatgctaaaacctaaatgtagaatttgtggctgagaaatttatcaaattgatctttc  18014800                                                --------->ANAC58                                                --------->ANAC58                                         <------MYB46(1)                                         <------MYB83                                             <--                                         <---------DEAR3(2)                                       <--       --------->ATHB12                  <---------MYB46(3)                                    <-----      <---------YAB1           --------->At4g35610                                            -------      <---------AHL20(2)       --------->ZAT2   --------->ANAC46                         --------->ARR11(3) <----------DOF2          --------->CCA1(2)    --------->LBD16                         <---------TOE2(3) ---DOF2   <---------MYB46(3) --------->ANAC46<-----------------AGL1             <---------TOE2(3)--- -------DOF2           ----------->GT1 <--------P     <----------ID1   ------>ZmHOX2a(1) <---------ARR11(3)   tttctttttttattggttaagagaatggatacaagctgcaagttggttccacgaattggacaaaaacatagtcctggtgatttgagatttagattttaaa  18014900                 --------->AHL20(2)                               --------->CCA1(2) -------GLK1(2)  <---------YAB1                           <------ZmHOX2a(1)                    <----- -------ARR11(3) <---------AHL20(2)                     <---------TOE2(3)                      ------ ----TOE2(3)    --------->AHL20(2)               --------->ARR11(3)                            ------ --->DOF2       <---------AHL20(1)               <---------ARR11(3)   ----------->GT1     ----------- ------>ARR11(3)--------->AHL20(1) --------->AHL20(2)   --------->ANAC46            --------->YAB1   gatacttcttgatgacaatataatttgtatacatgaataaaaaacttataaggtctataaggaacaagagataagtgaaaatggaataagaatggagaat  18015000                                                           <-------TEIL                                                        <------MYB83                       <---------ANAC46                                                        <---------MYB46(3)       --------->TOE1(1)                                   ---------->DOF2      <------MYB46(1)         --------->HSFB2a(2)                                 ------>ZmHOX2a(1)   <---------MYB52(1)         ------>ZmHOX2a(1) ----ARR14(2)              --------->At4g35610     <---------ANAC58             <---------HSFB2a(2)<- --->GLK1(2)              --------->ARR11(3)       <---------ANAC58       ------>ZmHOX2a(1)<---------ANAC58 --->ARR14(2)             <---------ARR11(3)  <---------ICU4--------->MYB52(2)  <---------LBD16   <-- >GT1         --------->YAB1    --------->TOE2(3)  <---------ANAC46    ------>ZmHOX2a(1)   <---------ANAC58   ttggctacaaaaacaataacaaaactaagagcttcctcaaagggctgataatgtcgtttggttcgttcttctcctcctactcctcggagcattgcctgta  18015100  Previous    Next  AGI:  At3g48560.1    Description:  CSR1 (CHLORSULFURON/IMIDAZOLINONE RESISTANT 1). Identical to Acetolactate synthase, chloroplast precursor (CSR 1.2) [Arabidopsis Thaliana] (GB:P17597;GB:Q5FV34); similar to pyruvate decarboxylase family protein [Arabidopsis thaliana] (TAIR:AT5G17380.1); similar to acetolactate synthase 2 [Camelina microcarpa] (GB:AAR06607.1); similar to acetolactate synthase 1 [Camelina microcarpa] (GB:AAR07633.1); similar to acetolactate synthase 1 [Camelina microcarpa] (GB:AAR07632.1); contains InterPro domain Thiamine pyrophosphate enzyme, N-terminal TPP binding region; (InterPro:IPR012001); contains InterPro domain TPP-binding enzymes, conserved site; (I Range:  from: 18012297    to: 18014566    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g48570.1    Description:  protein transport protein SEC61 gamma subunit, putative. Identical to Protein transport protein SEC61 gamma-3 subunit (SEC61G3) [Arabidopsis Thaliana] (GB:Q9SMP2); similar to protein transport protein SEC61 gamma subunit, putative [Arabidopsis thaliana] (TAIR:AT4G24920.1); similar to protein transport protein SEC61 gamma subunit, putative [Arabidopsis thaliana] (TAIR:AT5G50460.1); similar to unknown [Populus trichocarpa] (GB:ABK93099.1); similar to Os02g0178400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046076.1); similar to Os06g0653900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058242.1); contains InterPro domain Protein sec Range:  from: 18014898    to: 18015959    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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