Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                          --------->YAB1                                                     --------->YAB1                                                    <---------AHL20(2)                                               --------->TOE2(3)                                              --------->YAB1            <------ZmHOX2a(1)                 ----------->GT1 --------->GLK1(1)                          --------->GLK1(2) ---------ARR14(2)                         --------->ARR14(2) -------->ARR14(2)  --------->MYB46(3)     <---------ARR14(2)          <----------DOF2 --->MYB52(1)     ----------->RAV1(1)      <---------GLK1(2)    --------->YAB1<-----------GT1   cggatttacagagaggacaacaacaaatgtgtgttagaaatggcagaatcgtaaataataagaaaatcatacccttttaaaaaccatttctctctctaac  17946200                               --------->YAB1                               <-----------GT1                            <---------GLK1(1)                    ------->GAMYB                --------->AHL20(2)                              --------->MYB46(3)                 <-                <---------AHL20(2)                             -------->P --------->AHL20(2)       --          <---------ANAC58  --------->GLK1(1)                  ------>MYB83                ------>ZmHOX2a(1)          <---------ANAC58 <---------ARR11(3)                  ------>MYB46(1)         <-----------GT1      <----------DOF2      --------->ARR11(3)  ------>NtERF2  <---------ALFIN1      --------->AHL20(2)   taagtgttctttacttgttttaatacagagatatcacaatctcttgctctgcccaaacccatcccaaccccctaaaaaaaatacaattttttcctctgtt  17946300                                                                   --------->DAG2          --------->YAB1                                          ---------->DOF2          --------->AHL20(2)                                    <------ZmHOX2a(1)         <---------ATHB12            <------ZmHOX2a(2)       <---------HSFB2a(2)             --------         ----------->TBP             ==================================HOX2a_HOX2a    --------->AHL20(2)     ------------>CBF               <---------ARR11(3)       <---------LBD16        <---------TOE2(3) ---------DOF2                --------->CCA1(2)      <---------MYB52(1)   ----------->HVH21<--------- ------->TOE2(3)        --------->TOE1(2) ---------->DOF2    --------->HSFB2a(2)<----------DOF2  <---   tctttaatccaataaaaacagagagacctaagaaacgagatcaacaaagcccgtcgtttttttcgaggaaaagtgaatgaccctttaagaaaataactct  17946400     <------NtERF2    ----------->GT1    --------->LBD16                                                                               <--    <------NtERF2                          ---------->ID1                                        ----  <---------LBD16          --------->ARR14(2)                                                <------- ->ZAT6                    <---------ARR14(2)         ------>ZmHOX2a(1)                      <------- --GT1                     <---------GLK1(2)       <-----------GT1                           <------- ---------CBF <---------ANAC46     ---------->DOF2<-----------GT1               <-----------GT1 <----   attggccggagaaatggtggagactcgtcgattctcttaaagtttgtttttttttcctctcttcaaaatttttgttctgtttatactctgtaatggcgtt  17946500                                                                                                  <--                                                                                                 <---                                                                                                <----                                                                                               <-----                                                                                               <-----                                                                                              <------                                                                                              <------                                                                                              <------ -------AHL20(2)                                                                         --------->CCA1(2) ----->AHL20(2)        --------->ZAT18                                                  --------->ARR14(2) --ANAC58          --------->DAG2                                                       --------->ARR11(1) --ANAC46 --------->HSFB2a(2)                                     <---------ANAC46      --------->ARR11(3) --ANAC58 <---------HSFB2a(2)                  <----------DOF2<---------ANAC58          <---------ARR11(3) ------DOF2       ---------->DOF2      ---------->DOF2        <---------ANAC58          <---------ARR14(2)   ttaatttgatacctagaagttaaagtgaacaaattttgagagaaagtctcttttttttgttcttccctgtgtgtgtgagagagagagagagatatggcgg  17946600                                                                                           ------>ZmHOX2a(2)    <---------ZAT14                                                                       <------ZmHOX2a(2)    --------->ZAT14                                                                   ------>ZmHOX2a(2) ---------HVH21                                                  -------->P          <------ZmHOX2a(2) ------ARR14(2)                             <---------MYB52(1)   ------>MYB83        --------->CCA1(2) ---GAMYB                               <---------DOF5.7(2)    <---------MYB59       --------->ARR14(1) ----MYB46(3)                <---------ANAC58       --------->LBD16                 --------->ARR11(3) ----DEAR3(2)                <---------ANAC46 <---------MYB46(3) ------>MYB46(1)    --------->AGP1 ---DEAR3(1)                 <---------ANAC58<--------P  <---------ZAT14            <---------ARR11(3) ---ANAC46              <---------AtLEC2--------->MYB52(1)   --------->AGP1         --------->ARR14(2) ---RAP2.6(2)  <---------ARR11(3)     --------->DOF5.7(2)--------->ZAT14            <---------ARR14(2)   tttcagagcagagtcaagatgtgtttccatggcttaaatcgttaccggttgctccagagttcagacctactctagcagagtttcaagatccgatcgctta  17946700                                  --------->GLK1(2)                                 <---------GLK1(2)                            --------->CCA1(2)                           <---------ARR11(3)                           --------->ARR11(1)                           --------->ARR11(3)                           --------->ARR14(2)                        --------->HSFB2a(2)                        --------->HSFC1(1)                        <---------------AGL15                        <---------HSFB2a(2)                        --------------->AGL15                       <-----------------AGL1                       ----------------->AGL3                       <-----------------AGL3                       <-----------------AGL2                       ----------------->AGL2                  ------>ZmHOX2a(1)                   <---------HSFC1(2)                       ------>NtERF2                   --------->HSFB2a(1)               <---------ALFIN1<---------HSFB2a(2)                   --------->HSFC1(2)----------->GT1<---------ZAT14  --------->HSFB2a(2)           <-              >>>>>>>>>TBF1<---------ARR14(2)      ------>NtERF2  ------>ZmHOX2a(1)        --------->TOE2(3)     <---------YAB1<---------HSFB2a(1)      --------->GLK1(2) <---------ALFIN1--------->TOE2(3) -----   cattttgaagattgaagaagaagcttctagatatggaatctgtaaaattctgcctccactgcctcctccttccaaaaaaacctcgatttctaatctcaac  17946800                                    <---------RAP2.3(1)                                    <---------RRTF1(1)                                    ------>NtERF2                                   <---------RAP2.3(2)                                      ---------                                   <---------RAP2.3(3)                                      <--------                                   <---------RRTF1(3)                                    <------NtERF2                                   <---------RRTF1(2)                                    --------->ZAT2                                   <---------RAP2.6(2)                                   <---------At4g35610                                ----------->HVH21                                        <---------ZAT2                              --------->MYB52(2)  <-------MYC3                           --------->At4g35610                              <---------ANAC58    ------->MYC3                          ----------->RAV1(1)                              <---------ANAC58   <---------ANAC58                       ------>NtERF2                     --------->ATERF1(1)         <---------ANAC46                      <---------ATERF1(2)                    <---------DEAR4(2)           <---------ANAC58                      --------->ATERF1(2)                    ------>NtERF2  <---------ATERF1(2)                              --------->ANAC46                    <---------ATERF1(1)          <------NtERF2                      --------->ANAC58                    <---------ERF1 --------->ATERF1(2)                             <-------MYC2                    <---------RAP2.3(1)   ==================================================bZIP_DOF                   <---------RAP2.3(2)  <------NtERF2                              <-------PIF5                   <---------RAP2.3(3) ------>NtERF2                               ------->MYC2                   --------->ATERF1(2) <---------RAP2.3(1)                         ------->MYC3                   <---------DEAR3(1) <---------DEAR3(1)                     --------->ANAC58                   <---------ATERF1(2)<---------RAP2.3(2)           <---------PCF2--------->ANAC58                   <---------ANAC46<---------O2<---------ANAC58     --------->TCP16(1) <-----------RAV1(2)                   --------->DEAR3(1) <---------RAP2.6(2)           <---------TCP15(1)<------NtERF2                  <---------ABI4(1)<---------ANAC46                 <---------TCP20<-------MYC3                  <------NtERF2 ----------->TGA1------>NtERF2       --------->PCF5--------->ANAC58                  --------->RAP2.3(1)<------NtERF2------->MYC2      --------->PCF2--------->TGA1a                  --------->ATERF1(1)--------->ATERF1(1)           <---------TCP16(2)------>NtERF2                 <---------ATERF1(1)<---------ATERF1(1)           <---------MYB46(3)--------->ANAC58                 <---------DEAR4(2)<---------DEAR3(1)             --------->ABI4(2)------->PIF5         <------NtERF2<---------ANAC46<---------RAP2.3(3)     <---------DEAR3(1)<---------ALFIN1 <---        ------>NtERF2<------NtERF2 <---------bZIP60(1)  --------->ICU4 ============================RAV       <---------ATERF1(2)   <-------TEIL <----------DOF2<---------ICU4----------->RAV1(1) ----------       --------->ATERF1(2)--------->HSFC1(2)   <---------ANAC58  <---------AtMYB61--------->ANAC46===       <---------DEAR3(1) <---------HSFC1(2)   <---------ANAC46  --------->ALFIN1 <---------ALFIN1---       <---------ANAC46   <---------HSFB2a(1) <<<<<<<<<E2Fc----------->TGA1  --------->ANAC58    ====      --------->RAP2.6(3) --------->HSFB2a(1) <<<<<<<<<E2Fd<---------YAB1    --------->ANAC46   <---- --------MYB52(1)<---------RAP2.3(1)<---------ERF1<-------MYC2<---------DREB2C(2)------>NtERF2  ----- ---->MYB46(3)  <---------DEAR3(1)--------->RAP2.6(3)   <---------YAB1 <---------ALFIN1==============   cgttctctggcggcaagagcggcggcgagggttcgtgacggcggctttggcgcgtgtgattatgacggtggtcccacattcgccacgcgccagcagcaga  17946900 >At4g35610 -At4g35610 ---ZmHOX2a(2)                                          <------ZmHOX2a(1) ->RAV1(1)                                              <---------------AtSPL8 ===================HOX2a_HOX2a                     <---------ANAC46 --->ZmHOX2a(2)             --------->ZAT14       <---------ZAT14                                 --- ===================HOX2a_HOX2a                  --------->ALFIN1                              <----- -----ARR14(2)              <---------ZAT14   <------NtERF2     <----------DOF2             <-------- ---->ARR14(2)         <---------ZAT14 <-----------RAV1(1)  <---------ZAT14                 --------- ==RAV       <------ZmHOX2a(1)         --------->ALFIN1 --------------->AtSPL8     ---------->DOF2<--   tcgggttttgccctaggaaacagcgtccagtgcagagacctgtgtggcagagtggagaggagtactcttttggtgagttcgagtttaaagctaagaactt  17947000 ------>HSFB2a(2) -----DOF2                 ---------->DOF2                     <---------ZAT14                    <-- -ARR11(3)    --------->ANAC58    <---------WRKY38(1)          --------->ZAT14                   <--- >ARR11(3)    --------->ANAC58    <---------WRKY12            <---------DAG2                    <---- -------HSFB2a(2)     ----------->GT1      ------>NtERF2      <----------DOF2         <-----------GT1   tgagaagaattatctcaagaaatgtggtaaaaagagtcaactctctgcccttgaaattgaaacactttactggagagccactgtggataaacccttctct  17947100  Previous    Next  AGI:  At3g48430.1    Description:  REF6 (RELATIVE OF EARLY FLOWERING 6); transcription factor. similar to ELF6 (EARLY FLOWERING 6), transcription factor [Arabidopsis thaliana] (TAIR:AT5G04240.1); similar to hypothetical protein OsJ_034373 [Oryza sativa (japonica cultivar-group)] (GB:EAZ20164.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64178.1); similar to hypothetical protein OsI_036737 [Oryza sativa (indica cultivar-group)] (GB:EAY82778.1); contains InterPro domain Transcription factor jumonji (InterPro:IPR013129); contains InterPro domain Transcription factor jumonji, JmjN (InterPro:IPR003349); contains InterPro domain Zinc finger, C2H2-like; (InterPro:IPR Range:  from: 17946594    to: 17951731    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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