Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                    <---------AHL20(2)          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         <---------MYB46(3)      --------->AHL20(2)        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)             <---------AHL20(2) <------ZmHOX2a(1)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        <---------YAB1      --------->ICU4     XXXXXXXXXXXXXXXXXXXX>MIR862-3P            <---------AHL20(2)    <---------TOE2(3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       <---------YAB1       --------->YAB1   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    --------->AHL20(1)      <---------ICU4                xxx  xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       <---------AHL20(1)   --------->YAB1                   <--  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <---------AHL20(2) --------->AHL20(2)                <--- -------->GT1  ------->TEIL   --------->YAB1--------->AHL20(2) <---------AHL20(2)          <---------   gagttatatggtggatgtatttgaatcaatatttataaaattctaaaatattattaatatgatgttttaataaggattaaaacttcagttttttaacaat  17788900                    <---------ANAC58                    <---------ANAC58                    <---------ZAT6             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                       <---------AHL20(2)            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                        --------->AHL20(1)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                       <---------AHL20(1)          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                      --------->YAB1          <---------ANAC58                                        --------->AHL20(2)                <          <---------ANAC46                                        <---------AHL20(2)                -          <---------ANAC58           --------->AHL20(2)   <---------AHL20(1)                        -         <-------TEIL    --------->ANAC55(2)              --------->AHL20(1)                     <---       --------->ARR11(1)<---------ANAC55(2)              --------->AHL20(2)                     <---     ----------->ARR10<---------MYB52(1)    ----------->GT1      --------->YAB1             <-------- xxxxxxxxxxxxx>smallRNA(i)     --------->YAB1            <---------AHL20(2)  <-----------GT1--------- ---------HVH21     ----------->GT1  --------->YAB1  --------->AHL20(2)<---------AHL20(2) <---------AHL20(1) --------RAV1(1)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <---------AHL20(2)--------->AHL20(2) --------->AHL20(1) --GT1 <---------GLK1(2)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <---------AHL20(2)      --------->AHL20(2)   tgtcgcatagattcgtggtatagcgttacttaataacaattataaactgaaaaatttaaatattttataaaaataaaatttacaagttttaatatatatt  17789000                              <---------LBD16                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)         <---------AHL20(2)   --------->LBD16         --------->AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    --------->TOE2(3)   --------->AHL20(2)    <---------ZAT14                         <---------ANAC55(2) ----------DOF2          --------->ZAT14--------->ARR11(3)       ----------->GT1 -------->TOE2(3)   <---------LBD16     --------->GLK1(2)        <---------ANAC46                 --- -------->TOE1(3)   --------->LBD16  --------->AHL20(2)          --------->ANAC55(2)       <--------- ------AHL20(2)   <xxxxxxxxxxxxxxxxsmallRNA(s)                 --------->MYB52(1)      --------->ARR11(3) --------GT1      <---------LBD16    <---------AHL20(2)   ---------->DOF2        --------->WOX13(1) -AHL20(1)       --------->SPL7<xxxxxxxxxxxxxxxxsmallRNA(s)--------->DAG2 <-----------RAV1(1)    <--- >AHL20(1)     <-----------HVH21--------->LBD16       --------->YAB1  --------->ICU4   <---------ARR11(3)   aactttaaaatataaatcgtcccgcggtataccgcggattaaaatctagtttgctataaaaaaagtaacgtaaaaattgttgccaattagatattaccaa  17789100                                                 --------->ARR14(2)                                                 <---------ARR14(2)                     ----------->GT1             <---------ARR11(1)              --------->CCA1(2)                  <-----------ARR10                --------->ANAC55(2)            --------->AHL20(2)                   ------->TEIL                     <---------ANAC58        --------->AHL20(2)                      <---------CCA1(2)                 <---------ANAC58       <---------AHL20(2)                       <---------ARR14(1)                <---------ANAC55(2) ------->DOF2--------->ARR11(3)             --------->GLK1(2)       --------->ARR14(2) --GT1--------->AHL20(2)  ---------->DOF2  <---------GLK1(2)        <---------ARR14(2)   --------->At4g35610 ------ATHB12--------->AHL20(1)        --------->CCA1(2)<-----------GT1           <---------ANAC46   taaagaaatttaaaatatatgggttgaaaaaagagaagaagataagaatcgtatcttattacaacttgccaatttgctatcgtttcgtaacagctaaaca  17789200                                                                                 --------->YAB1                                                                              --------->WOX13(1)                                                 <------------CBF           ------------>CBF                      --------->ZAT6            --------->ATHB12  --------->ANAC58                <---------HSFB2a(2)           --------->TOE2(3)   --------->ANAC58             ------                --------->HSFB2a(2)--------->At4g35610          --------->MYB52(1)   <---------GLK1(1)       --------->MYB52(1)          <---------At4g35610       --------->YAB1------>NtERF2  <---------At4g35610   gttcaaataaaacggtgtctcgaaacactaaatagacagatgtcaatacctcattggatttaagcataacgcctcgctgccaattagaattcagcattcc  17789300                                                              --------->ARR11(3)                                                              <---------ARR11(3)                                                            --------->MYB59                                               <---------AHL20(2)      <---------AHL20(2)                 *TSS  --------->AHL20(2)<----------DOF2                   <-      --------->AHL20(2)           --------->TOE1(3)       ----------------------->TaNAC69(2)     ---      <---------AHL20(1)           --------->TOE2(3)   --------->DAG2   --------->ANAC46       ------ ------>CBF          <---------GLK1(2)---------->DOF2 ---------->DOF2 <-----------GT1        --------   aatttcattttattttctcacaaaattctccaaaaaacctaaaagtcaaataaatataaagtgaggtcttttctacgtctcttcaacattctcagagaag  17789400                                                                  <---------ANAC58                                                                  <---------ANAC58                                                                  <-------GAMYB                                                                 <------MYB46(1)                                                                 <------MYB83                                                                 <---------MYB46(3)                                                                 --------->MYB52(2)                                                                 --------->MYB55(2)                                      --------->At4g35610       <---------AtMYB61                 <-- --------RAP2.6(3)                 <---------At4g35610         <---------MYB52(1)                ---- ------>RAP2.6(2)                  --------->At4g35610       <---------MYB46(3)                <----- --->GLK1(2)------>ZmHOX2a(1) <---------CCA1(2)         <---------ANAC58     --------------->AtSPL3 -->DOF2 ------>ZmHOX2a(1) <---------TOE1(2)            <---------ANAC58 ----------->RAV1(2)   ------   ccgtcttcttcctccttcaatctctctcgttcgtatcatctgctctgcgatttcaatggcgagccgttggttgagacctgaggtactacttcattttgat  17789500                                                                               <---------GLK1(2)                                                                            <-------TEIL                                                                           --------->ARR14(1)                                                                          <---------ARR14(2)                                                                          --------->ARR11(1)                                                                          <---------GLK1(2)                                                                          --------->ARR14(2)                                                                      ------>ZmHOX2a(2)           ---------->DOF2                                           <------ZmHOX2a(2)        <---------------AGL15                                       --------->ARR11(3)        ----------------->AGL1          --------->WRKY38(1)         <---------ARR11(3)        --------------->AGL15         <-------GAMYB                 <---------AGP1       <-----------------AGL1         <---------At4g35610           --------->AGP1       ----------------->AGL2  <---------GLK1(2)                   <---------CCA1(2) --------DOF2               <---------MYB52(1)                  ------>ZmHOX2a(1)                  -- -->ZmHOX2a(2)            <---------MYB46(3)                    =============HOX2a_HOX2a           <- ----ARR11(3)     --------->GLK1(1)   --------->At4g35610      --------->TOE1(3)                   <- --->ARR11(3)     <---------GLK1(1)  <-----------RAV1(1)       --------->TOE2(3)         --------->ICU4   ctttgattttccctaaatcgaaatccatcggttgattctctgttgactacgtcttatttctaaatccttagatctagattcgattcttgtaagaattagc  17789600                                                               --------->GLK1(1)                                                         --------->MYB52(1)              <---------ANAC58                                                      --------->ZAT2         ------>ZmHOX2a(2)                                                      --------->At4g35610   <------ZmHOX2a(2)                                                   --------->At4g35610     <---------ARR11(3)                                                  --------->MYB52(2)   <---------------ANT                 --------->ANAC55(2)             --------->ZAT18     <-------GAMYB       --------->TOE2(3)                 <---------ANAC55(2)        ------>ZmHOX2a(1)  --------->At4g35610<---------ANAC58                 <---------ANAC55(1)       --------->TOE2(3)   <---------At4g35610<---------ANAC58                 <---------ANAC46       ------->TEIL  <---------At4g35610  --------->ARR14(2)                 <---------ANAC58       <---------ARR14(2)  --------->LBD16<---------ARR14(2) ------->O2 --------->YAB1              --------->ARR14(2)<---------LBD16  --------->ARR11(3) --------ANAC46  <---------ANAC58      <---------CCA1(2) -------->P  <---------SPL7      ------------ --------O2<---------YAB1          <---------ANAC46<---------At4g35610<---------MYB52(1) <---------ANAC58   ctcgtgaatcaatatgataacgtgtttcattgtttttaggtgtatcctttgttcgctgctaccggagttgccgttgggatctgtgcgttttccttgatca  17789700                    <-----------HVH21                 --------->ZAT14        <---------At4g35610           --------->GLK1(1)         ------>ZmHOX2a(1)           <---------GLK1(1)       ------>ZmHOX2a(2)                                     --------->HSFB2a(2)          <---------ARR14(2) <---------At4g35610       <-----------GT1             --------->ARR11(3)        --------->LBD16      <-------GAMYB <------------------------ANAC81         <---------ARR11(3)      <---------LBD16  --------->MYB59  ------>ZmHOX2a(1)                  --------->ANAC46    <----- --->AGL15--------->ARR14(2)<---------MYB46(3)  <---------YAB1        <----------DOF2------>ZmHOX2a(2)   gaaacatcaccggaaaccctgaagtcaggtctgttgatcctcctctgattttgatttttgctacttcagacccttttacacaattgatcttatggaatca  17789800  Previous    Next  AGI:  At3g48140.1    Description:  senescence-associated protein, putative. similar to germination protein-related [Arabidopsis thaliana] (TAIR:AT3G29970.1); similar to HvB12D [Hordeum vulgare subsp. vulgare] (GB:CAA54065.1); contains InterPro domain B12D (InterPro:IPR010530) Range:  from: 17789341    to: 17790534    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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