Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                            --------->LBD16                                                                         --------->ANAC46                                                                  <---------ARR14(2)                                                                 <---------CCA1(2)                                                                ----------->ARR10                                                             --------->At5g28300                   <X                                                   <---------ANAC46      --------->LBD16        <----                                                   <------------CBF     <---------LBD16         -----                                                  <---------MYB46(3) --------->ANAC46     <---------ARR14(2)                                        ------->TEIL<---------WOX13(1)------>NtERF2       --------->ARR14(2)                                       <---------ARR14(2)    <-------GAMYB<------NtERF2 --------->LBD16                                ---------->DOF2   --------->ATHB12--------->ARR14(2)   --------->ANAC46                              --------->ANAC46  <--------P  ----------->GT1           <---------LBD16                          <-----------GT1       <---------WOX13(1)<-----------GT1    --------->MYB52(1)                <---------ZAT14 *TSS   --------->ARR14(2)------------>MYB.PH3(1)    --------->MYB52(1)   aagagagactctaactggtacagaggttttactcgaaagaagaacctctggttgattggagacggttatatccgcccgggacaaaataaccggaatcgaa  17497400               ----------------->AGL3             --------->ARR14(2)             <---------ARR14(2)          --------->DEAR3(2)         ------->TEIL                                             ------>MYB46(1) --------->ANAC58                                                 ------>MYB83 --------->LBD16                                                  <---------CCA1(2) --------->ANAC46                                               <---------MYB111(1) --------->ANAC58       <---------TOE2(3)                       <---------MYB59            ---------- XXXXXXXXXXXXXXXXXXXMIR869.1                           <----------DOF2                 ---------->DOF2 -----ARR14(2) ====================================================================================== ---->ARR14(2)<------ZmHOX2a(2)                      <----------DOF2                --------->YAB1  <   tacccgaaatgaaccgatccaaaattagggtatagattagaaattcagtttcccgctcttttgctaccaaatctcagaaggcccaattttaaagagaaaa  17497500                    ----------->GT1             <------MYB46(1)             ----------->GT1             <------MYB83                                   --------->YAB1            --------->MYB59        <----------ID1          --------->ICU4        <---------AHL20(2)         ----------->GT1       --------->YAB1       <---------AHL20(2) ---------->DOF2           <---------AtLEC2      --------------->AGL15 ----------->GT1         <---------ANAC46                       <-------TEIL ->GT1<---------------AGL15 <----------ID1     --------->ARR14(2)------>ZmHOX2a(1)       --------->ARR14(2) =====================MADS_MADS  ---------->DOF2    <---------ANAC58              <---------MYB52(1) ---------YAB1     ------------------------>ANAC81  <---------ANAC58 ---------->DOF2     <---------ARR14(2)   ttatgtttttttatttggtaaattgaaaaaaagaaaaaagaaaaattcaaatttgcttgtaataatcctctcaaagagaattcagttagacgattcgtct  17497600                                                                             <---------------AGL15                                                                             --------------->AGL15                                                                            ----------------->AGL3                                                                            =========================                   <---------GLK1(2)                                        <-----------------AGL2                   --------->ARR11(3)                                    <---------GLK1(1)                 ----------->ARR10               <---------ANAC58<---------ANAC58               <---------MYB52(1)                <---------ANAC58<---------ANAC46             <---------MYB46(3)     ------------>CBF    <---------YAB1   --------->GLK1(1)          ------------>AtMYB77 --------->ANAC46 <---------HSFC1(2) ----------->RAV1(2)       ------>ZmHOX2a(1)  <-----------ARR10     --------->HSFC1(2) <---------MYB52(1)     ----------->RAV1(2)  ------->TEIL    <---------LBD16        <---------ANAC58              <-----   ctacttctcctgcaacggttagattttgaatctacgctctcaatttcggaagcttgttgtgatacttccgtctgggtttccatttctagggtttatgggg  17497700                                                                         --------->HSFB2a(1)                                                                         ----------->GT1                                                                         <------MYB46(1)                                                                  <---------ANAC58                                                                  <---------AtLEC2                                                                  <---------ANAC58                        <---------LBD16                         <---------YAB1            --------->MYB52(1)              ----------->GT1                                 --------->GLK1(1)        <---------ANAC55(2)      <---------------AGL15                                   --------->CCA1(2)        --------->ANAC46      --------------->AGL15                                  --------->ARR11(3)        --------->ANAC58     <-----------------AGL2                                  <---------ARR11(3)        --------->ANAC58     <-----------------AG                  <---------------------WRI1    <------MYB83  --------->ANAC55(2)     ----------------->AGL3               ---------->DOF2    <---------ARR14(2)        --------->ANAC55(1)     <-----------------AGL3            ----------->RAV1(1) ----------->ARR10       --------->YAB1 =====================MADS_MADS       <----------ID1  ---------->DOF2    <---------HSFB2a(1)    <---- ----ANAC46  <---------TOE2(3) >>>>>>>>>TBF1    <-------TEIL --------->ARR14(2)   <---------ATHB12   tttagtttctaaattagggtaaaatttggggaagaagaagacaacaaagatgcatataaaggagatatgcttggaaggtttcaaatcatacgcaacgagg  17497800                                                      ----------->GT1                                                    =========================HOX2a_HOX2a                                                   ==========================HOX2a_HOX2a                    --------->LBD16               --------->ARR14(2)                   --------->ANAC58               <---------ARR14(2)                   --------->ANAC58         <---------REM1(2)                  <---------LBD16    <---------ANAC46 --------->LBD16        --------->LBD16              <---------ANAC58--------->HSFB2a(2)       <---------ANAC58              <---------ANAC55(2)       <---------ANAC55(1)           <---------ANAC55(1)   --------->GLK1(2)       <---------ANAC58              --------->ANAC55(2)  --------->GLK1(1)       <---------ANAC46              <---------ANAC58<---------HSFB2a(2)      <---------LBD16               <---------LBD16<------ZmHOX2a(2)              --------->At4g35610    --------->ARR14(2)            <---------ARR14(2)<---------LBD16            <---------At4g35610---    <---------ARR14(2)       --------->ANAC46--------->MYB52(1)   <---------ARR11(3)       <---------HSFB2a(2) --ZmHOX2a(1) ----------->HVH21   --------->ARR14(2)------>ZmHOX2a(2) ------>ZmHOX2a(1)    >>>>>>>ZML2   acagtagttccgggttttgacccgcatttcaacgcgattacgggtctaaacggatccggaaaatccaacatcctcgattccatctgcttcgttctaggta  17497900                                                           --------->ZAT2                                                           <---------ZAT2                    <---------ZAT2              --------->ANAC58                    --------->ZAT2 <------ZmHOX2a(1)  <------ZmHOX2a(1)                    --------->TOE2(2)                    --------->At4g35610         --------->ANAC46                           --------->TOE1(2) ------>ZAT6        <---------At4g35610         --------->ANAC58       ---------->DOF2 <---------MYB52(1)   tcactaatcttcaacaagttcgagctgctaatctacaggaactcgtttacaagcaaggacaagctggaatcactagagccactgtttcagttaccttcga  17498000                                    <------ZmHOX2a(2)                                   <---------ARR11(3)                                   --------->ARR11(3)                        --------->MYB59                      <---------MYB52(1)                                                            <                     ------>ZmHOX2a(1)--------->WOX13(1)                      <---------TOE2(3)     <                     <----------DOF2<---------YAB1             --------->ANAC58               <------          --------->GLK1(1)   --------->ICU4        --------->At5g28300       <---------TOE1(3)     <    --------->LBD16  ======================HOX2a_HOX2a         --------->ANAC58        <---------ZAT6   caattccgagagaaatcgaagtcctttaggtcatgaagatcattcagagattacagtaactagacaagtaagtcttatttaaggttttagtgaaaaaagg  17498100                                                             <------MYB46(1)                                                             <---------MYB46(3)               <------                                                             <------MYB83                     <------                                                            <---------AtMYB61                <-------        <---------TOE2(3)                                   --------->MYB111(2)              -------- ---------ANAC46                       <---------ANAC46     --------->MYB111(1)              -------- ---------ANAC58                       <---------ANAC58     --------->MYB55(2)               <------- ---TOE2(3)                            <---------ANAC58     <---------MYB46(3)               <------- ---------ANAC58             <---------YAB1       <---------YAB1  ---------->DOF2            --------   tttcgtttttaagttttgttaagagtgaattttgtttgtttgtgtgtgtttgaagattgtagttggtggaaagaacaagtatttgatcaatgggaagctt  17498200      ------>MYB83      ------>MYB46(1)    ------->GAMYB                  <---------ZAT14    --------->AtMYB61              --------->ZAT14  --------->ANAC58                --------->ALFIN1  --------->ANAC58              <---------ANAC58 ---ANAC58                      <---------ANAC58 ---ANAC58                      <---------ANAC46 --ZAT2               <----------DOF2 ->ZAT2 <---------ATHB12<-----------GT1                 ------>ZmHOX2a(1)          <-----------GT1 ->HSFC1(2)        <-----------ARR10                   --------->TOE2(3)      <---------ANAC46 --HSFC1(2)        <---------ARR11(3) --------->At4g35610                     <---------ANAC58 --HSFB2a(1)       --------->GLK1(2)  <---------At4g35610       <---------YAB1<---------ANAC58 ->HSFB2a(1)      <---------GLK1(2)--------->ABI4(2)  --------->YAB1  <---------YAB1   gcacaaccaaatcaagttcagaatcttttccattcggtgcagcttaatgtgaacaatcctcattttctgattatgcaagggcgtattaccaaagttttaa  17498300  Previous    Next  AGI:  At3g47450.1    Description:  ATNOA1/ATNOS1/NOA1/NOS1 (NO ASSOCIATED 1); nitric-oxide synthase. Identical to Nitric oxide synthase 1 (NOS1) [Arabidopsis Thaliana] (GB:Q66GP9;GB:Q9STX8); similar to GTP binding [Arabidopsis thaliana] (TAIR:AT3G57180.1); similar to hypothetical protein OsI_005334 [Oryza sativa (indica cultivar-group)] (GB:EAY84101.1); similar to nitric oxide associated 1 [Nicotiana benthamiana] (GB:BAF93184.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42714.1); contains domain SSF52540 (SSF52540); contains domain PTHR11089 (PTHR11089); contains domain PTHR11089:SF3 (PTHR11089:SF3); contains domain G3DSA:3.40.50.300 (G3DSA:3.40.50.300) Range:  from: 17494053    to: 17497332    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g47460.1    Description:  ATSMC2 (Arabidopsis thaliana structural maintenance of chromosome 2). Identical to Structural maintenance of chromosomes protein 2-2 (SMC2-2) [Arabidopsis Thaliana] (GB:Q9SN90;GB:Q9STX7); similar to SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2) [Arabidopsis thaliana] (TAIR:AT5G62410.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN68529.1); similar to SMC2 protein [Oryza sativa] (GB:CAD59410.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42737.1); contains InterPro domain ABC transporter related; (InterPro:IPR003439); contains InterPro domain RecF/RecN/SMC protein, N-terminal; (InterPro:IPR003395); contains InterP Range:  from: 17497750    to: 17504380    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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