Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                       --------->ANAC55(2)                                                                                     --------->ANAC46                                                                                     <---------ANAC55(2)                                                                                     <---------HSFB2a(2)                                                                            --------->YAB1                                                                <---------ARR14(2)   --------->HSFB2a(2)                                                                --------->ARR14(2)  <---------LBD16                                                <------ZmHOX2a(2)         ------->TEIL--------->LBD16 ->ZAT6                              <----------ID1       --------->At4g35610     --------->ARR14(2) >ZAT18           <-----------GT1   --------->DEAR3(2)    <---------At4g35610     <---------ARR14(2)   actccaatctaatccagcattaaccaattcgcttcaaaaccgacaaatcgatccattctaagctcaaatccacatgaatcatcaaatccggaacatagat  17108000                                                                                     --------->ANAC46                                                                              <---------ICU4                                                                           --------->YAB1                                                                           <--------ATHB1                                                                          <---------ATHB12       <---                                                --------->TOE1(2)         <---------ATHB51       <---                                               --------->ANAC58        --------------->AGL15     ----                     --------->At4g35610       --------->HSFB2a(1)    ----------------->AGL3     ----                  <---------At4g35610          <---------HSFB2a(1)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                  <---------ZAT2        ---------->DOF2               ----------------->AGL2     ----                  --------->At4g35610<------ZmHOX2a(2)        <-----------RAV1(2)<-----------GT1 <---        --------->TOE2(3)            ===================================HOX2a_HOX2a--------->ANAC58      <---------ARR11(3)  <---------GLK1(1)    --------->ANAC58  <------ZmHOX2a(1) --------->ANAC58   tatagcgaaatctcaatggaagctgatgaaatctcatggatcaaaaggaacgtactagagagtatcaggaggtccaataatagttacgctccattcgaat  17108100                                                       ------>ZmHOX2a(2)                                                      --------->CCA1(2)                                                      <------ZmHOX2a(2)                                                     <---------ARR11(3)                                                     --------->ARR11(3)                                                     --------->AGP1                                                     --------->ARR14(2)                                                     <---------AGP1                                <xxxxxxxxxxxxxxxxsmallRNA(s)                                <xxxxxxxxxxxxxxxxsmallRNA(i)                            --------->ARR14(2)       <---------ARR14(2)                            <---------ARR14(2)     ----------->ARR10 ------AHL20(1)             --------->GLK1(2)    ---------->DOF2 ------AHL20(2)      --------->ZAT2         <---------ANAC58 ----->AHL20(2)      <---------ZAT2         <---------ANAC58 ----->AHL20(1)      <---------At4g35610=====================HOX2a_HOX2a ----->ARR11(3)      --------->At4g35610<------ZmHOX2a(1)                     --------->ARR14(2) ------ARR11(3)     ----------->RAV1(1) ======================HOX2a_HOX2a     <---------ARR14(2)   atattcttctcatcaactaaaccagcagagaatccatctacaggatgcttacaaagatctgaaaccaaaaaatcaaatcggattcaataagagagaattc  17108200                                  <-------TEIL                                 --------->ARR14(1)                                 --------->GLK1(2)                                 --------->CCA1(2)          <---------At4g35610                                <---------ARR14(2)       ---------->DOF2                                --------->ARR14(2)     <----------DOF2                                <---------GLK1(2)     --------->TOE2(3)                            <-                                --------->ARR11(1)  ------->TEIL                    <---------ANAC58       <-------TEIL   <---------ARR14(2)        <---------------AtSPL8              <---------ANAC58     --------->ARR14(2)       ----------->ARR10 --------------->AtSPL8            --------->ANAC58 <-     <---------ARR14(2) <-------TEIL           <---------ANAC58                   --------->ANAC58 <-    ------>MYB46(1)   <---------GLK1(2)        <---------ANAC46              <----------ID1       <--    ------>MYB83      --------->ARR14(2)       <---------ANAC58          >>>>>>>>>TBF1       <-------TEIL   aacaccaaattcgtagaagaaacagattcgttgagattcgcgagtgtttgtgtgtacctttaagctgtttctgaagaagaagacaagcttgtgagttcat  17108300                                   ===================HOX2a_HOX2a           --------->GLK1(1)       ------>ZmHOX2a(2)  <---------ARR14(2)               ===============================HOX2a_HOX2a  --------->ARR14(2)              --------->At4g35610 <------NtERF2                    <---------At4g35610 --------ANAC58                 <---------ZAT14 --------ANAC46                 --------->ZAT14            <------ZmHOX2a(1)                        - --------ANAC58        <---------At4g35610        --------->At4g35610  --------->CCA1(2)            < -------LBD16         <---------ARR11(3)       <------ZmHOX2a(1)   --------->CCA1(2)        <--------   ggcggattgtgagaaatcgagctagagcttccagtgatctgagagaagaggaagatgaagaggaagaagatagagatgggaattgaatagagagctttat  17108400                                                                                                    <             ---------->DOF2                                                                        -     ----------->GT1                                                                                <     <---------HSFB2a(1)                                                                           --     --------->HSFC1(2)                 --------------->AGL15                                      --     <---------HSFC1(2)                 <---------------AGL15                                  <-----    <---------------AtSPL8           *TSS                        <------------CBF            <------- -------->HSFB2a(2)              <---------AHL20(2)--------->ANAC58                         --------- ---------HSFB2a(2)           <---------ARR14(2)   --------->ANAC58                  ------->MYC3  <- --DOF2 <-------TEIL      <---------LBD16    --------------------->WRI1              <-------MYC3  <-   atcgagaaggttcaaaaaagatggaaactggggattttttttttttttttggtaagcatcgatgtttcattgttcatcaagggaacacatgggagtggag  17108500           ====================bZIP_DOF           --------->TGA1a           <---------TGA1a           <---------O2           ====================bZIP_DOF           <---------ANAC58           <---------bZIP60(2)      <---------LBD16   --------->At4g35610 ------>ZmHOX2a(2) ---------At4g35610 -------->GLK1(1) ------ZmHOX2a(2) ------->ARR14(2) ------->ARR11(3)             ---------->ID1                           ---------->DOF2 ----ANAC46<---------ANAC58  <-----------GT1                  <---------YAB1              ---------->DOF2 --ZAT14   --------->O2  <---------DAG2                      <---------AHL20(1)         <---------YAB1 >ALFIN1  ------->TEIL   <----------DOF2                     <---------AHL20(2) ------>NtERF2 --------ARR11(3)     <-----------GT1                      <---------YAB1  --------->ALFIN1<---------TOE2(3) --------ARR14(2)   <----------DOF2   --------->ANAC46     <---------AHL20(2) --------->ATERF1(1)   ggatctgctacggacgtgtcttctttacttttttcgcttccagccaatagaattgcgaaatattatttttgttcaaagtggccgactaatattaaagata  17108600                                                                           <----------DOF2                                                                         <---------DEAR3(2)              ---------->DOF2        --------->ANAC46         <---------ZAT14      --------->TOE2(3)              <-----------------AGL3   --------->ZAT18               <--------     <---------ICU4  <---------AHL20(2)          ------>ZmHOX2a(2)   <---------ZAT6        <---------AHL20(2)  --------->ANAC46----------->GT1  --------->ANAC46           --------->ZAT14              --------->AHL20(2)   gaacacatcattaacaaaaagagttaattttgcattcacacaaaatatggatcgttttagtgagtgtagtagtgtcggtttaatgcgatggaatttaatc  17108700                                                                    <------MYB46(1)                                                                    <------MYB83                  <--                                                                    <---------MYB46(3)           <---                                                                   <---------AtMYB61         --------                                                              <---------ANAC46          --------->LBD16                                                            <---------ZAT14           <---------LBD16                            ---------->ID1                  --------->ZAT14          <---------At5g28300                     --------->AHL20(2)            --------->AHL20(2)     <<<<<<<<<RAP2.2  <--------P                     <---------AHL20(2)            <---------AHL20(2)    <---------TOE2(3)<----------                <---------ARR11(3)               --------->TOE2(3)<--------P     <---------MYB46(3) --------->AtMYB61 <----------DOF2               <----------DOF2<-----------RAV1(1) <-----------GT1 -AHL20(2)      --------->ARR11(3)             <---------ATHB12 <---------ZAT6   --------->MYB52(2)--   cgacctccaaatttttgagttctttaatttgtttttttttttgttttcaatctttaatttagtttagtgttggtttagattgtttgttaccgggttagat  17108800                                                           ----------->GT1                                                         <---------ANAC58                                                         <---------ANAC46                                                         <---------ANAC58                                                         --------->ANAC55(2)         --------->AHL20(2)                            <---------ANAC58  <---------TOE2(3)           <---------ANAC46         <---------ANAC46 <---------DOF5.7(2)          <---------ANAC58         <---------ANAC58 --------->MYB52(1)           <---------ANAC58      <---------ARR14(2) -----GAMYB           <---------ANAC58              --------->ARR14(2) ------MYB46(3)       --------->ANAC55(2)          <---------HSFB2a(1) ->MYB52(2)           <---------ANAC46             <---------HSFC1(2) -HVH21 --------->YAB1<---------ANAC58             --------->HSFB2a(1) ------->DOF5.7(2)    <---------ANAC55(2)          --------->HSFC1(2)   ggttaacgaataaaaatactgatttcgtgattcggtgtgttttgatatttcgaagtttcgcgtgttaaatagagttgaaattttgtttttgtggagaaac  17108900  Previous    Next  AGI:  At3g46460.1    Description:  UBC13 (ubiquitin-conjugating enzyme 13); ubiquitin-protein ligase. Identical to Ubiquitin-conjugating enzyme E2 13 (UBC13) [Arabidopsis Thaliana] (GB:Q42541); similar to UBC14 (ubiquitin-conjugating enzyme 14), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT3G55380.1); similar to ubiquitin-conjugating enzyme [Arachis hypogaea] (GB:ABI84264.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608); contains InterPro domain Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135) Range:  from: 17106863    to: 17108437    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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