Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                           <----------DOF2               ----------->RAV1(2)                                               --------->YAB1               <---------ANAC58                 >>>>>>>>>>>>>>>>>LFY             --------->TOE2(3)               <---------ANAC58 --------->GLK1(1)                               <---------YAB1             <-----------GT1 <---------YAB1    <-----------GT1                 <---------TOE2(3)   tacaaaacttataagttacctgcttctctttctgatttcttcttgaattctaccattgtgacatattgatcaatggaagtttatgttaatttttgagaga  16928200                                                             --------->ANAC58                                                             --------->ANAC58                 <------                                                       <---------ICU4                         <------                  <---------ARR14(2)            <---------AHL20(2)                   ------->TEIL                  --------->ARR14(2)         --------->ARR11(3)                   --------->ANAC55(2)             <---------ANAC46                <---------ARR11(3)             <---------ANAC46 <-------           <-----------RAV1(1)        <---------ANAC46--------->ICU4     <---------AtMYB61   --------        <----------DOF2         <---------ARR11(3)  --------->YAB1    <-----------RAV1(1)  --------->YAB1  <---------AHL20(2)            --------->ARR11(3) <---------YAB1 <---------ARR14(2)<---------CCA1(2)   gttttaaattcttttgtggggattttgtttagaacatcttgagtatagattttatgataatgaacgaaaatactggtggtgtttatgtatctctaataaa  16928300       <---------ANAC58       <---------ANAC55(1)       --------->ANAC55(2)       <---------ANAC55(2)       <---------ANAC46       <---------ANAC58      <-----------------------TaNAC69(2)    <---------MYB52(1)   --------->At4g35610   <-------GAMYB                                  --------->AHL20(1)   <---------At4g35610                            --------->ARR11(3)                             ---- ---ICU4                              <---------YAB1                                   <---------AHL20(2) ---AHL20(2)                ------->GAMYB         <---------AHL20(1)                  <---------ARR11(3) --ATHB12                  <---------ALFIN1 ----------->GT1                           --------->ARR11(3) ->AHL20(2)           --------->TOE2(3) ---------->DOF2     ---------->DOF2           <---------AHL20(1)   tatgcagttgcgtaagaacataaacatcaacacacttcttatgaaagagttatatattgttgaaaagtatagttgtatagtagtagtatatatttccaaa  16928400                                                      --------->YAB1                                                     --------->AHL20(2)                                                   --------->YAB1                                                 <---------AHL20(2)                                 -                   <---------ZAT14               --------->AHL20(2)                               ---                   --------->ZAT14           --------->YAB1                                     -----       --------->At4g35610                 ------>MYB83  <---------ICU4                 <---------WOX13(1)       <---------At4g35610                 ------>MYB46(1)  <-----------GT1            <------------CBF  <---------bZIP60(1)                    --------------->AGL15<---------YAB1       <---------At4g35610 ----->YAB1  --------->TOE2(3)           <---------MYB59--------->ICU4             <---------ZAT2<---   gatgacttcagattacattagtatacagtagtagtatttgataccaaatataaaaataaaaattactatagcattgttttagtccagctaattgatttta  16928500                                                                                            <--------                                                                                       --------->ANAC58                                                                                       --------->ANAC58         ---------->DOF2                                                            <---------ZAT18        <---------AHL20(2)                                                          --------->ZAT18    --------->AHL20(2)                                                     ==========================    <---------AHL20(2)                                                     <----------DOF2 ------>ZmHOX2a(1)   --------->ICU4                                                   ------>ZmHOX2a(1)<---------ALFIN1 -------->AHL20(2)                                              <---------ARR14(2)  <---------ZAT14 -------->GT1             <---------ANAC58                      --------->ARR14(2)  --------->ZAT14 ----->DOF2               <---------ANAC58                      --------->GLK1(2) <---------At4g35610 ------TOE2(3)      --------->DAG2    <----------DOF2      ---------->DOF2*TSS    <---------ZAT18   aagtaattaataaaaggcccataaggcttcgtgccttcttctttctatataggcccttcaaaaaagaatccttctctctttttctgcgcactccttcgtt  16928600                  ------->TEIL                  <---------ARR14(2)                  --------->ARR14(2)             <---------ANAC46           <---------ZAT14           --------->ZAT14           --------->ZAT18       --------->TOE1(2)      <---------ANAC46      <---------TGA1a      --------->TGA1a                <---------At4g35610      <---------ANAC58           --------->ANAC46      <---------ANAC58          <---------------------WRI1    --------->MYB52(1)         --------->ANAC46   ------->GAMYB <---------CCA1(2)   --------->At4g35610   =============MYC_MYB        --------->ANAC58  <---------MYB111(2)          --------->ANAC58  --------->MYB46(3)        <---------ZAT18  <---------MYB46(2)        --------->ZAT14                                                         <  <---------MYB111(1)       --------->ZAT18                                  ---------->DOF2     <---  <---------MYB52(2)     <---------ANAC58                             <------NtERF2        <---------ARR14(2)  <---------MYB55(2)  ------>ZmHOX2a(1)                              --------->LBD16       --------->ARR14(2) -TOE1(2)--------->ZAT18 <---------ANAC46          ----------->GT1  <---------LBD16     <---------HSFB2a(2) ===============bZIP_DOF <---------ANAC58      >>>>>>>>>TBF1       <---------LBD16     <---------LBD16   tccaactaacgtgcgcagtgtatcctatcgtgcacgcgaagcagacgaagaagaagtaaaatagaagaagccgggaaacaaaagctaaatcgggaactgg  16928700                                                                                             --------                     --------->TOE2(3)                                                       <-------             --------->LBD16                                                                ---------             <------NtERF2                                                                 <---------            --------->ANAC46                                                              <---------At4g35610            --------->ANAC58                                                 ------>ZmHOX2a(2)   <---            --------->RAP2.6(2)                                            <---------ARR11(3)<-------            --------->ANAC58                                               --------->ARR11(3)------>NtERF2           --------->SPL7                                             <-------TEIL        --------->LBD16          --------->ATERF1(1)                                       <---------MYB52(1)   --------->ANAC46         <---------SPL7                                            --------->LBD16      <---------LBD16 ----------DOF2      --------->TOE1(3)                            --------->ANAC46      <---------HSFB2a(2) ------ANAC46------>NtERF2       <---------GLK1(2)               <---------LBD16    <----------DOF2<-   cgcattttagtcgtccgccataaccttcgctctctgattcttccgattacatcggttttcttctctctccggtacatgatcttcttctttcccgcagccg  16928800                                                              <----------DOF2 ->At4g35610                                                 ------>ZmHOX2a(2) --At4g35610                                               <---------ARR11(3)                  ------ >DEAR3(1)                                           <---------ARR14(2)                        <----- --RAV1(2)<-----------GT1                            <---------GLK1(2)                         <----- ------ARR14(2)                                      --------->ARR11(3)                      <------- --ZAT2<---------GLK1(1)    ------>ZmHOX2a(2)      ----------->ARR10                  <-------TEIL <- ------TEIL      <----------DOF2              ------->TEIL --------->ARR11(3)  <----------DOF2<------   attcattcgatttctccctcttttgtttgatctaattcgatttcgatgaaactcagattttgatctttgagtttttgtttcctttagattcaatggctgc  16928900  ------->PIF5  <-------PIF5                                                          ------>ZmHOX2a(2) ----------->RAV1(2)                                                   --------->At4g35610 <---------ZAT2                                                        <---------At4g35610 <---------At4g35610                                            <-------TEIL --->At4g35610                                              <---------------AtSPL8 ----ZAT2                                                 --------->MYB52(1) ----At4g35610          <---------YAB1            <---------WOX13(1)  <---------AGP1 --RAP2.3(3)    <---------ZAT2                  --------->ATHB12--------->SPL7 --------ALFIN1 <---------At4g35610            <---------YAB1 <---------SPL7                        < ---ATERF1(1)   --------->At4g35610         <----------DOF2 --------------->AtSPL3   ----------------   tccacctgctagagccagagctgattacgattatctcattaagcttcttttgattggagatagcggtacgttgatctgaaacctctccgatgtttttatc  16929000                                                                                           ------>ZmHOX2a(2)                                                                                         <---------ARR14(2)                                                                                         --------->ARR14(2)                                                                                    <---------ANAC58                                                                                    <---------ANAC58   ------>ZmHOX2a(2)                                                             <---------MYB52(1)  <------ZmHOX2a(2)                                                             <-------GAMYB --------->ARR14(2)                                                            ------>ZmHOX2a(2) <---------ARR14(2)           <---------GLK1(1)                       <---------YAB1<---------ANAC46 ---------DEAR3(2)            --------->GLK1(1)             <---------YAB1   <---------ARR11(3) ----->WRI1         ------->TEIL                        --------->At5g28300  --------->ARR11(3)<-----   gtcgatccgttgaaatttgttgaatctgtttgatttccattgaatcgatctattccactgtgatttttgtttgtgattagatcgttgtgtggatcggtgt  16929100  Previous    Next  AGI:  At3g46050.1    Description:  kelch repeat-containing F-box family protein. Identical to Putative F-box/Kelch-repeat protein At3g46050 [Arabidopsis Thaliana] (GB:Q9LX87); similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT5G03000.1); similar to 117M18_27 [Brassica rapa] (GB:AAZ66946.1); contains InterPro domain Kelch repeat type 1 (InterPro:IPR006652); contains InterPro domain Kelch-type beta propeller (InterPro:IPR015915); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain Kelch related (InterPro:IPR013089); contains InterPro domain Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043) Range:  from: 16927057    to: 16928169    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g46060.1    Description:  ARA3; GTP binding. Identical to Ras-related protein ARA-3 (ARA-3) [Arabidopsis Thaliana] (GB:P28186); similar to Ras-related GTP-binding family protein [Arabidopsis thaliana] (TAIR:AT5G59840.1); similar to unknown [Populus trichocarpa] (GB:ABK94933.1); similar to ethylene-responsive small GTP-binding protein [Lycopersicon esculentum] (GB:AAD46405.1); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras (InterPro:IPR013753); contains InterPro domain Small GTP-binding protein; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579) Range:  from: 16928574    to: 16931003    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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