Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   --------->TOE2(3)                --------->ANAC58                --------->ANAC55(1)                <---------ANAC55(2)                ----------->GT1               <-------TEIL             <---------ARR14(2)               <---------AHL20(2)             --------->ARR14(2)              --------->AHL20(2)         <---------LBD16                     <---------AHL20(1)    <-----------HVH21                        <---------AHL20(2)                                   <--  <---------AtMYB61           <---------At4g35610                             <----------DOF2 ------- ---------ANAC46--------->ANAC58     <---------ZAT14              <---------MYB52(1)        <-------- --------RAV1(1)--------->ANAC55(2)  --------->ZAT18             --------->TOE2(3)      --------->YAB1   tgttgtggtcactcggatacgtaaaaacttggagatgagtagactaattaatttcagtttttgaattcgttagacttgcgatttatgaaatcaaaatcat  16926700                                             <---------ZAT18 <---------ANAC58                         <---------ANAC58 <---------ANAC58                         <---------ANAC46                     <---------AHL20(1) --------DOF2     <-----------RAV1(1)     <---------ANAC58                <---------AHL20(2)       <- -->YAB1    --------->TOE2(3) <---------------AGL15                       --------->AHL20(2)     ---- -ARR11(3) ----------->GT1    --------------->AGL15            --------->TOE2(3)            ---------   ctttcttgacttatcgttatatgtggcatttactcattttagtctcgtgctcttcttgtttgttttcttaaaacattttaatatgtttttcatttacaat  16926800                                                                                                 <---   --------->YAB1                                                                               ----- ------TEIL                                      --------->ARR11(3)                  --------->ANAC46 ----->YAB1                    ----------->GT1   <---------ARR11(3)      ----------->GT1        ----- --->CBF                   --------->ZAT18   ---------->DOF2            ----------->GT1         <----   gttcatcaaaatacaaacaaatctctgagggaactgtgaaaattcgaaaaagattttagaaatactgacaaaataagttaaaattctaagaaacaaaatt  16926900                                                               --------->AHL20(1)                                                               <---------AHL20(2)                                                          <---------MYB52(1) ------AHL20(2)                                --------->ANAC55(2) ---->AHL20(2)                                <---------TOE2(3)--------->AHL20(2)                 --- ---->AHL20(1)                                --------->MYB59  <---------AHL20(1)                 --- -----AHL20(2)                    <---------TOE2(2)      --------->TOE2(3)              ------->GAMYB   taatagttttccttccaacaaggtttctatgctacataggtataattttaggtattcttcgttaataaatttgaaggaaataactaataacgcacaaaaa  16927000                                                                                                   <-                                                                                                   --                                                                                                   <-                                                                                                   --                                                                                                   <-                                                                                                   --                                                                                                 ----                                                                                                -----                                                                                                -----                                                                                           ------>NtERF2                                                                                           --------->ABI4(1)                                                                                           <---------ATERF1(1)                                                                                          <---------ALFIN1                                                                                          --------->DEAR3(1)                            --------->HSFB2a(2)                                           --------->ANAC46                            <---------HSFB2a(2)               ---------->DOF2            --------->DEAR4(2)            --------->TOE1(2)                                 =======================================            --------->TOE2(3)                            <----------ID1                 <---------At5g28300            --------->TOE2(2)--------->ANAC46          --------->YAB1         --------->YAB1  <------ ------>TOE2(3)         --------->WRKY12              ----------->TGA1       <---------ATHB12 ------>NtERF2 ------>TOE1(3)        --------->DOF5.7(2)        ------------>CBF        <---------AHL20(2) --------   ccctaaatcaaaaacctaagaagacgtttaccagaaacaaaaaaactaagaagacaatgacgacgaaagagaagaataaatcatcaaactcaccgcctcc  16927100                     --------->ANAC58 --------bZIP60(1)   --------->ETT(2) ------->O2          --------->ANAC58 --------TGA1a       <---------ETT(2) ------->TGA1a      --------->SPL7 --------O2     <---------LBD16 ------->bZIP60(1)--------->LBD16 -->NtERF2      --------------->AtSPL3                    --------->GLK1(2)                         < ---->DEAR3(1) --------->MYB52(1)                        <---------GLK1(2)                          < ------>HVH21  <---------DOF5.7(2)                       <---------ARR14(2)                         = ========bZIP_DOF <---------SPL7            <---------ANAC58                                  <------ ---ATERF1(1)--------->DOF5.7(2)            <---------ANAC58                                 -------- ->DEAR3(1)  <---------MYB52(1)        <---------MYB52(1)--------->ARR14(2)                  <-------   gacgtcgttttcttcgttaccggacgacatcgttctcaactgtttggctcgtgtctccagattccattatccaactctatccctagtctgcaagggtttc  16927200                                     ------>ZmHOX2a(2)                                     ==================================HOX2a_HOX2a                          --------->AtLEC2                          --------->ANAC55(1)                          --------->ANAC58                    <---------ZAT2  <------ZmHOX2a(2)                    <---------At4g35610                    --------->At4g35610                --------->LBD16     ===================================HOX2a_HOX2a               --------->TGA1a     <---------ARR14(2)               <---------TGA1a     <---------ARR14(3)       =====================================HOX2a_HOX2a       ====================================HOX2a_HOX2a       ------>ZmHOX2a(1)<---------ALFIN1       --------->HSFB2a(2)--------->ANAC58 ---------ATHB12<-----------HVH21  <---------ARR11(3)                        ----------->ARR10 ------ZmHOX2a(2)<---------MYB52(1)--------->ARR14(3)                    --------->At4g35610 =============HOX2a_HOX2a --------->ANAC46                               <---------At4g35610 ---ARR14(2)   --------->O2        --------->ARR14(2)           ------>ZmHOX2a(1) ->GLK1(1)     <---------O2  ----------->RAV1(1)            <---------ARR14(2) --GLK1(1)     <---------ANAC46    --------->ARR11(3)       --------->ARR14(2)           <------ZmHOX2a(1)   cgatcactcctagactcccgtgagctccacgcaacacgatcttgcatcggaaaaaccgagagtttcctctacgtctgcttagacctgcataggaattgct  16927300                                                                                   ------>ZmHOX2a(1)                                                                               --------->ARR14(2)                                                                               <---------ARR14(2)                                                                              --------->WOX13(1)                                                                        <---------ANAC58                                                                        <---------ANAC55(1)                                                                        <---------ANAC55(2)                                          ------>MYB46(1)               <---------ANAC58                                          ------>MYB83                  --------->ANAC55(2)                                          --------->MYB52(1)            <---------ANAC46                                        <---------MYB59              <---------MYB52(1)--------->MYB46(3)                  <---------MYB46(3)    <---------MYB46(2)          <-------GAMYB --------->TOE1(3)                  ----------->GT1--------->LBD16           ------>MYB46(1) <-----------HVH21     ----              --------->ANAC46  --------->LBD16            ------>MYB83--------->MYB52(2) <---------MYB52(1)          ------>ZmHOX2a(1)    <---------LBD16 <---------GLK1(2)<---------MYB52(1)--------->TOE2(3)   atccagactgtcctccacgatggtttatagtttccccgattaccaaacagaaactgaaacctatcccttcggttacttgtcaatcctcaaccgttgtatc  16927400                          --------->HSFB2a(1)                          --------->HSFC1(2)                                                        -                          <---------HSFB2a(1)                                                      --                          --------->ATERF1(1)                                                      --                          <---------HSFC1(2)                                                      ---             <-----------GT1                                                              <------NtERF2           --------->CCA1(2)                               --------------->AtSPL8       <---------ANAC58          --------->ARR11(3)                       <------ZmHOX2a(1)                    <---------ANAC58          <---------ARR11(3)  <---------ANAC46  <-----------RAV1(2)                     <---------ANAC46 ----->WOX13(1)--------->ANAC55(2)  <---------WOX13(1) <---------WOX13(1)            <---------DEAR3(1)   aatcggttcaaagatttacataatcggaggcttcgttgatggacatagtagcaggagattgatagtactcgattgtccatctcatggatggcgtagactc  16927500                              <---------At4g35610       --------->ANAC46                              <---------ZAT2            --------->ANAC55(2)                              ----------->RAV1(2)       <---------ANAC55(2)                              --------->At4g35610    ------>ZmHOX2a(2)                              --------->ZAT2        --------->CCA1(2)           ------->TEIL     <-----------RAV1(2)     <------ZmHOX2a(2)      <---------ANAC55(2)  <---------At4g35610     <-----------ARR10      <---------ANAC55(1)  --------->At4g35610     --------->ARR11(3)      <---------ANAC58     <---------ZAT2          --------->AGP1      <---------ANAC46     --------->ZAT2          <---------ARR11(3)      <---------ANAC58    ================RAV      <---------ARR14(2)     <-------TEIL         ----------->RAV1(1)      --------->ARR14(2)                               < -------->LBD16        --------->ANAC58          ----------->ARR10                           -------- ------->ANAC46        --------->ANAC58      --------->YAB1--------->ATHB12                --------->ARR14(2) ------->LBD16         --------->ANAC46    <---------------------WRI1                      <---------ARR14(2) ------>LBD16        ---------->DOF2      --------->MYB52(1) <---------WOX13(1)           <------ZmHOX2a(1)   cccgagatgcgtgtacctcgacaaaacgcagcagctgatgtaatcaacgataagatctacgtgattggaggctctagttccaacaatatcgaggattggg  16927600  Previous    Next  AGI:  At3g46040.1    Description:  RPS15AD (ribosomal protein S15A D); structural constituent of ribosome. Identical to 40S ribosomal protein S15a-4 (RPS15AD) [Arabidopsis Thaliana] (GB:Q9LX88); similar to 40S ribosomal protein S15A (RPS15aF) [Arabidopsis thaliana] (TAIR:AT5G59850.1); similar to RPS15A (RIBOSOMAL PROTEIN S15A), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G07770.1); similar to RPS15A (RIBOSOMAL PROTEIN S15A), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G07770.2); similar to unknown [Solanum tuberosum] (GB:ABA46758.1); contains InterPro domain Ribosomal protein S8; (InterPro:IPR000630) Range:  from: 16925524    to: 16926744    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g46050.1    Description:  kelch repeat-containing F-box family protein. Identical to Putative F-box/Kelch-repeat protein At3g46050 [Arabidopsis Thaliana] (GB:Q9LX87); similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT5G03000.1); similar to 117M18_27 [Brassica rapa] (GB:AAZ66946.1); contains InterPro domain Kelch repeat type 1 (InterPro:IPR006652); contains InterPro domain Kelch-type beta propeller (InterPro:IPR015915); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain Kelch related (InterPro:IPR013089); contains InterPro domain Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043) Range:  from: 16927057    to: 16928169    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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