Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                             --------->GLK1(1)                                                           <---------GLK1(1)                                                    --------->ZAT2                                                    <---------ZAT2                                                    <---------At4g35610                 ----------->HVH21                                                    --------->At4g35610    <---------ANAC58                                                <---------ZAT2             <---------ANAC58                                                --------->ZAT2xxxxxxxxxxxxxxxx>smallRNA(s)                                                <---------STY1(2)          xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)        ---------->DOF2                         --------->STY1(2)    <---------REM1(1)--------->YAB1 --------WRKY38(1)                             --------->ANAC58   <---------MYB46(3)  <---------ICU4 --------WRKY45             <---------ALFIN1   --------->ANAC58 <---------At4g35610  <---------ATHB12 >ZmHOX2a(1)      <-------TEIL              <---------At4g35610 <-------GAMYB----------->HVH21   gtcaacttgccaaagtaagattcaatagccaaacctctctgtttgcagcaagctagctcagatttcagttgttgtagtcgtgacccattcatgacagaga  16824500                                  --------->O2                                  --------->bZIP60(2)                                  <---------ALFIN1                         ------>ZmHOX2a(2)                        <------ZmHOX2a(2)                       --------->ARR14(2)                       <---------ARR14(3)                       --------->ARR11(3)                       --------->ARR14(3)                       --------->AGP1                       <---------ARR11(3)                       <---------AGP1                             <---------MYB46(3)                       <---------ARR14(2)                         <------MYB83           ----------->HVH21            <---------HSFC1(2)    --------->REM1(1)               <------MYB46(1)     ------>ZmHOX2a(2)            --------->HSFC1(2)  ----------->RAV1(1)             <--------P            <xxxxxxxxxxxxxx         <---------At4g35610    <---------ALFIN1       <---------ARR14(2)      --------->ICU4  <---------DAG2      <---------CCA1(2)              <---------MYB46(3)     <---------YAB1  <----------DOF2 ----------->RAV1(1)      --------->YAB1------>ZmHOX2a(2)--------->YAB1 --------->ANAC46   acctctttttcagatgtttcccacagatcttgagccacatctctatgagaaatggtggatcgaagagttggttcaattgtcattttgatccatgacacaa  16824600                                                                                       --------->LBD16                                                                                      <---------ANAC58                                                                                      <---------ANAC46                                                                                      --------->ANAC55(2)                                                                                      <---------ANAC55(1)                                                                                     <---------LBD16<                                                                       --------->GLK1(1)   <---------bZIP60(1)                                                                       <---------GLK1(1)   --------->GLK1(1)                                                                   <---------HSFB2a(2)<---------ANAC58              <---------SPL7                                   --------->TOE1(2)<---------DAG2    --- --------->ARR11(3)               <XXXXXXXXXXXXXXXXXXXXMIR399A <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)-- <---------ARR11(3)             --------->LBD16               --------->MYB46(3)<----------DOF2   <-- xxxxxxxxsmallRNA(se3)        <-----------RAV1(2)<---------ANAC46  --------->HSFB2a(2)<---------ANAC55(2)   gaagagcttgaatcgtcgtccagtcttcaaaatcaggggaagtctcttctggtttggaaattgaaccatcgagaaatccatactttttccgtgatatcaa  16824700                                                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                                                       <------ZmHOX2a(1)                                                                     --------->LBD16                                                                  ------>NtERF2                                                              <---------RAP2.3(2)                                                              --------->ANAC55(2)                                                              <---------ANAC55(2)                     <---------ALFIN1                         <---------RAP2.6(2)             -------                   <---------ALFIN1                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                  <---------ZAT18                            --------->RAP2.6(3)         <---------At4g35610 ---------MYB46(3)--------->ZAT18                           --------->MYB52(1) --------->At4g35610 ---->MYC3     --------->ANAC58                 xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <-----------HVH21 ------->ALFIN1--------->ANAC58   <---------ANAC58       <---------------AtSPL3<---------At4g35610<-- -----MYC3   ---------->DOF2      <---------ANAC58<------ZmHOX2a(1) <-----------RAV1(2) --------->MYB59   cgtggttcgaaaaccacaagcccactcttcatagttgcttcccttcaagagaggatgagagattacggctccaggattatcagcagaagtcaggtcataa  16824800                                             <-------GAMYB                                             --------->At4g35610                                       <---------ANAC58                                       <---------ANAC46                                       <---------ANAC58                                  <-----------RAV1(1)                                  --------->ALFIN1                               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                               <---------AtMYB61                           <---------At4g35610                           <------NtERF2<----------DOF2                           --------->At4g35610            ----------->GT1                   xxxxxxxxx                         =====================RAV        --------->HSFB2a(2)             <xxxxxxxxxxx             ------>ZmHOX2a(1) <---------DEAR3(1)        <---------HSFB2a(2)       <----------DOF2      --------->KAN4(2)  <-----------RAV1(2) <---------At4g35610                  <---------ANAC58 -->ICU4  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)----------->HVH21                  <---------ANAC58  - ----ZmHOX2a(1)   --------->ZAT14 <---------REM1(1)     *TSS      --------->AHL20(2)    <xxxxxxxxxxxx   ggagagattgttctccttacttcagtcgcagcggaggtgttgctttcagttgacattgtcgagaaaaaaaaaatcaagagttttgcttttcaggctctga  16824900                                                                                                <----                                                                                                -----                                                                                                -----                                                                                               <-----                                                                                           <---------ANAC46                                                                                        --------->O2                                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <---------O2                                                 <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     --------->TGA1a                                               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     <---------TGA1a     <---------TOE2(3)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)             xxxxxxxxxxxxxxx    --------->DAG2          ------->TEIL   --------->YAB1                            =============MYC_MYB   ---------->DOF2        <<<<<<<<<EIN3 --------->YAB1                               ------->GAMYB--- xxxxxxxxxxxxxx>smallRNA(si3)       <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)               --------->MYB46(3) xxxxxxxxxxxxsmallRNA(l2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                 <---------ZAT14 xxxxxxx -------->TOE2(3)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  ----------->RAV1(1)   ----------->RAV1(1) xxxxsmallRNA(i)     ------------>CBF<------------CBF     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxx   taccataaaggaatacagagttcgacaatgtatatgtgttattgatcatcaagagaagcatacaacatatatagatcgactatacaacagacgtcgtgaa  16825000                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                       --------->LBD16                                      <---------ANAC55(2)                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                             ---------->DOF2                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                          ------>ZmHOX2a(2)                         --------->CCA1(2)      <---------ARR14(2) <------ZmHOX2a(2)     --------->HSFB2a(1)--------->AGP1--------->ANAC46     <---------HSFB2a(1)<---------ARR14(2)  <------ZmHOX2a(1)     --------->ARR11(3)  ==============================HOX2a_HOX2a  ===============================HOX2a_HOX2a           --------->YAB1    --------->KAN4(2) -----ARR14(2)          <---------ARR11(3)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) -->TEIL   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)      --------->YAB1      <----------TaMYB80 ---->GLK1(2)           --------->ARR14(2)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ----CCA1(2)         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              <---------KAN4(2)            < xxxxxxxx>smallRNA(si3) <---------AGP1--------->ANAC55(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     <x ------>TOE1(2)<---------At4g35610<---------GLK1(1) <---------ICU4     --------->ARR14(2)       <xxxx xxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)   <---------ARR14(2)  xxxxxxxxxx xxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxx>smallRNA(i)--------->ICU4   ----------->GT1        <xxxxxxxxx   tctaggaaaatccctacagttgagaagatctaaaagctatccgtaactatacaattatcagcatctaatagagtatattctcagaaaaataaaccaagtg  16825100                                                                                          --------->MYB52(1)                                                                                         <xxxxxxxxxxx                                                                                        <xxxxxxxxxxxx                                                                                        <xxxxxxxxxxxx             --------->LBD16                                                            <xxxxxxxxxxxx             <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                         <xxxxxxxxxxxx           --------->DEAR3(2)                                                          --------->ANAC46         --------->ARR14(2)                                                          <---------ALFIN1         <---------ARR14(2)                                                       --------->AtMYB61        <---------SPL7                                                           <xxxxxxxxxxxxxxxxxxx       <xxxxxxxxxxxxxxxxsmallRNA(s)                                            <---------ALFIN1       --------->RAP2.6(2)                                                 <xxxxxxxxxxxxxxxxxsmallRNA(le3)    ------>MYB46(1)                                 <---------HSFB2a(1)  <---------ARR14(2)    ------>MYB83                                    <---------HSFC1(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    <xxxxxxxxxxxxxxxxsmallRNA(s)       <---------AHL20(2)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxsmallRNA(s)        --------->TOE2(3)       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxsmallRNA(s)        ----------->GT1  --------->HSFB2a(1)  --------->ARR14(2)         x xxxxxxxxxxxxsmallRNA(s)  --------->ANAC58  --------->YAB1 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    < xxxxxxxxxxxxx>smallRNA(si3)      <---------TOE2(3) --------->HSFC1(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxsmallRNA(s)       --------->ANAC58 <-------TEIL  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <xxxx   tgaaccaagccgaaccggcataaaccattcgcaaataatgttaaattcataagaaatttctcccaacttgtgtcgaatccaacacctccacctaagagat  16825200            --------->ZAT6         <---------WRKY38(1)         <---------WRKY12         <---------WRKY45        <<<<<<<<<<WRKY6        <<<<<<<<<<WRKY11       <-----------HVH21     <---------MYB46(3) --------->ATHB12    <------MYB46(1) xxxxxxxxxxxsmallRNA(fl3)                                                               ---------->DOF2 xxxxxxxxxxxsmallRNA(le3)       <---------AHL20(2)                          --------->ATHB12 xxxxxxxxxxxsmallRNA(se3)       <---------AHL20(1)                          -------->ATHB1 xxxxxxxxxxsmallRNA(se3)      <---------YAB1                                <---------ICU4 xxxxxxxxxxxsmallRNA(si3) <----------DOF2            <---------ARR11(3)     --------->YAB1 xxxsmallRNA(le3)    <---------MYB46(3)             <---------CCA1(2)      <---------YAB1 xxxxxxxxxxxxxxxxxxx>smallRNA(le3)      --------->MYB46(3)                 <---------ATHB12      <--- ---------YAB1       <------MYB83     <-----------GT1--------->ARR11(3)    --------->ICU4    <-------TEIL xxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------YAB1<-------TEIL              --------->YAB1<---------AHL20(2)   ttatcattgggtcaactctaagttggttctttattatttttaacaaacatacatatatctcttatcgattcagattaatcattggatattaaaagttcgt  16825300                                                                         <---------ATHB12                                                                         <<<<<<<<<ARR2                                                              <---------YAB1<---------YAB1                                                             --------->AHL20(1)                                                             <---------AHL20(2)                                            <-----------GT1  <---------AHL20(1)       <----------DOF2               --------->CCA1(2)       --------->AHL20(2)                  <---   <---------GLK1(1)              <---------YAB1            --------->AHL20(2)                  <----   --------->GLK1(1)            --------->YAB1      <-----------GT1    --------->WOX13(1)      ------ ------ANAC46           ------>ZmHOX2a(1)--------->ANAC46   --------->YAB1--------->YAB1  <----------DOF2   cgtggatttctttctctaatttcttcctatagagtcatgatacaagttactaaattactccattatatttgaacaatcaaaattgtgtcatgctttagat  16825400  Previous    Next  AGI:  At3g45775.1    Description:  transposable element gene. copia-like retrotransposon family, has a 9.5e-189 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays) Range:  from: 16820417    to: 16824856    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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