Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                --------->AHL20(2)                              --------->AHL20(1)                              <---------AHL20(1)                     <---------ICU4                     <---------AHL20(2)                     -------->HAHB4 --------->ATHB12   <---------YAB1 ---------YAB1      --------->ICU4                             --------->ICU4           --------->AHL20(2) ---------ATHB12  --------->YAB1                              <---------YAB1            --------->ATHB51 -------->ICU4    <---------ICU4                          ----------->GT1               <---------AHL20(2) --------TOE2(3) --------->AHL20(2)                     --------->ICU4      <---------TOE1(3) ----->AHL20(2)  <---------ATHB51                     <---------ICU4        <---------TOE2(3) ------AHL20(2)  <---------AHL20(2)<---------AHL20(2)<---------ATHB51      ---------->DOF2 -----YAB1       --------->ICU4   --------->AHL20(2) <---------AHL20(2)   <---------AHL20(2)   <----- ---ICU4       --------->YAB1 <---------AHL20(2)     --------->AHL20(2) --------->CCA1(2)   <-------- --YAB1    --------->TOE1(3) --------->AHL20(2)      --------->ICU4    --------->ARR11(3)   --------- ->ICU4    --------->TOE2(3) <---------AHL20(2)    --------->YAB1      <---------ARR11(3) <---------YAB1   taatgatttaaaaccataaataattattcaaataaattttatgttcaaaacaaaaataattagtaatattgaagatttaaagttagagaattattttttt  16743200                                                                                                -----                                                                                                -----                                                                                                -----                                                                                                <xxxx                                                                                                -----                                                                                                -----                                                                                               ------                                                                                              -------                                                                                              -------                                                                                              <------                                                                                              ------>NtERF2                                                                                              <------                                                                                           --------->At4g35610                                                                                          ------->GAMYB                                                                                          --------->ANAC46                                                                                         <-----------                                                                                    --------->ANAC58                                                                                    --------->ANAC58                                                                                    --------->ANAC46                                                                                    ------->GAMYB----                                                                                    --------->RAP2.6(2)                                          <---------YAB1                            <xxxxxxxxxxxxxxxxsmallRNA(i)                                     <---------AHL20(2)                    --------->AHL20(2) <------                                    --------->AHL20(2)                     <---------AHL20(2)<xxxxxxx                                    <---------AHL20(2)     <---------AHL20(2)      --------->MYB46(3)                                <---------AHL20(2)    <----------DOF2  ==============================      <---------TOE2(3)        --------->AHL20(1)   ---------->ID1     --------------->AGL15 --------    <---------AHL20(2)         <---------AHL20(1)  <-----------GT1     <----------DOF2   --------->MYB46(3) ----YAB1                    --------->AHL20(1)   <<<<<<<<<<GT-3b <----------DOF2 -------->P--------- -AHL20(2)                   <---------AHL20(1) <---------YAB1 <-----------GT1   <xxxxxxxxxxxxxxxxsmallRNA(i) >AHL20(2)                --------->AHL20(2) <---------YAB1--------->AHL20(2)    --------->MYB52(1)   atagaattaatgtgaatataaaacttgataatatatattttaatttgattatttttcttttttaatttcttttctttttaaatcaaccgcaaccgcagcc  16743300                                                                                      --------->At4g35610                                                                                     ------->GAMYB                                                                                    --------->MYB46(3)                                                                                   ------>MYB46(1)                                                                                   -------->P    <---------ANAC58                                                               ------>MYB83    <---------ANAC58                                                              --------->MYB52(1) ---->ANAC58                                                                      --------->MYB55(1) ---->RRTF1(2)                                                                   --------->AtMYB61 ---->RAP2.3(2)                                                                  <---------MYB111(1) xxxxxxxxxxxxsmallRNA(s)                                                         <---------MYB55(2) ---->ANAC58                                                                     <---------MYB46(2) ---->RAP2.6(2)                                                                  <---------MYB111(2) --->RAP2.3(1)                                                                   --------->MYB46(3) -->At4g35610                                                                   --------->DEAR3(2) -->ZAT2                                                                    <------MYB46(1) ---At4g35610                                            --------->ANAC46   <------MYB83 ---ZAT2--------->HSFB2a(2)                             --------->SPL1(2) <---------WOX13(1) -AtMYB77                --------->GLK1(1)              --------->SPL7 <---------YAB1xxxxxxxxxxxxxxxx ----->LBD16 --------->ANAC58                          --------->SPL1(1)--------->ATHB12 ---ATERF1(1)--------->ANAC58                         <---------SPL7<-----------------AGL3          - xxxxxxxxxsmallRNA(s)    <---------GLK1(1)            <---------ZAT14--------------->AGL15          - ====================================================================================MADS_MADS   ---- ->DEAR3(1)---------->DOF2    --------->ANAC58        --------->ZAT14<---------------AGL15 --------->MYB46(3) >ERF1  <---------HSFB2a(2)   --------->ANAC58     <------------------SPL14 xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   gcaaatgcttgtggaaaggaatttttgaaatccagcaatttcgaacagttcgaaactgtacggagcagtttctatgattggtaccaaccgctaacaacta  16743400                           <-------GAMYB             -------->P   --------->MYB111(2)            --------->MYB55(1)            ------->GAMYB --------->MYB55(2)           --------->MYB46(3)         <---------DOF5.7(2)   <---------At4g35610       --------->DOF5.7(2)--------->MYB111(1)  --------->ANAC58       <---------MYB52(1) <---------MYB46(3)   --------->ANAC46      <-------GAMYB      <--------P            --------->ANAC58   ------>MYB46(1)      <-------GAMYB        ---------->DOF2   ------>MYB83  <---------MYB52(1)         <---------ATHB12                            ------>MYB46(1) --------->DEAR3(1)    --------->MYB55(2)  ------>MYB46(1)                              ------>MYB83 ----------->HVH21     <---------MYB46(3)  ------>MYB83                               ------->GAMYB ------->GAMYB--------->MYB46(3)          --------->WOX13(1)                        --------->ANAC58 --------->MYB46(3) <------MYB46(1)    <xxxxxxxxxxxxxxxxsmallRNA(i)                 --------->ANAC46 xxxxxxx>smallRNA(fl3)--------->ALFIN1<-----------GT1               <-----------GT1 --------->ANAC58 -------->MYB46(3)  <------MYB83  --------->At4g35610 --------->MYB52(2)     --------->ANAC46 -------->DEAR3(2) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)         ---------->ID1    --------->MYB46(3) ----->MYB46(3)------->GAMYB   --------->At4g35610  <---------MYB52(1)--------->ZAT6-------->P   caaccgaccgttaacaaccgctaggtggttgttagcagataaaccaatcaagccattagttgttttgtcttaacaatacacaaaacaacccacttaatat  16743500                                                                 <----------DOF2                                                            ---------->DOF2                                                        --------->ANAC58                        -----                                                        --------->ANAC58                       <-----                                                        --------->ANAC46             ------>ZmHOX2a(1)                                                      ------>ZmHOX2a(1)              ================                                        <----------DOF2--------->SPL7          *TSS  ================                 <-------MYC3    <----------DOF2     --------->TOE2(2)     ---------->ID1     -------                 ------->MYC3---------->ID1          --------->TOE1(2) <----------DOF2        <------   ttgggcttaacatataacacatggcccatttgtctctttcttctttctaattcttcctacgacaaagctttctctttgtccctcttcctcttctacgatc  16743600           <-----------RAV1(1)         <----------DOF2         ===========================================bZIP_DOF                                    <---- ->ZmHOX2a(2)                                                                               --------- -ZmHOX2a(2)                                                                                <-------- =HOX2a_HOX2a                               <---------CCA1(2)       <------ZmHOX2a(1)   --------->YAB1 ==HOX2a_HOX2a                            --------->TGA1a      <-----------GT1          --------->AHL20(2) -->ARR11(3)                              --------->O2  ----------->GT1           <---------ARR11(3) ---ARR11(3)                        <---------ALFIN1   <---------YAB1  --------->AHL20(2)<---------AHL20(2)   tcttcttctctctttgttgcagtctcttctcatcttctccactctcgtctctcaagtatggttaattacaggattaatttccaacatctattatatatat  16743700                                                                                              <------                                                                                              -------                  <---------AHL20(2)                                                          <------                 <---------AHL20(2)                                                           <------                 <---------AHL20(1)                                        <---------AHL20(2) <------                 --------->AHL20(2)                                    <---------RVE1(1)  <---------HSFB2a(1)             <---------YAB1                                            <---------CCA1(1)  --------->HSFB2a(1)             --------->ICU4        <---------ANAC55(2)                --------->ARR11(3)  --------->HSFC1(2) -----AHL20(2)<---------ICU4  <---------RVE1(1)                       <---------ARR11(3)  <---------HSFC1(2) >AHL20(2) --------->YAB1    <---------ARR11(3)                   ---------->DOF2    --------->AtLEC2 -AHL20(2)<---------ATHB12   --------->ARR11(3)        <---------------------WRI1  <---------AtLEC2   aaactcgttgaaatcataatttttttcttcagatattaagtaaacaaattggccatcgacgagagactcaaaggtattttttcttccatggaaatttcgt  16743800                                                                                          <------MYB83       <---------HSFB2a(2)                                                                <------MYB46(1)       --------->HSFB2a(2)                                                           --------->ANAC58      ------>ZmHOX2a(2)                                                            --------->MYB52(1)    <---------AGP1                                                                <---------ZAT14    --------->ARR11(3)                                                            <---------WRKY38(1) ---ANAC46                                                                <---------AHL20(2) ---->GT1                                                                 --------->AHL20(2)--------- ---ANAC58                 <---------AHL20(2)                         --------->AHL20(2) <---------AtMYB61 ---ANAC55(2)             --------->AHL20(1)                          --------->ICU4 --------->ANAC58 ---ANAC58                <---------AHL20(1) --------->ATHB12  <---------ANAC46   --------->ZAT14  --   gaaattgatctggaaacttgtttggatatatattttcgaaggaagtttgatttgaattgtagtttgagtgaaatatttatatagtgaacggaaggtgttc  16743900                                                                                             --------                                                                                            ---------                                                                                           <---------WOX13(1)                                                                                      <----------DOF2          ---------->DOF2                                                        <---------MYB52(1) >ALFIN1----------->HVH21    <---------YAB1                                     <----------DOF2 ------->ANAC46    <---------MYB52(1) ------->TEIL    --------------->AtSPL8   <---------DAG2--------   gacgaaatgcctgaaagagctgttttgttgtatgattctgtatgtttgtgttgagcatagtacaatctagttttatggtcacctttagctttgaatgatg  16744000                         <---------ZAT14                         --------->ZAT14                                      ---------->DOF2--------                         --------->REM1(2)                            --------->At4g35610   <--------                    <---------YAB1                     --------->ALFIN1<----------CDC5      ---------                 <---------YAB1                  <------NtERF2        <---------At4g35610--------->HSFB2a(2) ->YAB1          --------->ICU4                 ------>NtERF2        --------->ALFIN1    <---------HSFB2a(2) >ICU4 ----------->GT1<---------ANAC46      --------->ANAC46      --------->DAG2      ------->PIF5 ->ATHB12 --------->ATHB12                <---------AtLEC2      ---------->DOF2       <-------PIF5   agttctaaatagtgatttgatgatgagtgtagagagacccatctccatggcaccaaggtggaaatggaaaggtgctgaggcaaaggcacttgcagaacct  16744100  Previous    Next  AGI:  At3g45590.1    Description:  ATSEN1 (SPLICING ENDONUCLEASE 1); tRNA-intron endonuclease. Identical to tRNA-splicing endonuclease subunit Sen2-1 (SEN1) [Arabidopsis Thaliana] (GB:Q9M1E8;GB:Q9S7L3); similar to SEN2 (SPLICING ENDONUCLEASE 2), tRNA-intron endonuclease [Arabidopsis thaliana] (TAIR:AT5G60230.2); similar to SEN2 (SPLICING ENDONUCLEASE 2), tRNA-intron endonuclease [Arabidopsis thaliana] (TAIR:AT5G60230.1); similar to unknown [Populus trichocarpa] (GB:ABK93461.1); contains InterPro domain tRNA-intron endonuclease; (InterPro:IPR006676); contains InterPro domain tRNA intron endonuclease, catalytic C-terminal; (InterPro:IPR006677); contains InterPro domain Endonucl Range:  from: 16743579    to: 16744839    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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