Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                         >>>>>>>>>>WRKY26                             ------>ZmHOX2a(2)                    <-------GAMYB                                 <---------ARR11(3)                    <---------At4g35610              <---------At4g35610               <----------DOF2                       --------->At4g35610 --------->At4g35610            --------->GLK1(2)                       ----------->RAV1(1)  <---------At4g35610            <---------ARR11(3)                    --------->At4g35610    ----------->RAV1(2)            <---------ARR14(2)             ================================HOX2a_HOX2a            --------->ARR11(3)             <------ZmHOX2a(1)      --------->ARR11(3)   <-------MYC3 -->LBD16   --------->ARR14(2)       <---------HSFB2a(2)      <---------ANAC58         ------->MYC3-- -->RAV1(2)<---------ARR14(1)        --------->HSFB2a(2)      <---------ANAC58    <-----------GT1  <-   gctatacttaagagtatctttcagttgatcaaactgcttcggtaaggacatgagcagcagaatagcttgatcttcatctgagattaacacgtttgtgttt  15737200                 <------NtERF2                ----------->GT1                --------->LBD16               <---------DEAR3(1)              <---------LBD16        <----------DOF2      --------->At4g35610      <---------At4g35610   <------ZmHOX2a(2)                  --------->TOE2(3)  <---------ARR11(3)            --------->ATHB12  --------->ARR14(2)            <---------ICU4     --------->ARR11(3)  <---------ARR14(2)          <---------TOE2(3)    <---------ARR11(3)          <----------DOF2 ------->HSFB2a(2)         <---------YAB1----------->RAV1(1)             <---------ZAT14 --------HSFB2a(2)----------->ARR10  ----------------->AGL1 ------->TEIL --------->ZAT14   tccagatcagctattaggcggagaaactcattaatgtttgcctcaacagataagttctcttgcatcttgaaactgtatagtctttgtttcagataaatgc  15737300                                                                              ------>ZmHOX2a(1)                                                                             --------->TOE1(3)                                                                             --------->TOE2(3)                                                                         ------>ZmHOX2a(2)                                                                       <---------ARR11(3)                                                                   <---------ANAC58                                         ----------->RAV1(1)       <---------ANAC58                     --------->ZAT14   --------->MYB46(3)       <----------DOF2          --------->TOE2(3)     ---------->DOF2   --------->At4g35610  --------->ARR11(3)   agtttggaagagccttagacatgtacagtctgtctaaagcatccaacatagaagctacagtcttctctttcttgatcttccttagcacttggtctgaaac  15737400                                                         <---------TOE1(2)                             <----------DOF2       <----------DOF2                            <---------DAG2     <---------ANAC58                     <----------DOF2           <---------ANAC58            <---------At4g35610           <---------ICU4 <---------TOE2(2)     <---------YAB1 <---------ANAC58      --------->ATHB51 <---------GLK1(2)           ------->TEIL   --------->ZAT6   <---------ANAC58 ------>ZmHOX2a(1)  <-----------RAV1(2)       <----------DOF2   gcttaatactattgtgctccttgctttctgccttttctcctccattatggcttctttctcaggttctcttccttcttctaacgtctttgaatctgagacc  15737500                                     <-------TEIL                                   <---------ARR14(2)                                   --------->AGP1                              --------->MYB52(1)                              ----------->RAV1(1)                      --------->ZAT14                      <---------MYB52(1)         <---------MYB52(1) <---------ANAC46                   <---------YAB1  --------->ARR14(2)          <---------ALFIN1                   <---------TOE2(3)===============================HOX2a_HOX2a      --------->SPL7                   <---------TOE1(3)<------ZmHOX2a(2)<---------GLK1(2) --------->REM1(2)        <----------DOF2 --------->MYB59  <-----------HVH21  ------>ZmHOX2a(1)   ------>ZmHOX2a(1)   atatgtgattctttgagagctatggttaggcccaacagatccatgtgagccattagcttctccttccacatcgtgtagtctcctcgttcgtcaaacttct  15737600                            <----------DOF2                         *TSS                        <---------ANAC58                        <---------ANAC58                   <---------bZIP60(2)                                --------->TOE1(3)                <---------TGA2(1)                                     --------->TOE1(2)                --------->bZIP60(1)                                  --------->HSFB2a(1)                <---------bZIP60(1)                                  <---------HSFB2a(1)                --------->ETT(2)                         --------->AtMYB61                         <-                <---------ETT(2)                        ------------>CBF            =================              <---------TGA2(2)                      --------->MYB46(3)   XXXXXXXXXXXXXXXXXXXXX>MIR845B             ----------->HVH21               <---------ZAT14         --------->HSFC1(2)       -------             ----------->TGA1                --------->ZAT14         <---------HSFC1(2)<----------DOF2           --------->ZAT2<----------DOF2    <----------DOF2         ------->TEIL    --------------->AGL15           --------->At4g35610           <------ZmHOX2a(1)     ---------->DOF2     ----------------->AGL1   ccatttcaacccttgctgacgacatggcttctttgttttgtaaggactttactgaaccaccaatacaaagaaccttcgctctgataccactttgtgaaaa  15737700   --------->ANAC46                     ------>MYB46(1)            --------->TOE2(3)   --------->ANAC58                     ------>MYB83  ----------------->AGL2   --------->ANAC58                  --------->MYB46(3)           <---------HSFB2a(1)               - ----------GT1                  --------->HSFB2a(2)   ----------------->AGL3--------->YAB1          - =======================================================================MADS_MADS                   - -->ICU4<---------MYB52(2)   <----------DOF2    <----------DOF2 <---------GLK1(2)            --------   ttaacacaccacaaaccaagaacgtttagcactttgagaaccaacttcgactttgaaccaaaaacagaacctttgtaatgagaaatgcagaacagaacac  15737800                                                         --------->ANAC58                                                         --------->LBD16                                                <---------GLK1(1)                                             <------NtERF2     --------->ZAT18                                            <------NtERF2--------->ANAC46                                            --------->LBD16  <---------ARR14(2)                          <---------ATHB12 <---------ANAC46  --------->ARR14(2)                 <---------ZAT18           <---------LBD16--------->LBD16      --------->YAB1--------->ANAC46      <---------LBD16--------->HSFB2a(2)                        < -------->ANAC58 --------->ZAT14    ----------->RAV1(2)  <---------HSFB2a(2)                        < -------->ANAC58 <---------ZAT14  --------->TGA1a        --------->ANAC58    <----------DOF2     ---- -------->ANAC46<-----------HVH21 --------->O2  --------->GLK1(1)          --------------->AGL15 <--- ->ZAT14      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     <---------LBD16 <-----------GT1   ---------->DOF2   acacacaatggtaacccagttcacaccaatggtgctacgtctgggccgggaactctctcccggaatccactatataaccctttagagatttacaaagaga  15737900            <---------At4g35610                                                    <-----------GT1        <-----------HVH21                                              --------->MYB46(3)  <-----------GT1                           <----------DOF2           --------->ANAC58 ---------ANAC58                     <-----------GT1                  --------->ANAC46         <----- ---------ANAC58                <---------TOE2(3)                     --------->ANAC58         <----- ----->GLK1(1)             --------->MYB52(1)                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ------GLK1(1)       ---------->DOF2<-------TEIL             --------->LBD16      --------->ZAT14   tttcttaccctctcagccccttacaaagctaactaagattcactctctttcactcactgtttccccaagaacacccaatacaagtttactctctattaag  15738000                                                                                            ---------                                                                                          <---------ARR14(2)                                                                                          <----------                                                                                   ------>ZmHOX2a(1)                                                                                 --------->HSFC1(2)                                                                                 ====================                                                                                 ====================                                                                                 <---------HSFC1(2)                                                                                 <---------HSFB2a(1)                                                                                 --------->HSFB2a(1)                                                                                 ------>ZmHOX2a(2)                                                                                =====================                                                                                <------ZmHOX2a(2)                                                                               --------->ARR14(2)                                                                               <---------ARR11(3)                                                                               <---------ARR14(2)                                                                            <---------HSFB2a(2)                                                                         ==============HOX2a_HOX2a                                      <---------At4g35610                ------>ZmHOX2a(1)--------->ARR14(2) ----ANAC58                           --------->At4g35610    <-----------GT1--------->HSFB2a(2)   --- ----ANAC58  <-----------GT1          <---------ZAT2  <---------TOE2(3)  ===============HOX2a_HOX2a--   tgcctctatgtttcttaacctttctctctctacaatgctcagcttatatagacttagaggttttaacttagtctccttctggatccttctcggttcttct  15738100  Previous    Next  AGI:  At3g43867.1    Description:  transposable element gene. copia-like retrotransposon family, has a 8.2e-284 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana) Range:  from: 15732985    to: 15737625    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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