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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
ZAT6
----------->
RAV1(1)
--------->
YAB1
------->
GAMYB
-------->
HAHB4
-------->
P
<---------
YAB1
--------->
ANAC58
--------->
TOE2(3)
<---------
ICU4
--------->
ANAC58
--------->
TOE1(3)
--------->
YAB1
--------->
ANAC46
--------->
REM1(1)
<---------
YAB1
<---------
YAB1
----
YAB1
<---------
YAB1
------>
ZmHOX2a(1)
--------->
ICU4
<---------
YAB1
-->
KAN4(2)
--------->
MYB46(3)
<---------
GLK1(2)
--------->
YAB1
--------->
YAB1
cttggtcttgttatcaaacaacccacatagctcaagaatttcctacaaccttacaattcaaaatcagataataataatactatgcaatcttcattataca
15686700
<------
ZmHOX2a(1)
--------->
ANAC55(2)
<---------
TOE2(3)
<XXXXXXXXXXXXXXXXXXXXX
MIR864-3P
--------->
ANAC58
--------->
ATHB12
--------->
At5g28300
--------->
ANAC58
--------->
ATHB51
--------->
O2
----------->
GT1
--------->
ANAC58
--------->
ICU4
--------->
TGA1a
--------->
YAB1
--------->
ANAC58
<---------
YAB1
=============
<---------
YAB1
---------->
DOF2
<---------
TOE1(3)
------>
ZmHOX2a(1)
tctaaaattttcataacaaggggtaaaacataaaactaaaagcactcacgttaaggaattgttgacattattgagtcaaataatcctccaacgtctcttc
15686800
--------->
AHL20(2)
<--------
HAHB4
<---------
ICU4
-------->
ATHB1
--------->
ATHB51
--------->
ICU4
---------->
DOF2
--------->
LBD16
--------->
ANAC58
--------->
ANAC46
<---------
YAB1
--------->
ANAC58
<---------
AHL20(2)
--------->
AHL20(2)
------>
NtERF2
<---------
ATHB51
<---------
YAB1
-------
--------->
DEAR3(1)
<---------
YAB1
<---------
AHL20(2)
<---------
ALFIN1
--------->
YAB1
--------->
DAG2
--------->
AHL20(2)
xxx
--------->
ANAC46
<---------
YAB1
---------->
DOF2
--------->
AHL20(2)
XXXXX
==================================
bZIP_DOF
<-----------
GT1
----------->
GT1
<---------
AHL20(2)
gttctcttccaattcatcgccacccgtaaagacaattattatatagttagtgatttactaatccaaaagttgttaaaaattaaaatagaatataaatgaa
15686900
<---------
AHL20(2)
<---------
ICU4
-------->
HAHB4
<---------
ICU4
--------->
ATHB51
<--------
HAHB4
-------->
HAHB4
<--------
ATHB1
--------->
YAB1
--------->
AHL20(2)
--------->
ICU4
<---------
ATHB51
--------->
AHL20(2)
<---------
YAB1
<-----
--------->
AHL20(2)
--------->
YAB1
<------
--------->
AHL20(2)
--------->
TOE2(3)
<------
<------
ZmHOX2a(1)
--------->
KAN4(2)
<------
----------->
GT1
<---------
HSFB2a(1)
--------->
ICU4
-------
----------->
GT1
<---------
HSFB2a(2)
--------->
ICU4
<---------
AHL20(2)
--------
-->
YAB1
---------->
DOF2
--------->
DAG2
--------->
HSFB2a(1)
----------->
GT1
--------
xxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
--------->
HSFB2a(2)
<---------
YAB1
--------->
AHL20(2)
<-------
XXXXXXXXXXXXXXX>
MIR161.1
---------->
DOF2
<------
ZmHOX2a(1)
---------->
DOF2
<---------
YAB1
aatgactacatgaaaggataaaataaaaaaaaaggtagttttggaaggacattcttaataattattcaaagtaaaaattaaaaatacgataatgtgtcgt
15687000
--------->
YAB1
<---------
ICU4
--------->
YAB1
<---------
ICU4
--------->
YAB1
--------->
ICU4
<---------
YAB1
----------->
GT1
<---------
ICU4
----
SPL7
---------->
DOF2
--------->
YAB1
---
ANAC58
--------->
AHL20(2)
--------->
YAB1
--------->
YAB1
---
ANAC58
<---------
AHL20(2)
--------->
YAB1
--------->
AHL20(2)
<---------
AHL20(2)
---
ANAC46
--------->
AHL20(2)
--------->
ZAT18
----------->
GT1
--------->
At5g28300
--------->
TOE2(3)
---->
GT1
<---------
AHL20(2)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
----------->
GT1
--------->
ICU4
------->
AtSPL3
<---------
AHL20(2)
----------->
GT1
--------->
DAG2
<---------
YAB1
-----
------->
AtSPL8
<---------
AHL20(2)
---------->
DOF2
<---------
YAB1
----------->
GT1
<---------
YAB1
--------
AtSPL8
--------->
AHL20(2)
--------->
AHL20(2)
---------->
DOF2
--------->
ICU4
<----
acaaaatagaaatttttttttaattaaaagtgcaaaaataaaagagagaaaaaatatgaaaacaaaaagagggtaaataataataataataatcttattt
15687100
<------
-------
<------
---------
<----------
<-----------
TBP
--------->
AHL20(2)
<---------
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
------------>
CBF
--------->
AHL20(2)
------>
MYB46(1)
<-----------
TBP
------>
MYB83
<---------
MYB59
<---------
AHL20(2)
--------->
MYB52(1)
--------->
ANAC58
<---------
AHL20(2)
<---------
MYB111(1)
--------->
ANAC55(2)
<--------
<---------------
AtSPL3
--------->
ANAC58
<-----------
TBP
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
--------->
ANAC55(1)
<--------
<---------
TOE2(3)
*
TSS
<---------
ANAC55(2)
<--------
--------->
YAB1
<---------
MYB111(2)
--------->
ANAC46
--------->
AHL20(2)
<--------
HAHB4
<---------
MYB46(2)
<------------
CBF
<---------
AHL20(2)
<---------
YAB1
--------------->
AtSPL8
<---------
AtLEC2
<-----------
TBP
---->
AHL20(2)
<-----------
GT1
<---------
MYB59
<---------
ICU4
------->
TEIL
<-----------
TBP
-----
AHL20(2)
<---------
YAB1
------->
TEIL
--------->
ICU4
<---------------
AtSPL3
--------->
AHL20(2)
tattctatatttctattattaacgagacaatgtac
ctaactacaatgtctaactaatttttacatggacattgtacgtaactatatatatatatatatat
15687200
---
AHL20(2)
-->
AHL20(2)
<---------
ANAC58
-----
TBP
------->
GAMYB
>
AHL20(2)
<---------
ANAC58
--------->
GLK1(2)
----
-
TBP
--------->
MYB52(1)
<------------
CBF
------>
ZmHOX2a(1)
-
AHL20(2)
<------------
CBF
--------->
YAB1
<------
ZmHOX2a(1)
<---------
ZAT18
<-----
-------
AGL15
<---------
ANAC46
----------->
GT1
<---------
ARR14(2)
<---------
ZAT14
<-----
---
TBP
--------->
At4g35610
----------->
TGA1
--------->
ARR14(2)
----------->
HVH21
<--------
atagaaaacaactgaattgcgagaaaacattgtgacgaaaataatctttcgcaaatttgctaggaatttgctatgaccgtagtgtccttcgcaaaatcct
15687300
------->
TEIL
--------->
ANAC58
<---------
ANAC58
--------->
ANAC55(1)
<---------
ANAC58
<<<<<<<<<<
AtMYC2
<---------
ANAC46
--------->
ANAC58
----->
AtLEC2
--------->
ANAC55(2)
<-
----
ANAC58
<---------
ANAC55(2)
<----------
DOF2
------
----
ANAC58
----------->
GT1
<---------
ANAC58
<---------
TOE2(3)
-
ARR11(3)
<---------
ALFIN1
<---------
ANAC58
<---------
AHL20(2)
tgcaatttgcgagtacttagcgacacgtatatttctctagcaaaatttgcgatggctttactacttgctgatgaattagatgggcatgtttttaatgaat
15687400
--------->
ANAC58
--------->
ANAC58
------>
ZmHOX2a(2)
--------->
YAB1
<---------
ARR11(3)
<-------
TEIL
--------->
AHL20(1)
<---------
ARR14(2)
----------
GT1
<---------
GLK1(1)
--------->
ARR11(3)
--------->
ARR14(2)
->
TEIL
--------->
ATHB12
--------->
AHL20(2)
<---------
TOE2(3)
ataacaacttatttgataagtgagaattcattgtaaatccctagcaaaatatatgatctcgagcaagtctaaggcaaatattcatagcacttccctagca
15687500
--------->
AHL20(2)
<---------
ANAC46
--------->
AHL20(2)
<---------
AHL20(2)
--------->
ARR11(3)
--------->
ATHB12
--------->
TOE1(2)
--------->
GLK1(2)
--------->
ATHB51
--------->
TOE2(2)
<---------
ARR11(3)
<---------
AHL20(2)
--------->
ANAC58
--------->
AHL20(2)
<---------
AHL20(1)
--------->
ANAC58
--------->
ANAC46
--
--------->
AHL20(2)
--------->
ANAC46
--------->
YAB1
<-------
TEIL
--------->
RVE1(1)
------
aaaacaaattatttgcctataaatatcaaacgtaagaaaaccatacatcataactcaaacatacacaaaaaaaaaatctacttacaaaaaaaaacagttt
15687600
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AGI:
At3g43826.1
Description:
pseudogene, hypothetical protein
Range:
from: 15686380
to: 15687135
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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