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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
LBD16
<------
ZmHOX2a(2)
<---------
WOX13(1)
--------->
ARR14(2)
<
--------->
ATHB12
--------->
ALFIN1
<---------
ARR14(2)
-
-------->
ARR11(3)
<---------
YAB1
=============================
HOX2a_HOX2a
---------
ARR11(3)
<-------
TEIL
<---------
YAB1
<------
ZmHOX2a(1)
<-
--------
GT1
<---------
MYB46(3)
--------->
MYB46(3)
<---------
RVE1(1)
----------->
GT1
--
-->
YAB1
<-----------
GT1
<---------
AtLEC2
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
---------->
DOF2
--
-
AHL20(2)
<-----------
RAV1(1)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
aacatcttgatttactcgagattgttgcattgattcattcaaccaatttgattataggtgtgtgatattttgaaggatccgaaaaacagaaaatagatca
15612500
------->
TEIL
<---------------
AtSPL3
--------------->
AtSPL8
<---------------
AtSPL8
<---------
LBD16
--------->
AHL20(2)
--------->
MYB52(1)
------>
ZmHOX2a(1)
--------->
AHL20(2)
<---------------
AGL15
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
--------------->
AGL15
---------
ARR14(2)
--------->
TOE2(3)
-------->
ARR14(2)
--------->
TOE1(3)
<----------
DOF2
--------
GLK1(1)
--------->
AHL20(2)
--------->
AHL20(2)
--------->
At4g35610
------->
RVE1(1)
--------->
YAB1
<---------
AHL20(2)
<---------
At4g35610
------->
GLK1(1)
--------->
LBD16
--------->
AHL20(2)
--------->
CCA1(2)
<---
aatatccgaattaaaaaccgggtcaataaaaaaaacaatccgattaaattccttaaaatgtacttaaaaattgttaagtagatagaagggagctttcaat
15612600
<-----------
GT1
<---------
AHL20(2)
--------->
ANAC58
<---------
AHL20(2)
<---------
TOE2(3)
<---------
ANAC55(2)
--------->
AHL20(2)
<---------
YAB1
--------->
ANAC58
--------->
AHL20(2)
<----------
DOF2
--------->
ANAC55(2)
<---------
AHL20(2)
<------
<---------
DAG2
--------->
ANAC46
--------->
AtMYB61
--------->
AHL20(2)
<-----
------
ARR11(3)
--------->
ANAC46
----------->
GT1
----------->
RAV1(1)
-------
ttcttctatccactttaacattgttcttctacacaaatgtctactcaagaacgtaacaaaaaccacaacaaaaaattaaataaacattttcatcaagatc
15612700
------------>
CBF
<---------
ATHB12
------>
MYB46(1)
------>
MYB83
------->
GAMYB
--------->
AtMYB61
<---------
MYB59
--------->
LBD16
--------->
ANAC58
------
<---------
LBD16
<---------
YAB1
--------->
MYB46(3)
------>
ZmHOX2a(1)
--------->
MYB52(1)
<---------
LBD16
--------->
ANAC58
--------->
TOE1(3)
---
ARR11(3)
--------->
TOE1(3)
--------->
ANAC46
--------->
TOE2(3)
-
-
ZmHOX2a(2)
--------->
TOE2(3)
--------->
ANAC58
<------------
CBF
-------
-->
ARR11(3)
<---------
ZAT6
--------->
LBD16
--------->
ANAC58
--------->
ATHB12
------------
atcaacacaaaccggattagagataaccttaaccgggtttattttagactcgcaaccaaacaatctctctacttattggggttttccttaagacaatgac
15612800
--------->
GLK1(2)
------------>
CBF
--------->
LBD16
--------->
TOE2(3)
--------------->
AGL15
--------->
YAB1
*
TSS
----------------->
AGL1
<---------
ICU4
--------------------->
WRI1
--------->
GLK1(1)
<---------
YAB1
<---------
ARR14(2)
<---------------
AGL15
<-----------
GT1
<---------
ICU4
--------->
ARR14(2)
----------------->
AGL2
------>
CBF
--------->
YAB1
<------------------------
ANAC81
<---------
GLK1(1)
-------->
YAB1
<---------
ATHB12
<---------
MYB52(1)
<-----------------
AG
-->
YAB1
--------->
WOX13(1)
<---------
CCA1(2)
<---------
GLK1(1)
<---------
ARR14(2)
>
CBF
------------>
CBF
<-----------
GT1
<----------
DOF2
<-----------------
AGL1
<---------
GLK1(1)
aattataccctcttcatcaatcatcatcaattttcgtcttcccgtttcttcttt
gtttgaatttcccccaaattgggaatccaaaaccctagaaatctcc
15612900
--------->
ANAC58
--------->
ANAC58
---------->
DOF2
<------
ZmHOX2a(2)
--------->
ARR14(2)
<---------
ARR14(2)
<---------
ARR14(1)
--------->
At4g35610
------>
MYB83
-
---------->
DOF2
<---------
At4g35610
<---------
MYB59
--
----------->
RAV1(2)
--------->
MYB52(1)
<---------
HSFB2a(2)
--
--------->
At4g35610
--------->
MYB46(3)
--------->
HSFB2a(2)
--
<---------
At4g35610
--------->
ARR14(2)
<---------
ALFIN1
------>
MYB46(1)
--------->
GLK1(1)
<-----------
HVH21
<---------
ARR14(2)
----------->
RAV1(1)
--------
atgagagaattcttctccatctgaatccaa
atgtcaaagctaatgaccagaaccagcggatcatcaagccccaacacgattccagaccaaatcgaatcac
15613000
--------->
ANAC58
<----------
ID1
--------->
ANAC58
--------->
DEAR3(1)
<-----------
RAV1(2)
<---------
ANAC46
<---------
ANAC58
----------->
HVH21
<---------
ANAC58
---------->
DOF2
--------->
ARR14(2)
--------->
ZAT18
--------->
MYB52(1)
<---------
ARR11(3)
------>
ZmHOX2a(2)
<---------
At4g35610
--------->
DOF2
----------->
TGA1
<------
ZmHOX2a(2)
<-------
TEIL
---->
MYB46(1)
<-----------
HVH21
<---------
ARR14(2)
--------->
CCA1(2)
------>
P
<---------
ARR14(2)
<-----------
ARR10
<---------
ARR14(2)
<---------
ANAC46
---->
MYB83
------>
ZmHOX2a(2)
--------->
ARR14(2)
--------->
ARR14(2)
<---------
REM1(1)
->
MYB46(3)
<------
ZmHOX2a(2)
--------->
MYB52(1)
--------->
CCA1(2)
--------->
At4g35610
----------->
GT1
caacaagctcaagatcggtgacgcagacgacaaacggatcgcaccaattcgtgatacaaggatacagtttagctaaaggaattggtgtagggaaacacat
15613100
--------->
RAP2.6(3)
--------->
MYB52(1)
----------->
HVH21
<---------
ANAC58
----------->
TGA1
<---------
ANAC58
----------->
RAV1(2)
<---------
ANAC55(2)
<---------
LBD16
<---------
ARR14(2)
<---------
ANAC55(1)
<---------
ICU4
<---------
ARR11(3)
----------------------->
TaNAC69(2)
--------->
ICU4
<---------
YAB1
-------->
P
--------->
LBD16
--------->
ANAC55(2)
<---------
YAB1
<------
ZmHOX2a(1)
--------->
ARR14(2)
--------->
At5g28300
<-----------
GT1
----------->
GT1
--------->
LBD16
--------->
ARR11(3)
----------->
GT1
<------
ZmHOX2a(1)
agcaagtgataatttctccgtaggaggttatcaatggactatcttcgtctaccctgacggtaaaaatccagaggataactcttcttacgtctctgtgttc
15613200
----------->
GT1
<---------
TOE1(3)
<---------
TOE2(3)
--------->
YAB1
<---------
DAG2
--------->
ANAC58
--------->
ZAT18
--------->
DAG2
<---------
ZAT14
<----------
DOF2
---------->
DOF2
<-------
TEIL
<---------------
AtSPL3
<---------
At4g35610
XXXXXXXXXXXXXXXXXXXX>
MIR3440B-3P
<----
<---------
ANAC58
<---------
ZAT18
<---------------
AGL15
--------->
DAG2
<------
<---------
ANAC58
---------->
DOF2
<----------
DOF2
---------->
DOF2
--------->
ANAC58
-------
atcgttttggctagtgaatgtactgaagttagagcgctttttgagctttctcttgttgatcaaagtggtaaagggaagcataaggttcatagccatttta
15613300
<---------
AtMYB61
<---------
AHL20(2)
--------->
ANAC55(2)
<---------
ARR14(2)
<---------
ZAT18
<---------
ANAC58
<---------
ARR11(3)
--------->
DOF5.7(2)
<-------
TEIL
<---------
ANAC58
--------->
ARR11(3)
-------
GT1
------>
ZmHOX2a(1)
<------
ZmHOX2a(1)
---------->
DOF2
<---------
YAB1
---
AHL20(2)
<---------
MYB46(3)
--------->
ZAT14
<---------
ANAC46
--------->
ARR14(2)
-->
AHL20(2)
<---------
AtMYB61
<---------
ZAT14
<---------
SPL7
<----------
DOF2
<---------
ANAC46
<
atcgttcacttgatggtggtccttatacgcttaagtacagaggaagtatgtg
gtatggcttgaaagtcttttcagtatcttcaatggcatatattattgt
15613400
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AGI:
At3g43700.1
Description:
ATBPM6 (BTB-POZ AND MATH DOMAIN 6); protein binding. similar to ATBPM5 (BTB-POZ AND MATH DOMAIN 5), protein binding [Arabidopsis thaliana] (TAIR:AT5G21010.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67414.1); contains InterPro domain MATH (InterPro:IPR002083); contains InterPro domain TRAF-like (InterPro:IPR008974); contains InterPro domain BTB/POZ fold; (InterPro:IPR011333); contains InterPro domain Kelch related (InterPro:IPR013089); contains InterPro domain BTB/POZ-like; (InterPro:IPR000210); contains InterPro domain TRAF-type (InterPro:IPR013322); contains InterPro domain BTB/POZ; (InterPro:IPR013069)
Range:
from: 15612855
to: 15614875
Orientation: Forward
Links:
TAIR
MIPS
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publications
when using AthaMap.
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