Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           <---------YAB1        ------------------------>ANAC81       --------->CCA1(2)       <---------GLK1(1)                                            <-----------HVH21      --------->ARR14(2)                                  --------->TOE2(3)      <---------ARR14(2)          <---------YAB1          --------->TOE1(3)    <------MYB83     -----     <------ZmHOX2a(1)   ---------->DOF2               --------->GLK1(1)       ----------->GT1 ------ ---->TOE1(2)  ---------->DOF2  --------->YAB1---------->DOF2 -------->P       <------MYB46(1) <-----   caagagaggatatgagtaaaagagaagaaaagaatcaaaattgggaagaaaagagagaaaccctaaccagggtcacattgttggtaaaactcttgaacat  14890400                                                                                       <---------ARR11(3)                                                                               ------>ZmHOX2a(2)                                                                              --------->CCA1(2)                                                                              <------ZmHOX2a(2)       --------->ANAC58                                                      --------->ARR14(2)       --------->ANAC58                                                      <---------ARR11(3)       ----------->GT1                                                       --------->ARR11(3)      --------->DAG2                                                         <---------ARR14(2)     ---------->DOF2                                                     ---------->DOF2  --------->ANAC58           <------ZmHOX2a(1)               --------->YAB1----------->ARR10        <  --------->ANAC58           =======================HOX2a_HOX2a      --------->At4g35610 ----------->GT1 ---->At4g35610            --------->MYB59                  <---------ATHB12 <---------AGP1      <--- --->ARR11(3)          --------->WOX13(1)                 --------->WOX13(1) --------->AGP1     ----- ----ARR11(3)        <---------ATHB12        ------>ZmHOX2a(2)    ---------->DOF2      --------->ARR11(3)   ctgcaagaaaagcaaaaactcaaatcaattaggaaattgaacatagatcggagaagataacaatcactagaagcagaaagatctgagaagatagtgaaat  14890500                                                                                                  ---                                                                                          --------->ARR14(2)       <---------MYB46(3)                                                                 <---------ARR14(2)      <---------AtMYB61                                                                  --------->ZAT2      <---------DEAR3(1)                                                                 <---------ZAT2      --------->ALFIN1                  <----------DOF2                                  <---------At4g35610     <---------MYB52(1)             ------>NtERF2                                        --------->At4g35610  <---------LBD16               <---------TOE2(1)                          <------ZmHOX2a(1)      --- <---------At5g28300         <---------SPL7  --------->GLK1(1)          --------->HSFB2a(2)     ----- -----------GT1            --------------->AtSPL3--------->TOE2(3)      <---------HSFB2a(2)  <------- ------ICU4       ----------->HVH21--------->DEAR3(1)                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ---->ICU4      <----------DOF2--------->SPL7<---------GLK1(1) ----------->HVH21      <---------At4g35610   ttttaccggtggtgagagctttgacaatggcagtacgacgacctttgaaatccttgaaaacttcttcgacagttcgaggattgtagagagcagctccacc  14890600                                                                                                  <--                                                                                                  ---                                                                                                  ---                                                                                                  ---                                                                                                  ---                                                                                                 ----                                                                                                -----                                                                                               <-----                                                                                               ------                                                                                               <-----                                                                                              <------NtERF2      ------>ZmHOX2a(2)                                                    <----------ID1    ------>NtERF2    --------->ARR11(3)                       --------->GLK1(2)    <--------ATHB1           <---------ABI4(2)    <---------ARR11(3)                       <---------ARR14(2)   --------->ATHB12      --------->ZAT2 --->MYB83                                  <---------GLK1(2)     --------->ATHB51      --------->At4g35610 --->MYB46(1)                      --------->ANAC58               <---------ICU4      --------->DAG2 ---->AtMYB61                      --------->ANAC58              <---------YAB1      ---------->DOF2 --ALFIN1                     --------->ANAC46                   --------->ICU4      ================   ttccatgatctctcgcttcgctcgctcgatctaagaaacgcagagagaatctctcagagggaatagaataattgaagaagacgaagaaaaagctgcgccg  14890700       --------->bZIP60(1)       <---------bZIP60(1)       --------->O2       <---------bZIP60(2)       --------->TGA1a       <---------TGA1a     --------->REM1(2)    ----------->TGA1    ----------->HVH21                                                *TSS -------ETT(2)                                                     <---------ANAC58 -------->HVH21                                         ---------->DOF2 ------>ETT(2)                                         <---------WRKY38(1)                       ---- ------>WRKY12    ------>ZmHOX2a(2)                    <---------WRKY12                          ---- ------>WRKY38(1)<------ZmHOX2a(2)                     <---------WRKY45                          <--- ----->ALFIN1   <---------ARR14(2)                    <<<<<<<<<<WRKY18                          ----- ---->LBD16     --------->ARR11(3)                    --------->WRKY18(1)                   --------- ----O2<---------O2                                   <<<<<<<<<<WRKY40                <---------DEAR3(2) --->DEAR3(1)   <---------ARR11(3)                    <<<<<<<<<<WRKY62                <---------MYB46(3) ----ANAC46     --------->ARR14(2)              <---------AHL20(2) <---------ANAC46  --------->ETT(1) ================bZIP_DOF                     <---------YAB1       <---------ANAC58<-----------HVH21   tggaccgtgacgagacccgatcttgtttttcttctaagtctttggattattttttggtcaaagagaattgggtgtttttggttcgggtcgggtcataaat  14890800  ------------>CBF                                                            <---------ANAC55(2) ----->AHL20(2)                          <------ZmHOX2a(1)                    --------->ANAC55(2) ----->AHL20(1)              --------->WOX13(1)      <---------DAG2 --------->TOE2(3) ------AHL20(1)            ------------>CBF          <----------DOF2<----------DOF2 ---->YAB1                 <---------ATHB12  <-----------GT1       <---------ICU4              <----- >ICU4           ---------->DOF2--------->YAB1 --------->ZAT6     --------->ICU4   <XXXXXXXXXXXXXXXXX   ataatccaatatgaagcccaaaagcccaaatcaattagaattaggatttactctacttttttttggtaatctttaatatcaagtatcaatttgatttctt  14890900                           ---------->DOF2                    <---------At4g35610   <<<<<<<<<<WRKY43                    --------->ZAT2        <<<<<<<<<<WRKY26                    --------->At4g35610   <<<<<<<<<<WRKY38                    <---------ZAT2      ----------->GT1                 <-----------------AGL1 <------MYB83                 <-----------------AG   <------MYB46(1)              <---------At4g35610      --------->MYB59           <---------ARR11(3) -----DOF2<-----------GT1 <------ZmHOX2a(1)        --------->TOE2(3)          <----------DOF2    <--- XXXXMIR393A/B--------->At4g35610   --------->ARR11(1)           --------->ARR11(3)      <---------ARR11(3)   tcgatatcaatttttcatctccagcttaggaaagtatagatttggtcaaatattcttaattgttgtatatattcgacattctttcagtcaatatcaattt  14891000                                                                      <---------AHL20(1)                                                                      --------->AHL20(2)                                                                   --------->YAB1                                --------->AHL20(1)     <---------YAB1 <---------AHL20(2)                                --------->AHL20(2)  <---------ATHB51  --------->AHL20(1)                                <---------AHL20(2)  --------->ICU4<---------YAB1             >>>>>>>>                          ----------->GT1   --------->TOE2(2)--------->GLK1(2)         ----------->GT1 --------RAV1(1)         ----------->GT1  >>>>>>>>>MYB98   <---------KAN4(1)  --------->CCA1(2)------   tgtggctagaaattttaagaccgtagacgggaaattttttgtttaacatatgaaattatgaataatctataataaattggatacaaaaattgtttaacat  14891100   <---------ICU4                      <---------ZAT6        <---------YAB1                         -   --------->YAB1             ----------->GT1    <-------GAMYB <-----------GT1                     -- >MYB98           <-----------GT1  <---------ANAC58     ----------->GT1       ----------->GT1  ------ --->TOE2(2)     <-----------GT1   <---------ANAC58     <---------ZAT6      <---------ATHB12   <-----   atgaataatcacatgttttttaacatgtgatatagtaacttgtgttattttcgttgttgtgttattatccaaattcaaatcagtataaaacttgttaaca  14891200                                                                                        --------->AHL20(2)                                                                                       --------->AHL20(2)                                                                                      <---------YAB1                             <---------AHL20(2)                                      --------->TOE2(3)                             --------->AHL20(2)                                    <---------YAB1             --------->ARR11(3)                                                   <---------ARR11(3)             --------->AHL20(1)    <---------AHL20(2)                             --------->ARR11(3)             <---------AHL20(1)   --------->AHL20(2)                         --------->AHL20(2) --------->DOF2           <---------YAB1               <-------TEIL          <---------AHL20(2) ------->AHL20(2)        --------->AHL20(2)           --------->CCA1(2)   <---------ARR11(3) --------->AGL15       <---------WOX13(1)       <-----------HVH21         --------->AHL20(1) ----------AGL15       <---------YAB1   <---------AHL20(2)                <---------AHL20(1)  -------   aataaagaaaacaaatattttggtgattaatataaattttatataaaaactgtgagatacaaaatgaagtattcaatatataaatatcattaaaaaataa  14891300  Previous    Next  AGI:  At3g42790.1    Description:  PHD finger family protein. similar to PHD finger family protein [Arabidopsis thaliana] (TAIR:AT5G20510.1); similar to PHD finger/nucleic acid binding protein [Olimarabidopsis pumila] (GB:ABA18096.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011) Range:  from: 14888946    to: 14890769    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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