Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           --------->ICU4       --------->YAB1       ---------->DOF2    --------->YAB1  --------->AHL20(2) -------MYB46(3) ----MYB83                                       ------>ZmHOX2a(2) ----MYB46(1)                                  <---------ARR11(3) ------TOE1(2)                        --------->ZAT18 ------TOE2(2)    ------->MYC3        --------->ZAT14 -----MYB52(1)    <-------MYC3        <---------ZAT18 ---MYB46(3)     --------->ANAC46 <-----------RAV1(1)      ------->TEIL -->ATHB12<---------ICU4        xxxxxxxxxxxxxxxx>smallRNA(s)   --------->MYB52(1)   tggttttaataaagattacacgtttcttcttaacaaatggtgcgctcgtgatctcagattgaatctaacgctgaagtttgggaaattttgttcgatcgaa  13083900                                                                                               ------                                              <---------ANAC58                             <---------                                              ----------->GT1                            --------->ARR14(2)                                              <---------ANAC58                           <---------ARR14(2)                                              <---------ANAC46                          <------NtERF2                                             <-------TEIL                               <-------GAMYB                                            --------->ARR14(2)     <------ZmHOX2a(1)   <---------MYB46(3)                                            <---------ARR14(2)   --------->ALFIN1     <---------ANAC58                                           <---------MYB52(1)   --------->ATERF1(1)   <---------ANAC46                                          <---------DEAR3(2)    <------NtERF2         <---------ANAC58                                          <---------MYB46(3)  <---------DEAR3(1)     <---------LBD16                 <---------AtMYB61       <---------DEAR3(1)   --------->ALFIN1       <------NtERF2 <-         <---------ARR14(2)              <---------TOE1(2)<---------LBD16          <---------DEAR3(1)         --------->ARR14(2)             <---------LBD16  <---------LBD16          <---------MYB52(1)   gaaaacgatagtatttgcgatggtgatggagtcaagtttatcgccggttcgtgaaatttctcgggcggaggagcaagcggcttcgttggcggatgtgtac  13084000       --------->LBD16      <---------LBD16     ------>ZmHOX2a(2)     <---------LBD16    <------ZmHOX2a(2)   --------->ARR14(2)                          --------->ANAC58   <---------ARR14(2)                          --------->ANAC58 --->SPL7                       <---------ARR14(2)   ------->GAMYB            <---------AtLEC2      - ------AtSPL3                   --------->ARR14(2) -------->P             <----------DOF2   <-------- -----ZmHOX2a(2)  ----------->GT1              --------->ANAC46     ----------->GT1---------->DOF2  <   gatcagatcggggaattgggaagtaaaatcagaggttccgatgggaaactcgcaaccctagattccaagatggtttctttggatgaaaagatggggtcac  13084100                                                                                              -------                                                                                             --------      --------->DAG2                           <---------ZAT14                            <---------- <------ZmHOX2a(2)                             --------->ZAT14                      ================= -------->ARR11(3)                    <---------GLK1(2)                             ================= ---HVH21                           ----------->ARR10                               <------ZmHOX2a(1) ---------ARR11(3)               <---------ANAC46                             --------->ALFIN1-------   aagatcaaaaattggaggttattgagagacaattagcgttgattctcagttcaatgccaagaattgagacaatacaagaagtgggaggaacgagtcactc  13084200                                                            --------->ALFIN1                      --------->TOE2(3)                    --------->LBD16                    <---------At5g28300                   <---------ANAC58         <---------ARR11(3)                               <---------ANAC58         <---------ARR14(2)                         --------->HSFB2a(1)         --------->ARR14(2)                         --------->HSFC1(2)         --------->ARR14(3)                         <---------HSFB2a(1)         <---------ARR14(3)                       <---------ARR14(2)         --------->ARR11(3)                       --------->ARR14(2)              <---------ANAC58 -->ANAC58      <---------ICU4                  --------->LBD16    <---------GLK1(2) ->WOX13(1)------>ZmHOX2a(2)                   <---------HSFB2a(2)<---------At4g35610 -HVH21  <---------AGP1                   <----------DOF2 <---------ANAC46        <---------ANAC58 =================HOX2a_HOX2a    <-------TEIL  --------->HSFB2a(2)--------->At4g35610 ================HOX2a_HOX2a --------->MYB59  <---------LBD16 <-----------HVH21<---------GLK1(1) -->ANAC58<------ZmHOX2a(2)  <---------------AtSPL8 <---------HSFC1(2)--------->MYB59    --------->GLK1(2)   aattccaccaagatctcaagattaccgtaatcaggtacatgtttctttaccggaaccttgccgtggtcagattaggcctggaattcgtgagaatttgttg  13084300                                                                                         <---------At4g35610                                                                             <<<<<<<<<AtERF-1                                                                             <<<<<<<<<AtERF-4                                                                             <<<<<<<<<AtERF-2                                                                             <<<<<<<<<AtERF-3                                                                             ------>NtERF2                                                                             <<<<<<<<<AtERF-5                                                                             <---------ERF1                                                                             <---------RAP2.3(1)                                                                            <---------ANAC46                                                                            <---------RAP2.3(3)                                                                            <---------RAP2.6(2)                                                                            <---------RAP2.3(2)                                                                            <---------DEAR3(1)                                           <------MYB83                     --------->ATERF1(2)                                           <------MYB46(1)                  <---------ATERF1(2)                                         <--------P                        --------->RAP2.6(3)                                        <-------GAMYB                    ----------->HVH21                  <----------DOF2     <---------TOE1(3)                --------->ALFIN1  --------->At4g35610            <---------ANAC58          <---------TOE2(3)       <---------GLK1(2)         --------->GLK1(2)        --------->At4g35610          <---------At5g28300      --------->ARR11(3)   ---------->DOF2        <---------At4g35610         ------------>AtMYB77      <---------ARR11(3)<----------DOF2      *TSS  <---------ANAC58       <---------ARR14(2)        <---------RVE1(1)<------NtERF2     -----   aagaatgttgagatgcctgtctttgatggggaaggcatttacggttggattgcaagagtagagagattttcaggtctggcggctataaagaagctgaacg  13084400                                             <---------ANAC58                                             <---------ANAC46                                             --------->ANAC55(2)  --------->ZAT14                                             <---------ANAC55(2)  <---------ZAT14              <-----                                             <---------ANAC58     <---------ZAT18       ---------->DOF2                                          <---------MYB52(1)<---------LBD16   =======================                                        <---------------AtSPL3    <-------TEIL=====================bZIP_DOF     <---------AtMYB61                --------->ZAT2        --------->TOE2(2) <---------O2 <---------At4g35610   <----------DOF2         <---------REM1(1)<-------TEIL    --------->TOE1(2) --------->O2 <---------ZAT2  <---------ANAC58      --------->ALFIN1<---------------AtSPL8    --------->ZAT18     <---------YAB1  <---------ANAC58<---------ZAT6      <---------ZAT2 --------->MYB59          <---------TGA1a <------ ---->ATHB12  <---------MYB52(1)      <---------At4g35610  ----------->RAV1(2)--------->ANAC55(2)   attggctttggtttcagttagtgtgagtggtgaagcactaagctggtacgtgattttggtaacctgggtgcagtaagtagacgtgattttgaaagctggt  13084500                       <---------ANAC58         <------ZmHOX2a(1)                       <---------ANAC58      <---------HSFB2a(2)    <---------DOF5.7(2)<---------ANAC46      --------->HSFB2a(2)                        <---------ANAC46    ---------->DOF2<---------At4g35610  --------->HSFC1(2)                           --------->ARR14(2) --GAMYB <---------LBD16           --------->TOE1(3)                                 <---------ARR14(2) ==MYC_MYB <------NtERF2<----------DOF2 <---------HSFC1(2)                           --------->GLK1(2) ---MYB46(3)  <---------WOX13(1)  ----------->RAV1(2)                               <---------GLK1(2)   tgaagttaaagtcgggattgatgctgcgttttggtaacctgaagcttcgaggacctagtcagagtttgttttgtattaaacagacaggttctgtgtctta  13084600                                                                                        --------->ARR14(2)                                                                                        <---------ARR14(2)                                                                                 <---------At4g35610                                                                                 --------->At4g35610                              --------->ANAC58                                  <---------ARR14(2)                              --------->ANAC46                                  --------->GLK1(2)                       --------->YAB1                                           --------->ARR14(2)                       <---------ICU4                                          <---------GLK1(1)                      <---------YAB1                                  <---------------AGL15                <------ZmHOX2a(1)                                     ===============================              <---------TOE2(3)                                       --------------->AGL15     <----          --------->CCA1(2)   --------->ANAC58                        ===============================     --------->LBD16 <-----------GT1            --------->CCA1(2)    <-----------------AGL1  <-------   atatgtccagagatttgaggatttatcatcacaagtaagtggattagatgatatgaagttggaaggcattttcttgaatgggtatctgaagaaatgcagg  13084700                              --------->TOE2(3)                              --------------->AGL15                              <---------------AGL15                              --------->TOE1(3)                             <-----------------AGL1                             ----------->RAV1(2)                             ----------------->AGL2                             <-----------------AG                             ----------------->AGL1                             <-----------------AGL3                  --------->TOE2(3)               --------->ANAC58        <-------MYC2         <-----------------AGL2        ------->MYC2         ----------------->AGL3        <-------MYC3        -------->P               ===================================HOX2a_HOX2a        ------->MYC3--------->ANAC46                 <------ZmHOX2a(2) =============================================MADS_MADS --ZmHOX2a(1)  --------->ANAC46                     --------->ARR11(3)                  ---------->DOF2 ==============================================MADS_MADS           <---------ZAT6    --------->ZAT18 ----RAV1(2)   --------->ANAC58        <--------P   <---------ARR11(3)           <------ZmHOX2a(1)   agttaatgcatatgcacaaaccacaaaacttacctgaaatggtagctatggcaagatcaatggagactagtgtgatgagaagaggagtgcaaaaggagtt  13084800  Previous    Next  AGI:  At3g32091.1    Description:  transposable element gene. gypsy-like retrotransposon family, has a 1.3e-109 P-value blast match to F1M23 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family) Range:  from: 13084306    to: 13091769    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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