Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                     --------->ANAC58                                   --------->ANAC58                 --------->At4g35610               --------->YAB1      --------->ANAC46             <-----------GT1   <---------ALFIN1            <-----------GT1    --------->ZAT6                                             ------->TEIL            --------->YAB1--------->At4g35610                      <-----------GT1<---------ALFIN1    <---------YAB1       --------->ARR11(3)                    --------->YAB1   ------>ZmHOX2a(1) ---------At4g35610      <---------ARR11(3)            <---------YAB1     ------>ZmHOX2a(1)   acagctatgcttatttatcatctcaaacatctcacactcgccatttggaatacaactatgcttatttataaacttcctaatcctccacattgaatctgaa  11967800                                                           ----------->RAV1(1)             ------->TEIL                <---------ANAC58                          ------->GAMYB                --------------                <---------ANAC58            <---------ANAC58                           <-------------             <---------ARR14(2)   --------->ANAC46      --------->ANAC46               --------------             --------->ARR14(2) <-----------GT1         --------->ANAC58              --------->GLK1(2)         <---------At4g35610   --------->ZAT14          --------->ANAC58             <---------GLK1(2)  <---------ARR14(2)           <---------ZAT14      --------->YAB1                --------->YAB1  <---------GLK1(2)           <---------DAG2<---------ANAC58 <---------ALFIN1 <---------AHL20(2)  --------->ARR14(2)          <----------DOF2------>ZmHOX2a(1)               --------->AHL20(2)   ggcagaatcgcagcatatacttgccaaaaacactttactccatcttccttaccatcacaacccacacatttgaatccaattttatcagaatcgtacctat  11967900                                                    --------->ANAC58                                                    --------->ANAC46                                                    --------->ANAC58                                              --------------------->WRI1                                              <----------DOF2                                           <----------DOF2                                        ------>NtERF2                                       <---------DEAR3(1)                        --------->TOE2(1)                 <---------ZAT2       --------->RAP2.6(3)                        --------->TOE1(1)                 --------->ZAT2      ------>NtERF2---------->DOF2               <---------HSFB2a(2) - ->AtSPL3    --------->ANAC46        <---------ATERF1(1) <---------ALFIN1       --------->HSFB2a(2)-- --AtSPL3 <---------ZAT18           --------->DEAR3(1)   --------->REM1(1)  <---------ANAC58       <- ->AtSPL8 --------->ZAT18           ----------->HVH21  ----------->RAV1(1)  <---------ANAC58  <------   actgcttcagattgcacccagttcggagagcgtaatcgacgacggcttctttgaaagcaacaccactgaaaaatgtttgcttctcgtacaaatggccatc  11968000                                                                                                <----                                                                                             <-------                                                                                            <--------                                                                                         --------->MYB52(2)                                                                                        <-------TEIL --------->ANAC58                                                                      --------->ARR14(2) --------->ANAC58                    ---------->ID1          --------->LBD16           <---------ARR14(2) ----->NtERF2             <---------ANAC58                 <---------LBD16          <---------TOE2(3) ------->DEAR3(1)         <---------ANAC58              <----------DOF2        <---------ARR14(2) --------ALFIN1     --------->ARR11(3)             <-----------HVH21           --------->ARR14(2)   < ---ATERF1(1)       <---------ARR11(3)        <---------REM1(2)     --------->YAB1  <---------TOE1(3)   gccacgctggagatgtgtttgaaatcttgcttcgtcttcgtcgttttcttcacggtcgctctccggataaacatcatggtggatttgaggttcgtcggtc  11968100                                                               ------>MYB83                                                               ------>MYB46(1)                                                              ----------->RAV1(1)                                                       --------->bZIP60(1)            <---------ICU4                                                  <---------ARR14(2)                 <---------YAB1     --------->YAB1                               --------->ARR14(2)       --------->WRKY18(1) ---TEIL                                         <------ZmHOX2a(1)        <-----------HVH21 --DEAR3(2)<---------ARR14(2)                 <-----------RAV1(2)  <-------TEIL    --------->YAB1   - -DEAR3(1) --------->ARR14(2)     <---------CCA1(2) ------>ZmHOX2a(2)  <---------TOE1(2)            - ---------ATHB12           <-------TEIL       ============================RAV --------->AtLEC2      -   cattcattcagcatttcttccatgtgaaattcatctctatcttcggcttcaggatcgacatcaccaacattcgtagggtcatgcatcatcatcgccatct  11968200                          --------->GLK1(2)                      --------->DAG2            <---------At4g35610            --------->At4g35610                                                                  ----           ----------->RAV1(1)                                                    --------->ATHB12         <---------At4g35610                                       <---------ARR11(3)   <---------ANAC46         --------->At4g35610     <---------GLK1(1)   --------->MYB52(2)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <---------ALFIN1    ---------->DOF2                <-------TEIL   <---------GLK1(2)   <---------LBD16 -------->ANAC58 <------ZmHOX2a(2)       <---------DAG2            --------->ARR11(3) --------->ALFIN1 -------->ANAC58--------->ARR14(2)       <----------DOF2  <------NtERF2   <---------TOE1(3)   ------- -------->ANAC46<---------ARR14(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <---------TOE2(3)  --------   ccacgaccttgagcagcagatcgaaaagcttctgggtttctcacttttctagggttcgtcgggattttagatttttagggtttttgatttgggggtaaag  11968300                                                                                               <-----                        <------------CBF                                            --------------->AGL15                     <---------------AGL15                                          <----------DOF2                     ===============================================================================MADS_MADS                     --------------->AGL15                          <---------TOE2(3)          <-----                    --------->ANAC55(2)                             <---------TOE1(2)     <---------MYB46(3)                 --------->ARR14(2)                                 <---------TOE1(3)  <------------CBF                 <---------ARR14(2)                                 <---------TOE2(2) --------->ATHB12      <------------CBF --------->ATHB12                    <------MYB46(1)      <---------MYB52(1)    <---------AHL20(2)<---------AHL20(2)                   <------MYB83        --------->At5g28300  <---------TOE2(3) <---------ANAC55(2)                   --------->MYB59     ----------->GT1 <------ ------->GT1     <---------GLK1(2)                        <---------TOE2(3)------------>MYB.PH3(1)--- -->DAG2      <---------ANAC46                   ----------->GT1 <---------ANAC58   <---------------AGL15 -->DOF2     <---------LBD16 <-------GAMYB      ----------->GT1  <---------ANAC58   <---------DAG2<--   ggttaatgaattgttttcggatacttaattgggttgtattcggtttagtctgggtaaaattaggtttgcttaggtttaaacggttactttattggttaag  11968400                                  <------------CBF                           --------->ALFIN1                         <---------ANAC58                         <---------ANAC46                         --------->TGA1a      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                   -------     ==============================bZIP_DOF                 ------>NtERF2                 <------NtERF2     ---------->DOF2     <---------TGA1a                  --------->LBD16             <------MYB83     <---------ZAT14     ==============MYC_MYB          <---------LBD16               <------MYB46(1)     --------->ZAT14     =================================bZIP_DOF  --------->At4g35610 <---------ANAC46 ----ANAC55(2)           <---------ANAC58               <---------ANAC46             <---------AtMYB61 ----ANAC46              <---------O2                  <---------LBD16               --------->MYB111(1) -----------------TaNAC69(2)   <-------GAMYB        --------->ARR11(3)     --------->ARR11(3)-------- ------>ZAT14            --------->O2--------->ATHB12 ------>ZmHOX2a(2)    <---------ARR11(3)<------- -------ZAT14          <-----------HVH21       <----------DOF2      <---------At4g35610 --------->ALFIN1   tatacagtaaaccgattaataccagcgtcgtggggttattgatttcgaacttttgatctcggggacattaagctgtagaacttcgatttggtggggatat  11968500                                                                                                    -                                                                                      xxxxxxxxxxxxxxx                                                                                      <xxxxxxxxxxxxxx                                                                                      <xxxxxxxxxxxxxx                                                                                     xxxxxxxxxxxxxxxx                                                                                   xxxxxxxxxxxxxxxx>smallRNA(i)                                                                                  xxxxxxxxxxxxxxxx>smallRNA(i)                                                                              --------->ALFIN1     --                   ----------->GT1                                    --------->HSFB2a(1)          <-     <-----------GT1           xxxxxxxxxxxxxxxx>smallRNA(i) ----------->HVH21--------->LBD16       <- -->CCA1(2)       <---------TOE2(3)                       <---------ANAC58  <---------ANAC46       -- ->ARR14(2) <---------------AGL15                         <---------ANAC58  <---------O2          <-- --ARR14(2)--------------->AGL15      ---------->DOF2     <---------ANAC46 <---------LBD16   <-------   aggcatttaacttccatattatggataaatagaccgaggtgaaagaacaggctctatctggcgtgatatcgatagttcccgtggggaaatagaccgtttt  11968600                                                             <----------DOF2 -------->LBD16                                             <---------ANAC58 x>smallRNA(i)                                        <---------ARR11(3) xxsmallRNA(s)                                        --------->ARR11(3) xxsmallRNA(i)                                        --------->AHL20(1)         <------ZmHOX2a(2) >smallRNA(i)                                         <---------AHL20(1)        --------->ARR14(2) ------->HSFC1(1)                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) --------HSFC1(1)                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --------HSFB2a(2)                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ------->HSFB2a(2)   ----------->GT1          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   <---------ALFIN1 -------LBD16      ----------->GT1         <------ZmHOX2a(1)<---------ANAC58<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) --MYB52(1) ---------->DOF2        <---------ZAT6  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  --------->TOE2(3)   tccagaaaaacatgaaaagaatagagaaaaacagagagtgtaagaggacacctcgatatattgctttctccatggtctcatcgatccacaacctcagttt  11968700  Previous    Next  AGI:  At3g30370.1    Description:  similar to SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G18050.1) Range:  from: 11967659    to: 11968198    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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