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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
----------->
GT1
<---------
ARR14(2)
------>
ZmHOX2a(2)
--------->
YAB1
<------
ZmHOX2a(2)
<---------
MYB52(1)
--------->
CCA1(2)
------------>
MYB.PH3(1)
<---------
ARR14(2)
===
------>
ZmHOX2a(2)
------>
ZmHOX2a(2)
--------->
ARR14(2)
--------->
ANAC58
<---------
ARR11(3)
<---------
At4g35610
--------->
ARR11(3)
--------->
ANAC58
--------->
ARR11(3)
--------->
At4g35610
<---------
ARR11(3)
--------->
ANAC46
<------
ZmHOX2a(2)
<---------
AGP1
<---------
YAB1
--------->
AGP1
<---------
MYB52(1)
---
<-----------
GT1
<---------
ARR14(2)
<-----------
ARR10
--------->
ARR11(3)
----------
DOF2
--------->
ARR14(2)
--------->
TOE1(2)
--------->
ARR14(2)
<--------
cgattttccgatcgatcttac
ctctgattttggatctgaaaactgttatgaaaacttgggaacgagat
ctactcagaaccgttaagaactcgccaaactc
11787500
--------->
MYB52(1)
--------->
ARR14(2)
<---------
ARR14(2)
<---------
ANAC46
--------->
MYB52(1)
----------->
HVH21
----------->
TGA1
xxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
<-----------
HVH21
<---------
TGA1a
<---------
ANAC58
<---------
bZIP60(2)
--------->
TGA1a
--------->
O2
--------->
ANAC55(2)
<---------
ANAC58
<---------
ALFIN1
<---------
O2
<------
ZmHOX2a(2)
<---------
ATHB51
==========================
HOX2a_HOX2a
--------->
ANAC46
--->
ZmHOX2a(1)
<xxxxxxxxxxxxxxxx
smallRNA(i)
<----------
DOF2
<---------
ATHB12
------>
ZmHOX2a(2)
-
ALFIN1
<-----------------------
TaNAC69(2)
<-----------
GT1
XXXXXXXXXXXXXXXXXXXX>
MIR403
<---------
YAB1
cttcggacgtgacgggaaacggatcaccaattccaccacttgaattgtttcctt
ctttcacatattcacacaaaaacccaatagttgaagttatgatcca
11787600
--------->
LBD16
-
<---------
LBD16
---
<---------
ARR14(2)
----
--------->
GLK1(2)
-----
------>
MYB83
=====
------>
MYB46(1)
-----
--------->
MYB52(1)
-----
--------->
MYB55(1)
-------
<---------
MYB46(2)
<---------
bZIP60(1)
------>
ZmHOX2a(1)
--------->
ANAC58
<---------
ANAC58
--------->
bZIP60(1)
<---------
ANAC58
<---------
DEAR3(1)
--------
<------
MYB83
<---------
MYB59
--------->
MYB52(1)
===
<------
MYB46(1)
--------->
MYB46(3)
--------->
ANAC58
--------->
YAB1
<---------
ANAC55(2)
----------->
TGA1
<---------
YAB1
--------->
ANAC55(2)
------->
TEIL
<-------
<---------
ZAT14
--------->
ATHB12
<---------
MYB111(1)
----------->
HVH21
tgaattcaattgctaagtgaaacaatttcagtagtatagttcataactatgataggttttccttac
ctaacaatccggcgatgaacggtgacgaaaccaa
11787700
<---------
At4g35610
--------->
At4g35610
<---------
WRKY12
--------->
DOF5.7(2)
<-----------
HVH21
<---------
O2
>>>>>>>>>>
HY5
--------->
O2
<---------
ANAC46
<---------
TGA2(1)
--------->
bZIP60(1)
<---------
bZIP60(1)
<---------
bZIP60(2)
<---------
ANAC55(2)
--------->
TGA2(1)
--------->
TGA1a
<---------
ANAC58
-------->
ANAC46
<---------
TGA1a
<---------
ANAC46
---->
GAMYB
<-----------
STF1
<---------
MYB46(3)
----->
MYB46(3)
<---------
TGA2(2)
<---------
ICU4
--->
P
<---------
ZAT18
----------->
HVH21
--------->
ICU4
<--------
====================================
MYC_MYB
<---------
YAB1
----------->
HVH21
->
MYB83
----------->
TGA1
--------->
YAB1
--------->
ALFIN1
->
MYB46(1)
<-----------
HVH21
<---------
YAB1
<------
ZmHOX2a(1)
-->
AtMYB61
<---------
O2
------>
NtERF2
--------->
YAB1
--------->
ANAC58
->
MYB46(3)
--------->
O2
--------->
LBD16
--------->
ICU4
--------->
ANAC58
====================================
MYC_MYB
--------->
YAB1
<---------
ANAC58
<---------
TOE2(3)
--
MYB52(2)
--------->
AtMYB61
<---------
LBD16
--------->
ICU4
--------->
CCA1(2)
ccacgtagaacacttacgaccacaacgtgacgtcaactccggcgttacaacgatgatgatgatggctgggattgagatgtgagataaggaagtgatggtg
11787800
--------->
ZAT2
--------->
At4g35610
<---------
ANAC58
<---------
TGA1a
--------->
REM1(2)
<---------
O2
--------->
ALFIN1
--------->
YAB1
--------->
TGA1a
--------->
ALFIN1
<---------
YAB1
<------
--------->
O2
<---------
ANAC46
--------->
YAB1
<--------
<---------
ANAC55(2)
--------->
CCA1(2)
<----------
CDC5
<--------
--------->
ANAC55(2)
--------->
ARR11(3)
--------->
ANAC58
<-------
GAMYB
<---------
ANAC58
--------->
REM1(2)
<-------
TEIL
--------->
ANAC58
<---------
MYB46(3)
-
AtMYB61
--------->
GLK1(2)
<---------
ARR11(3)
<---------
ALFIN1
--------->
ALFIN1
atgaagaagacgtgagaagaagctgtgtggagagggagatatatacatattatcat
acacacgcttagggtttttctattagagaagttgggctgttatt
11787900
------------>
CBF
--------->
ARR14(2)
<------
MYB83
--------->
GLK1(2)
<------
NtERF2
<------
MYB46(1)
<---------
ARR14(2)
<----------
DOF2
<--
------
CBF
<---------
ANAC58
---------->
DOF2
------------>
CBF
<------
-
YAB1
<---------
ANAC58
<---------------
AGL15
--------->
LBD16
---------
-
MYB52(1)
--------->
MYB59
<---------
ALFIN1
<------
NtERF2
<---------
DAG2
<-----------
GT1
gggcctcattagagagttgggtctcacaattctctcccacttaaagagaattcgtccccgagttcaatactttttgttcgactatattttccattcatac
11788000
<------
ZmHOX2a(1)
<---------
TOE2(3)
--------->
YAB1
<----------
DOF2
<---------
ATHB12
<---------
ANAC58
------------>
CBF
<---------
ANAC58
<---------
GLK1(1)
<---------
YAB1
---------->
DOF2
--------->
GLK1(1)
--------->
AHL20(2)
---------
--------
DOF2
--------->
ARR14(2)
---------->
ID1
<---------
AHL20(2)
---
CCA1(2)
---------->
TaMYB80
<-----------
RAV1(1)
<------------
CBF
------
>
YAB1
<---------
TOE2(3)
<----------
DOF2
<---------
AHL20(2)
----------
ctttagaaaagttttgtttatttcaaacacagtttttaagggatatccaataaggatgctttgttgctctgaatttttttattgctttagacatggtaaa
11788100
<---------
ANAC46
<---------
ANAC58
------->
MYC3
<-------
MYC3
<-------
PIF4
------->
PIF4
<-------
MYC2
------->
PIF5
------->
MYC2
--------->
AHL20(2)
------->
MYC4
<---------
AHL20(2)
<-------
PIF5
<---------
AHL20(2)
<---------
YAB1
<---------
ANAC58
--------->
YAB1
------------>
CBF
<---------
ANAC46
--------->
ICU4
>
At5g28300
<---------
ZAT6
<---------
ANAC58
<-----------
HVH21
------>
ZmHOX2a(1)
----->
ARR10
<-------
TEIL
------------>
CBF
<----------
DOF2
<---------
RAP2.6(3)
--------->
AHL20(2)
->
GT1
--------->
YAB1
----------->
HVH21
<---------
DAG2
<---------
ANAC58
--------->
At5g28300
<-------
attctcaattacgatacattttctagtgacaatgtctcttcgaaactttatggcatgtgccgttttaagcgtcgcagtaattaaaatttcctgatttttt
11788200
--------->
YAB1
<---------
YAB1
--------->
AHL20(2)
<---------
AHL20(1)
<---------
AHL20(2)
--------->
AHL20(1)
<---------
YAB1
<---------
ARR11(3)
--------->
ICU4
-----
--------->
YAB1
<---------
ICU4
--------->
ATERF1(1)
----------->
GT1
<---------
AHL20(1)
<---------
YAB1
--------->
ALFIN1
--------->
DAG2
<---------
ARR11(3)
--------->
ICU4
---------->
DOF2
<--------
---------->
DOF2
--------->
AHL20(1)
--------->
YAB1
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
--
AHL20(2)
--------->
YAB1
<---------
YAB1
xxxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
ttttaaaaaaaagttaatctatatcaaaatattcaaaatatttcttcatatgataattaatatgataactaaaactctcaaaggtgtctcccaaaatcat
11788300
xxxxxxxxxxxxxxxx>
smallRNA(i)
------->
TEIL
<-----------
HVH21
<---------
ANAC58
------->
GAMYB
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
<---------
ANAC46
--------->
At4g35610
<---------
ANAC46
<---------
ANAC58
<---------
ANAC58
<---------
At4g35610
<---------
ANAC58
<-----------
GT1
<---------
ANAC58
---->
At4g35610
<---------
ANAC58
<---------
ICU4
<---------
TOE2(3)
<xxxxxxxxxxxxxx
-
ARR11(3)
----------->
RAV1(2)
--------->
ZAT18
<---------
CCA1(2)
<---------
AtLEC2
<------
ctcaactgtctcgcctgaatattgtgtgtattgtttccaagtgtgaacaatttttacttgaatcttcgaggttgtcttgaatggcttgatagtattgagg
11788400
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AGI:
At3g30160.1
Description:
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35320.1)
Range:
from: 11786129
to: 11787856
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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