Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                      --------->ANAC58                                                                                    --------->ANAC58                                                                                  --------->YAB1                                <---------ATHB12                            ----------->RAV1(1)                           ----------->RAV1(1)                           --------->ANAC55(1)   ------                           ------>MYB46(1)                               <---------ANAC55(2)  <------                           ------>MYB83                                  --------->ANAC55(2)  <------                         --------->MYB46(3)                              --------->ANAC58     -------                         ------->GAMYB        ----------->RAV1(1)        --------->ANAC46     <------                       -------->P            --------->MYB46(3)          --------->ANAC58     -------                      ------->GAMYB        -------->P           =====================================    ---------->DOF2  --------->MYB46(3) <---------ANAC58        <----------DOF2  <---------ATHB12 ->MYB83           <-----------GT1      <---------ANAC58     --------->ANAC58  --------->WOX13(1) ->MYB46(1)       <-----------GT1  ------->TEIL              --------->ANAC58 --------->MYB46(3)   ccgataaaaagacaccatttttaacaacccaacaatgaatttgcttacccacagagaagaaacaagcttttaaacacgcaacaatcaagaaatgaaacgt  10741800                                                                                            <--------                                                                --------->ALFIN1        <---------ARR14(2)                                                              <---------ZAT2            --------->ARR14(2)                                                 --------->CCA1(1)                      <---------GLK1(2)                                                 --------->RVE1(1)                    ----------->ARR10                                    --------------->AGL15     <---------TGA1a       <---------At4g35610 --->TOE1(2)                        <---------------AGL15     --------->O2      <---------HSFB2a(2) ---O2                             ----------------->AGL2     --------->TGA1a ----------->RAV1(2) ---ANAC55(2)         <<<<<<<<<TBF1----------------->AGL3     <---------O2 <---------At4g35610  ----- -->TGA1a      --------->ARR11(3)  <-----------------AGL3     --------->ZAT2 --------->GLK1(2) <----- ---TGA1a      <---------ARR11(3)  ================================================================== -->O2  <------ZmHOX2a(1)<<<<<<<<<TBF1  --------->YAB1      <-----------RAV1(2) --------->HSFB2a(2) ===bZIP_DOF  <---------CCA1(2)  --------->REM1(1)<---------ARR11(3)    ----------->ARR10--------->GLK1(2)   gagataactaggagttatatcttcttcttcttccttcaccattaatagaaaatatcgtaaacccaggtgaggctgagagcttctggagcagattcttatc  10741900        <---------DOF5.7(2)      --------->DOF5.7(2)    --------->YAB1    <---------ANAC46 -------AGL15             --------->TOE2(3)                ---------->DOF2           ----------->GT1 ---->YAB1             <---------GLK1(2)                 <---------ZAT6 <---------AHL20(2)  --------- ----YAB1             <------ZmHOX2a(1)              <---------ZAT14   <---------AHL20(2)  --------->DAG2 =======MADS_MADS   --------->MYB59             <------ZmHOX2a(1)      --------->AHL20(2) ---------->DOF2   atagtatcgtaaacgaatgagttaggaatctcaatcgaatcgaatatagaggaagcgtagtgaaagtgtttgtttaaattgggaagatggagaaaagctg  10742000                                                                                                   <-                                                                                                   <-                                                                                 <-----------RAV1(1)               --------->ANAC55(2)                                         <---------ZAT14     <-----               <---------ANAC46                                          <---------ANAC58      <-----               <---------ANAC55(2)                        --------->ALFIN1<----------DOF2      <-----               <---------ANAC58                        --------->GLK1(2) <---------ANAC58  <---------MYB52(1) >GLK1(2)      <---------ANAC58              <---------YAB1   --------->ATHB12   --------->ALFIN1  <-   tgagaagtttgctaattgcgtaagtgtttcgatggaggccatggatgatgaatagagaatgtgttgatttgatttgcttcactgtgttgcaacgttggct  10742100                               <---------ANAC58    --------->GLK1(2)          <---------ANAC58 --------ANAC58        --------->ATHB12                            <-----------HVH21          ------- --------ANAC58      <---------WOX13(1)                            *TSS                 <---------MYB52(1) ----ANAC58        --------->ATHB12                         <---------ANAC46           <----------DOF2 ----ANAC46       --------->ICU4                            <---------O2  <------MYB46(1)     <------ ----ANAC58       <---------YAB1                            --------->O2  <------MYB83----------->GT1 --------ANAC46------------>ATHB5            ---------->CDC5<---------bZIP60(2)      --------->ZAT18<   tgcgagaatcaaactcttccatgattgatggaagcttgagacgacgctcatcgtctatgttgacgtcgatgtcatttggtttagaagcgcgttatttaac  10742200                               <--------P                               <---------WOX13(1)                              <-------GAMYB                             <------MYB46(1)                             <------MYB83                             <---------MYB46(3)                            <---------AtMYB61                            --------->MYB59                --------->ANAC46                --------->ANAC58     <---------AHL20(2)  --------->ATHB12     --------->AHL20(2) <---------YAB1 -->MYB52(1)    --------->ANAC58                                                 <-------TEIL -----GT1      --------->RAP2.6(3)              <---------ARR11(3)           <---------ARR11(3) -------TEIL  --------->MYB52(1)    ---------->DOF2 <-------TEIL  --------->TOE1(2)                --   ggttcatttttttaaaaaacggcacgatgtttggttgataaagacatcaagatgtgcatatgtgtgaacataagagcaagatgtgcataaaaacaacaat  10742300                                                                              ----------------->AGL2                                                                            --------->GLK1(2)                                                                            <---------ARR14(2)                                                                           <---------GLK1(1)                                                                    <---------ICU4                                                                    --------->ATHB51                                                                    -------->HAHB4                                                                   --------->ICU4                                                                   <---------YAB1                                                                 --------->YAB1                                                  --------->At4g35610  <---------LBD16                                            --------->ICU4      <---------AHL20(2)      <---------MYB52(1)                                          --------->TOE2(3)     <---------YAB1----------------->AGL3 ----->TEIL             <-------TEIL     <---------ZAT6 --------->ARR11(3) --------->GLK1(1)   gtattttgaattgacaattagataaatgcattatagactgatagtcttaattagctaagttattgtataattatcgggaatccaaaatcagttagtgtat  10742400                                                                         ---------->DOF2                                                                        --------->AHL20(2)                                                                        <---------AHL20(2)                                                                       <---------YAB1                                                                    <---------YAB1                  -                              --------->MYB52(1)                   <---------ARR11(3)            <---                            --------->MYB46(3)                  --------->SPL7                   ----                            <---------ATHB12                   <---------MYB52(1)                ----                           --------->ANAC46                   --------->LBD16         --------->AHL20(2)                   <---------ARR14(2)                        --------->ANAC55(2)      <---------AHL20(2)                   --------->ARR14(2)                        --------->ANAC46        <---------AHL20(2)                   <---------ARR11(3)                     --------->ARR14(2)         <---------AHL20(1)                   <---------GLK1(2)                      <---------ARR14(2)         --------->AHL20(1)                   --------->ARR11(3)                    <---------CCA1(2) <----------ID1 <----------      --------->AtLEC2    --------->WOX13(1)        ----------->GT1--------->ARR11(3)--------->AHL20(2)   tttgaaccatgaaaaaacacagatattccaatcaacgattttttgtatcgaaatttgttatatccgtaagataattaaagacaaaaatttattttctaac  10742500                                                                                                   <-                                                                                                  <--                                                                                               ------                                                                                               <-----                                                                                               ------                                                                      <---------GLK1(1)        <-----   --------->YAB1                                                     <---------WOX13(1)    <-------- -------->YAB1                                                       <---------ANAC58       --------- -------DOF2    <-------TEIL                               ----------->GT1                 <---------AHL20(2) ----->TOE2(3)--------->ARR14(2)           --------->CCA1(2)         <---------ANAC58      --------->AHL20(2) ----->TOE1(3)<---------ARR14(2)          --------->ARR11(3)    >>>>>>>>>CBP60g       <---------TOE2(3) -GT1--------->MYB46(3)    ---------->DOF2<---------ARR11(3)    >>>>>>>>>SARD1     --------->AHL20(2)   tttaataacaaacacatatacgtttttgtaaaagagttgatgaagatatatgaaaattagatggaaatttggattgccttcaaaatttaagaattaattt  10742600                                                                                                 <---                                                                                       <---------YAB1                                                                                      <---------AHL20(1) ----------RAV1(1)         --------->ARR11(3)                                         --------->AHL20(1) -------YAB1          <<<<<<<<<MYB1                                                   <---------AHL20(2) --->AHL20(2)         <---------MYB52(1)                                             <---------AHL20(2) ----AHL20(1)         <<<<<<<<<MYB2                                                  --------->YAB1 --->AHL20(1)     <-------TEIL                                                       --------->AHL20(2) ----AHL20(2)<---------WOX13(1)             <---------AHL20(2)               ------>MYB46(1)   ------ -AHL20(2) --------->YAB1 <------ZmHOX2a(1)<---------AHL20(2)                ------>MYB83    -------- >AHL20(2)<---------YAB1--------->MYB59    --------->AHL20(2)              --------->TOE1(2) <-------   attgttgttgttatgatagattcagttaggattttgttttgagaattaattttgtaaatgtagtttggatttataaacctagcaaaattatatttctaaa  10742700  Previous    Next  AGI:  At3g28660.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G28640.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14887.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 10739952    to: 10742167    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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