AthaMap

Position

Exon region

Intron region

UTR region

AGI

% Restriction to highly conserved TF binding sites (0-100)

1 10 20 30 40 50 60 70 80 90 100
<---------O2 --------->TGA1a --------->O2 -------- <---------ANAC46 <------- <---------TGA1a -------- ======================bZIP_DOF <-------- <-----------HVH21 --------- <-----------TGA1 --------->HSFB2a(2) --------->ANAC58 <---------ARR11(3) --------->ANAC58 --------->ARR14(2) <---------HSFB2a(2) --------->ALFIN1 ===========================bZIP_DOF --------->ARR14(2) <-------MYC3 --------->TGA1a <---------ARR14(2)<---------LBD16 ------->MYC2 --------->O2 <---------------AGL15 <---------ARR14(2) <-------MYC2 --------->bZIP60(2) <------ZmHOX2a(1) --------->CCA1(1) ------->MYC3 --------->ANAC46 <----------DOF2 <---------RVE1(1) <---------ZAT18 --------->DAG2 --------------->AGL15 --------->RVE1(1) --------->ANAC46 ---------->DOF2 <---------ANAC58 <---------GLK1(1) --------->ANAC58 ===================bZIP_DOF <---------TOE2(3) --------->GLK1(1) --------->ANAC58 --------->YAB1 <---------O2 <---------ANAC46 --------->ARR11(3) ------>GLK1(1) =============================bZIP_DOF <---------ANAC58 <---------ARR11(3) -------GLK1(1) <---------TGA1a ========================bZIP_DOF <------ZmHOX2a(1)--------->ARR11(3)
atttccaagacactgcgcatgtgggaatcatatcaaaaaagtccaacgtcacgtcgagttgctttaaggaggaactgatatagaagatatctggaaatct	10642900
<-------TEIL --------->LBD16 <---------ZAT14 <---------ANAC46 --------->ZAT14 <---------ARR14(2) ----------->RAV1(2) <---------GLK1(2) ------->TEIL --------->ARR11(3) -------->P <---------ANAC46 ------->GAMYB <---------ANAC58 <---------At4g35610 ----- ->GLK1(2) <---------MYB52(2) <---------ANAC58 --------->At4g35610 <---- --ARR14(2) --------->MYB46(3) <---------LBD16 --------->ZAT2 <---------SPL7 ->ARR14(2) --------->GLK1(1) --------->ARR14(2) <------ZmHOX2a(2)<---------ANAC46 -GLK1(1) <---------GLK1(1) xxxxxxxxxxxxxxxx>smallRNA(i) --------->ARR14(2)<---------ANAC58 >GLK1(1) ------->TEIL --------->MYB52(1) <---------LBD16 <---------ARR14(2)<---------ANAC58
gtaagtcttggtgtatgtgaaatccctaacgaacacagacagattttgcacattgcgggagagagcaaactcgatccagctatcaacctggggtacagtg	10643000
<---------TOE1(3) --------->LBD16 --------->REM1(2) <-------TEIL <-------TEIL --------->ALFIN1 <------MYB46(1) <---------TOE2(3) <---------ANAC55(1) <------MYB83 <---------ANAC58 <---------TOE1(3) <---------ANAC46 <---------MYB46(3) <---------------AtSPL8 <---------ANAC58 <---------AtMYB61 <---------ANAC58 --------->DOF5.7(2) <------NtERF2 <---------TOE2(3) <---------ANAC58 <---------MYB52(1) <---------YAB1 ----------------------->TaNAC69(2) ---->ZAT14 --------->ICU4 <------ZmHOX2a(1) <---------CCA1(2) -----ZAT14 ----------->GT1 <---------ANAC58 --------->MYB59 <---------ANAC58
ttgtcgttaaggtccataacaagtttgaaactagttattatgggagccgtgtaggaagttagggtttggttcgtctctccgtgcttgagtttaatgtcga	10643100
---- <--- ----- <---- <----- ------ <------ZmHOX2a(1) <-------- --------->ARR11(3) <-------- ------>NtERF2 --------->HSFB2a(1) ---------->DOF2 <---------REM1(1) --------->ANAC58 --------->ANAC58 <---------ARR14(2) <---------ARR14(2) --------->ANAC58 <---------YAB1 <---------ARR11(3)--------->ALFIN1 --------->GLK1(2) --------->ALFIN1 --------->ANAC46 --------->ANAC58 --------->ARR14(2) --------->ARR14(2)
gacaaggtgtctcgcaccatacatgcctccatcgtcgtgataagacggaagttctcatggccaaatcggtgggaataaaggagagaatatggtgaaggat	10643200
<---------CCA1(2) <---------MYB52(1) <------NtERF2 ------>NtERF2 --------->PCF2 --------->PCF5 <------NtERF2 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->ATERF1(1) <---------ANAC46 ------>NtERF2 ----------->RAV1(2) <------NtERF2 <---------ATERF1(1) --------->At4g35610 <---------ATERF1(1) <---------RAP2.3(1) <---------At4g35610 ------>NtERF2 <---------DEAR3(2) ----->ARR11(3) <---------DEAR3(1) <---------DEAR3(1) ------ARR11(3) <---------TOE1(2) <------NtERF2 ---->GLK1(1) <---------KAN4(1) <---------MYB46(3) --------->ATERF1(1) -----GLK1(1) --------->KAN4(1) --------->ALFIN1 <---------ATERF1(1) -- ----ARR11(3) --------->ZAT18 <---------MYB52(1) <-----------HVH21 --- --->ARR11(3) --------->ARR14(2) <---------MYB46(3) <---------SPL7 <----- -TOE1(3) <---------GLK1(1)--------->KAN4(2) <---------DEAR3(1)<---------DEAR3(1) <------ -TOE2(3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) <---------LBD16 <------NtERF2 <------
atcatctggcatatagttgatgaaatctgcaccatcgattattcgttggattttgcggtggctacgatgttgtcgtcgtcggccccgtttctctcgcctt	10643300
--------->YAB1 ------------>CBF <---------YAB1 --------->AHL20(2) ----- --------->ICU4 <----------DOF2 <---------AHL20(2) <------NtERF2 ------->ANAC46 <---------TOE2(3) <---------ICU4 <--------- ------->ID1 <----------DOF2 <---------ICU4 <-----------TBP --------->RAP2.6(3) -----DOF2 <xxxxxxxxxxxxxxxxxxxxxxx smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxx ---DAG2 <---------At4g35610 --------->ETT(2) <---------AHL20(2) ---------->DOF2 ----DOF2 --------->At4g35610 <---------ETT(2) --------->AHL20(2) <------------CBF
ttcgccatgataacgcagatgtctttaggttttcttttgtctacagaagaattacatttaatatttatatacaatcggcctccgattgaaaagacggcaa	10643400
--------->YAB1 -------->HAHB4 <---------ICU4 --------->ICU4 <---------ATHB51 --------->YAB1 ------>NtERF2 --------->YAB1 ------->TEIL <------NtERF2 <----------DOF2 <---------ATERF1(1) --------->ARR11(3)<---------ICU4 <-----------GT1 ------>NtERF2 <---------AHL20(2) <---------AHL20(2) <---------YAB1 --------------->AGL15 <---------DEAR3(1) <---------TOE2(3) --------->AHL20(2)-- ----->DOF2 <---------ICU4 <---------ICU4 --------->ANAC46 --------->YAB1 --------->LBD16 <- -ID1 ------->TEIL <---------------AGL15 --------->RAP2.6(3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) -- xxxxxxxxxxxxxxxxx>smallRNA(fl3) ----------->HVH21 <-----------TBP <---------LBD16 <---------YAB1
aagctatgaatcgactaatgacccttttaagcattaccccctcgacggcccaaaatgtatttataagattatggccgggcctattaattatgacaagttt	10643500
- -- <- --- <-- <---------ARR11(3) ----- --------->ARR11(3) ----- --------->AHL20(1) <---- --------->AHL20(2) <---- <---------AHL20(1) ----- <---------AHL20(2) <---- --------->AHL20(2) ----------->GT1 ------ --------->AHL20(2) <---------ZAT18 --------->CCA1(2) <----- ------->TOE1(3) --------->DAG2 <------NtERF2 <----- ---------DOF2 <------------CBF --------->ZAT18 <-------GAMYB ------ ------->TOE2(3) ---------->DOF2 <---------LBD16 --------
actttaacaaaataatatattgatactagataaagcccacttatttaggcggatgtaagatagaaaaataaacttgatagtatttgaattttgtataata	10643600
-------->ATHB1 <---------AHL20(2) <---------AHL20(2) <---------ICU4 <---------AHL20(2) --------->ATHB12 <---------AHL20(2) -------->HAHB4 --------->AHL20(2) --------->ATHB51 <---------ARR11(3) --------->ICU4 --------->AHL20(1) <---------ATHB51 <---------AHL20(1) <---------YAB1 --------->ARR11(3) <--------HAHB4 -------->AHL20(2) --------->ATHB51 ------->AHL20(2) <--------ATHB1 --------AHL20(2) -------->HAHB4 ------>ICU4 --------->YAB1 -------YAB1 <---------ICU4 --->HAHB4 --------->AHL20(2) ---->ATHB51 <---------YAB1 --------->AHL20(2) ----ATHB1 <---------ATHB51 --------->YAB1 ----HAHB4 --------->YAB1 <---------YAB1 ---->YAB1 --------->AHL20(2) <-----------GT1 --------->AHL20(2) < -----ICU4 <---------AHL20(2) <---------AHL20(2) <---------AHL20(2) -- --->ICU4 --------->AHL20(2) --------->AHL20(1) --------->AHL20(2) <- ----YAB1 --------->AHL20(2) --------->AHL20(2) <---------AHL20(2) --- ----ATHB51 <---------AHL20(2) <---------AHL20(1) <---------AHL20(1) --------->TOE2(3) --->AHL20(2) <---------AHL20(1) --------->AHL20(2) --------->AHL20(2) <---------AHL20(2) ->YAB1 <---------AHL20(2)--------->ICU4 <---------AHL20(2) <---------AHL20(2) --------->AHL20(2)
attaatatattttttgatattttatttaataattattgttttaaataaaattttcagtcttctgtattttattttaattatacacatttaatcttatata	10643700
------>ZmHOX2a(1) --------->TOE2(3) <------ZmHOX2a(2) --------->ARR14(2) <---------ARR14(2) -------- --------->MYB46(3) <---------AHL20(2) ---------YAB1 <------------MYB.PH3(1) --------->ANAC58 <---------AHL20(2) ------->ARR11(3) --------->MYB52(1) --------->ANAC46 <---------AHL20(1) --------ARR11(3) <-----------GT1 <---------AHL20(2) --------->ANAC58 --------->ARR11(3) ------>YAB1 --------->YAB1 <---------AHL20(2) ----------->GT1 --------->AHL20(2)
tgatatttgaattctaaatagtaaccgatccttattttatatttagtttagcatatagaaaaaaaaacgcaaatttctattttatatattcaattttgta	10643800

AGI:	At3g28410.1
Description:	F-box family protein. Identical to Putative F-box/LRR-repeat protein At3g28410 [Arabidopsis Thaliana] (GB:Q9LSJ3); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G02700.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN83117.1); contains InterPro domain Leucine-rich repeat 2 (InterPro:IPR013101); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810)
Range:	from: 10641389	to: 10643308	Orientation: Reverse
Links:	TAIR MIPS

Please cite the corresponding publications when using AthaMap.