Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                               <---------AHL20(2)                                            --------->AHL20(2)                                           <---------YAB1                                         <--------HAHB4                                         <---------ICU4                  --------->ARR14(2)                                         --------->YAB1        <-------TEIL             <---------YAB1                                        --------->ICU4    <---------AHL20(2)--------->ZAT6          < ------WRI1          <---------YAB1     <---------YAB1<----------DOF2<---------TOE2(3)<----------DOF2   agggagagtccaaactactcaatgtgattacattggtatacgattattatatgcttcttttaaaatgcataaacgtttccactacaaactttgattcaac  10319300                 --------->ANAC55(2)                 <---------ANAC55(2)                 <---------ANAC55(1)                 <---------ANAC46                 <---------ANAC58                   <---------ZAT6                <---------AHL20(2)                 <---------ANAC58          --------->ATHB12                       --------->AHL20(2)                --------->MYB52(2)        --------->ICU4                         --------->AHL20(2)          <---------MYB52(1)              <---------YAB1            --------->ANAC46          <----------DOF2    --------->YAB1<---------ICU4           --------->ANAC58                <   ---------->DOF2       <---------ZAT6<---------YAB1               --------->ANAC58                - ----------DOF2<-----------GT1   --------->GLK1(2)  ----------->GT1--------->RAP2.6(3) ----------->GT1   gtctttgaagccctttgttacttgttagtgttcataatcttgtgattattggtagagttaattcggcaatacggcaatacccataaaattagaaaaatag  10319400                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                    <                                                                                                    x                                                                                                    <                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                   xx                                                                                                   xx                                                                                                   xx                                                                                                   xx                                                                                                   <-                                                                                                   xx                                                                                                   xx                                                                                                   xx                                                                                                   *TSS                                                                                                   xx                                                                                                   xx                                                                                                   xx                                                                                                   xx                                                                                                   xx                                                                                                   xx                                                                                                   xx                                                                                                   xx                                                                                                   xx                                                                                                   xx                                                                                                   xx                                                                                                   xx                                                                                                   xx                                                                                                   xx                                                                                                   xx                                                                                                   xx                                                                                                   xx                                                              --------->AHL20(2)                   xx                   <---------AHL20(2)                         <---------AHL20(2)                   xx             --------->MYB52(1)                              <---------YAB1                        xx          --------->At4g35610                              <--------HAHB4                          xx          <---------At4g35610                              --------->ATHB51                        xx          <---------STY1(2)                                <---------ICU4                          xx          --------->STY1(2)                          --------->GLK1(1)                             xx      --------->ZAT2--------->AHL20(2)        ----------->HVH21                                    xx      --------->At4g35610              <------------CBF   <---------YAB1                           xx    <------ZmHOX2a(1)       <---------ZAT18   <---------YAB1 --------->ICU4                        xx --------->YAB1    <---------ATHB12  --------->AHL20(2)   --------->ICU4                          <-- ---------ATHB12   <---------ATHB51 --------->AHL20(2)  --------->YAB1                            <-- -------->ICU4     --------->AHL20(2)<---------AHL20(2)<---------ATHB12         <---------YAB1    <--   caatgaggagctagctaacaaataattttgcacacttatttaattgttatgacagaaatcataattaataaacaaactaaatgtgattagaacaacaagg  10319500                          xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                          xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)               <---------YAB1              xxxxxxxxxxxxxxxxx>smallRNA(fl3)              xxxxxxxxxxxxxxxx>smallRNA(fl3)             xxxxxxxxxxxxxxxx>smallRNA(fl3)            xxxxxxxxxxxxxxxxxx>smallRNA(si3)            xxxxxxxxxxxxxxxxx>smallRNA(se3)            xxxxxxxxxxxxxxxxx>smallRNA(si3)           xxxxxxxxxxxxxxxx>smallRNA(fl3)          <---------ZAT6  xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)          xxxxxxxxxxxxxxxxxxx>smallRNA(l2)          xxxxxxxxxxxxxxxxxxx>smallRNA(se3)          xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          xxxxxxxxxxxxxxxxxx>smallRNA(se3)        xxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)       xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <------MYB83----------->ARR10   xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   xxxxxxxxxxxxxxxxx>smallRNA(si3)   <------MYB46(1)       <----------DOF2  --------->MYB59<---------GLK1(2)  <---------AtMYB61      xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <---------MYB55(1)      xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) -------GAMYBxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2) ---------MYB52(1)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxx>smallRNA(si3)<---------ANAC58 xxxxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxx>smallRNA(le3) ---------DOF2xxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxx>smallRNA(se3)<---------ANAC58                --------->ANAC58 xxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                  --------->ANAC46 xxxxxxxxxxxxxxxxxx>smallRNA(fl3)<---------ANAC58      --------->HSFB2a(2) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)        xxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     xxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxx>smallRNA(se3) --------->ALFIN1    <---------GLK1(2) xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    --------->LBD16  --------->ANAC58 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    --------->LBD16  --------->SPL7 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)xxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxx>smallRNA(s) <---------MYB46(3)     xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxx>smallRNA(le3)        --------->AHL20(2) xxxxxxxxxxxxxx>smallRNA(i)xxxxxxxxxxxxxxxx>smallRNA(s)<---------HSFB2a(2) <---------AHL20(2) xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)xxxxxxxxxxxxxxxx>smallRNA(si3)  <---------DAG2                   - xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------->PCF5 <---------LBD16 <---------AHL20(2)           < xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxx>smallRNA(s)    <----------DOF2         <--------- xxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxx>smallRNA(s2)    <---------DAG2           <--------- xxxxxxxxxxxxxxxxx>smallRNA(fl3) <---------ANAC58xxxxxxxxxxxxxxxxxxx>smallRNA(l2)         --------->ANAC46 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <-----------GT1    <- -------ANAC58xxxxxxxxxxxxxxxxxx>smallRNA(se3)  xxxxxxxxxxxxxxxxxxxx>smallRNA(l2)         --------->bZIP60(2) -------ANAC58xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)<-----------GT1     -- -------ANAC46xxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)     ------>ZmHOX2a(1)   gcgtttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaacgcccctttttatttttttaactcctcaacgtcagg  10319600                                                                        ------------>CBF                                                                       --------->ANAC46                                                                       --------->ANAC58                                                                       --------->ANAC58                                                                      ------->TEIL     <---------MYB52(1)                                               <-------TEIL  <---------ANAC46                                                    --------->SPL7 <---------LBD16                                                    <---------SPL7 -------->MYB52(1)                                                  --------->TOE1(2) ---------ALFIN1                                                 --------->MYB52(1) --TGA1                                                   --------->ATHB12  --------->KAN4(1) --HVH21                                                 <---------YAB1--------->ANAC55(2)        <-- -----NtERF2<---------ANAC46                    --------->ARR14(2)--------------->AtSPL3     <------- --------->HVH21                   --------->TOE2(3)<---------LBD16 --------->TOE2(2)  --------->LBD16   cctcacgggtattttcgtaaacatacaaacgatacaacctcatctatttgtatatgcgcatgatagcaaacgtacgcaatattctattccccaaaatacc  10319700                                                      --------->YAB1                             ----       <---------ICU4                      --------->ANAC58                                     -----       <--------HAHB4                      --------->ANAC58                                  --------      <---------ATHB12                     --------->ANAC46                              --------->ANAC58    --------->WOX13(1)          <---------At4g35610  <---------ATHB12                    --------->ANAC58 -------DAG2        ------>ZmHOX2a(1) ------>ZmHOX2a(1)                           --------->At4g35610 ----GT1    <-----------GT1<----------DOF2*TSS     --------->WOX13(1)  ----------->GT1 ---------->DOF2   ccttatccatcatttttctatcctctcatctttcatcttcctcacacacaatccaatcaaaacacacagagagaagaaaaactcagaagaaaagccaaag  10319800                    ------>NtERF2                 <---------ATERF1(1)           <---------MYB52(1)                                   -                --------->DEAR3(1)        --------->GLK1(2)                                       ---                <---------DEAR3(1)      --------->MYB46(3)                                       <---               <------NtERF2         --------->MYB46(3)                                        ------               --------->ATERF1(1)   --------->REM1(1)                                       --------             <---------ANAC58      ----------->RAV1(1)                                      --------- ------->GT1 <---------ANAC58   --------->ANAC58              ------>ZmHOX2a(1) <---------ATHB12 ---- ---->DAG2   <---------ANAC46   --------->ANAC58   ------>ZmHOX2a(1)          --------->WOX13(1)----- -->DOF2<---------ICU4          --------->YAB1 --------->ARR14(2)           <---------ATHB12<--------   agtgaaacaaaaatggcgtcgacgactctctcaatcgcaacaacaatccgttcctcatcttatcctactctcgcttccatcaatcacttcccttcccgaa  10319900                                                                                             <-------                                                                                             --------                                                                                            <--------                                                                                            ---------                                                                                            ---------                                                                                            ---------                                                                                            <--------                                                                                            <--------                                                                                       <------NtERF2                                                                                      ------>NtERF2                                                                                      <-----------HVH21                                                                                     --------->RAP2.3(3)                                                                                     --------->RAP2.3(2)                                                                                     --------->DEAR3(1)                                                                                    --------->RRTF1(1)                                                                                    --------->ATERF1(1)                                                                                    <------NtERF2                                                                                    --------->RAP2.3(1)                                                                                    --------->DEAR4(2)                                                                                    --------->ERF1                                                                                   --------->ABI4(1)                                                                                   <---------ATERF1(1)                                                                                   ------>NtERF2 ----                                                                                  --------->ANAC46                                                                                  --------->RAP2.3(3)    --------->AtMYB61                                                             --------->RRTF1(3)   --------->MYB46(3)                                         --------->ANAC58    --------->RAP2.3(2) --------->AtMYB61                                            --------->ANAC58    <---------DEAR3(1) <---------ALFIN1                                         --------->AtLEC2        --------->DEAR3(1) -------->MYB46(3)                 <-------TEIL         --------->DEAR3(1)       --------->DEAR4(2) ------>AtMYB61                 <---------MYB46(3)    ------>MYB83               --------->RAP2.3(1) ------MYB55(2)                <---------AtMYB61      ------>MYB46(1)            --------->ERF1<----- --->ARR14(2)                <---------MYB46(3)      <---------ALFIN1            --------->ATERF1(1) ->LBD16  --------->ARR14(2) --------->MYB55(2)     --------->MYB46(3)           --------->ORA47(2) >HSFB2a(2)                 --------->ALFIN1        <---------MYB55(2)          <---------ATERF1(1) ----->MYB46(3)             <---------DEAR3(1)   <---------WRKY18(1)           ------->GAMYB<-------- ---->SPL7<---------GLK1(1) <---------AtMYB61   --------->WRKY12              --------->MYB46(3)<---- -HSFB2a(2)              <---------DEAR3(1)     --------->WRKY38(1)     <-----------HVH21   ---------   ccaccaccatcgaattcccctctcgcttcggtggtggttcatcatccacattgacccaccgtgcaacccatctccgtccaatcgccgccgtcgaagctcc  10320000                         <---------ARR11(3)                        --------->GLK1(1)                      --------->LBD16 --ARR14(2)         ------>ZmHOX2a(2) ->ARR14(2)        <------ZmHOX2a(2) -At4g35610       <---------ARR14(2) >ZAT2 --------->HSFB2a(2) >At4g35610       --------->ARR14(2) >HSFC1(2)     ------>ZmHOX2a(2) -HSFC1(2)    <------ZmHOX2a(2)                                                          --------->ATERF1(1) -HSFB2a(1)  --------->ARR14(2)                                 xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ----->LBD16 <---------ARR14(2)                            ------>ZmHOX2a(1)         <---------ANAC58 ----LBD16   --------->ARR11(3)                        --------->ARR14(2)            <---------ANAC58 -ZAT2 <---------HSFB2a(2)                             <---------ARR11(1)        <---------ARR14(2) -----ANAC46 <---------ARR11(3)                        <---------ARR14(2)        --------->ARR14(2) >HSFB2a(1)----------->ARR10           ------->GAMYB  <---------CCA1(2)    --------->ANAC46    <-----   ggagaaaatcgagaagatcggatccgaaatctcatccctaaccctcgaagaagctcgtatcctcgtcgactatctccaagacaaattcggtgtctcccca  10320100                                                      <---------At4g35610                                                      <------NtERF2                                                      <-------GAMYB                                                      --------->At4g35610                                                     <---------ATERF1(1)                                                     <---------ERF1                                                     <---------RAP2.3(1)                                                    <---------RAP2.3(2)                                                    <---------RAP2.6(2)                                                    <---------ANAC46                                                    <---------RAP2.3(3)                                                    <---------DEAR3(1)                                                    --------->ATERF1(2)                                                   <------NtERF2                                                   --------->DEAR4(2)                                                   ------>NtERF2                                                   --------->RAP2.3(1)                                                 --------->ALFIN1                                                ------>NtERF2                                                <---------LBD16                                               <---------ANAC46                        <-------GAMYB          <---------ANAC58                       --------->MYB55(2)      <---------ANAC58                       <---------DEAR3(2)      <---------bZIP60(2)                       <---------MYB46(3)    --------->ABI4(2)                      <---------DEAR3(1)     ------>NtERF2                     <------NtERF2           <---------ATERF1(1)                    ------------>AtMYB77    --------->ALFIN1                    <---------RAP2.3(1)   <---------MYB46(3)                   <---------DEAR3(1)    <---------DEAR3(1)                   <---------RAP2.3(2)  <------NtERF2------>NtERF2                   --------->DEAR3(1)  --------->MYB52(1)                  --------->At4g35610  ------>NtERF2<---------ATERF1(2)               --------->ZAT2         ----------->HVH21               <---------ZAT2         ------->GAMYB--------->ATERF1(1)               --------->At4g35610   --------->MYB46(3)               <---------At4g35610  <---------At4g35610              ----------->RAV1(1)   --------->ZAT2--------->DEAR3(1)              ================================RAV<---------DEAR3(1)            --------->LBD16       <-----------RAV1(2)<---------MYB46(3)           <---------ALFIN1       <---------ALFIN1<---------ATERF1(1)           --------->ANAC58   --------->At4g35610<------NtERF2           --------->ANAC46--------->At4g35610<------NtERF2<---------ANAC46          <---------LBD16<--------P --------->At4g35610  <---------ZAT14          <------NtERF2<---------ATERF1(1)<---------DEAR3(2) --------->ALFIN1                       <         <---------ATERF1(1)  <---------At4g35610--------->ATERF1(1)                           <-----        --------->DEAR3(1)<---------MYB46(3)<---------DEAR3(1)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        --------->PCF2<---------ANAC46--------->DEAR3(1) --------->ZAT14                     --------  <----------DOF2 <---------At4g35610--------->DEAR3(2) <----------DOF2--------->MYB52(1)  <---------YAB1 ----ALFIN1--------->ANAC58<---------At4g35610--------->ATERF1(1) <------ZmHOX2a(1)    <-------GAMYB-   ctctctttagcccccgcagcagcggcggttgctgctccagccgacggtggcgcggcggctgtagtggaggagcaaacagagttcgatgtggttatcaatg  10320200  Previous    Next  AGI:  At3g27820.1    Description:  ATMDAR4/MDAR4 (MONODEHYDROASCORBATE REDUCTASE 4); monodehydroascorbate reductase (NADH). Identical to Probable monodehydroascorbate reductase, cytoplasmic isoform 2 [Arabidopsis Thaliana] (GB:Q9LK94); similar to ATMDAR1 (MONODEHYDROASCORBATE REDUCTASE 1), monodehydroascorbate reductase (NADH) [Arabidopsis thaliana] (TAIR:AT3G52880.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN77104.1); contains InterPro domain FAD/NAD-linked reductase, dimerisation; (InterPro:IPR016156); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class I; (InterPro:IPR001100); contains InterPro domain FAD-dependent pyridine nucleoti Range:  from: 10316351    to: 10319293    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g27825.1    Description:  pre-tRNA. tRNA-Pro (anticodon: TGG) Range:  from: 10319499    to: 10319570    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g27830.1    Description:  RPL12-A (RIBOSOMAL PROTEIN L12-A); structural constituent of ribosome. Identical to 50S ribosomal protein L12-1, chloroplast precursor (RPL12A) [Arabidopsis Thaliana] (GB:P36210); similar to RPL12-C (RIBOSOMAL PROTEIN L12-C), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT3G27850.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14755.1); contains InterPro domain Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (InterPro:IPR014719); contains InterPro domain Ribosomal protein L7/L12, oligomerisation; (InterPro:IPR008932); contains InterPro domain Ribosomal protein L7/L12, C-terminal; (InterPro:IPR Range:  from: 10319742    to: 10320669    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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