Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                            <---------ANAC46                                                                          <---------ANAC58                                                                       <---------DEAR3(1)                                              --------->ZAT14          <---------RAP2.3(3)                                           --------->MYB52(1)     <-----------RAV1(1)                                        <---------At4g35610     ----------->RAV1(2)                                        --------->At4g35610     <---------At4g35610                 -                                        <---------ZAT2          --------->At4g35610                 -                                        --------->ZAT2         ------->TEIL                         -            ---------->DOF2            ------->TEIL          <------NtERF2<---------ANAC58         --         --------->YAB1             --------->ANAC58    <---------RAP2.6(2)<---------SPL7         <--        <---------YAB1              --------->ANAC58  <-----------RAV1(1)<------NtERF2           ----        --------->ICU4              --------->ANAC46  ======================RAV  <----------DOF2 <--- -------->ALFIN1     --------------------->WRI1    <---------MYB46(3)<---------MYB46(3)         <----   aagtgtggtcatgataaagaagcctttgtatgtatggcacgcagctactggagtcgttgtggctgcatctgtggctgcgttcgcgttttggtatgggagg  10319100    --------->LBD16   --------->DEAR3(1)   <---------ANAC46  <------NtERF2 ------>NtERF2 -------->ANAC58 -------->DEAR3(1) -------->ANAC58                                                                <---------MYB46(3) ------->ATERF1(1)                                                       ---------->ID1 -------ATERF1(1)                            --------->ATHB12        <---------ANAC46 ----->ARR14(2)                             <-------TEIL          <---------MYB52(1) <--------------- ------ARR14(2) <------ZmHOX2a(1)   --------->ALFIN1             <-------GAMYB <---------AtMYB61 --ZmHOX2a(1)  ----------->GT1      <-----------RAV1(1)         <-----------RAV1(1)<---------MYB46(3)   agacgccgtagatggtgaggaaaaaaaaaactcttcaagtgttggattcattggaaatggaacttgctgttgtttgtagcattggtgggagaaatataga  10319200                                             <---------AHL20(2)                                            --------->AHL20(2)                                           <---------YAB1                                         --------->YAB1                                         <---------ICU4                  --------->ARR14(2)                                         <--------HAHB4        <-------TEIL             <---------YAB1                                        --------->ICU4    <---------AHL20(2)--------->ZAT6          < ------WRI1          <---------YAB1     <---------YAB1<----------DOF2<---------TOE2(3)<----------DOF2   agggagagtccaaactactcaatgtgattacattggtatacgattattatatgcttcttttaaaatgcataaacgtttccactacaaactttgattcaac  10319300                 <---------ANAC46                 <---------ANAC55(2)                 <---------ANAC58                 <---------ANAC58                 --------->ANAC55(2)                <---------ZAT6                <---------AHL20(2)                 <---------ANAC55(1)       <---------ICU4                         --------->AHL20(2)                --------->MYB52(2)        <---------YAB1                         --------->AHL20(2)          <----------DOF2                 --------->ICU4            --------->ANAC58          <---------MYB52(1) --------->YAB1--------->ATHB12         --------->ANAC46                <   ---------->DOF2       <---------ZAT6<---------YAB1               --------->ANAC58                - ----------DOF2<-----------GT1   --------->GLK1(2)  ----------->GT1--------->RAP2.6(3) ----------->GT1   gtctttgaagccctttgttacttgttagtgttcataatcttgtgattattggtagagttaattcggcaatacggcaatacccataaaattagaaaaatag  10319400                                                                                                    <                                                                                                    <                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                   xx                                                                                                   xx                                                                                                   xx                                                                                                   xx                                                                                                   xx                                                                                                   xx                                                                                                   xx                                                                                                   xx                                                                                                   xx                                                                                                   xx                                                                                                   xx                                                                                                   xx                                                                                                   xx                                                                                                   xx                                                                                                   xx                                                                                                   xx                                                                                                   xx                                                                                                   <-                                                                                                   xx                                                                                                   xx                                                                                                   xx                                                                                                   xx                                                                                                   *TSS                                                                                                   xx                                                                                                   xx                                                                                                   xx                                                              <---------AHL20(2)                   xx                   <---------AHL20(2)                         --------->AHL20(2)                   xx             --------->MYB52(1)                              <---------YAB1                        xx          <---------At4g35610                              <---------ICU4                          xx          --------->STY1(2)                                <--------HAHB4                          xx          <---------STY1(2)                                --------->ATHB51                        xx          --------->At4g35610                        --------->GLK1(1)                             xx      --------->At4g35610                     ----------->HVH21                                    xx      --------->ZAT2--------->AHL20(2) <------------CBF   --------->ICU4                           xx    <------ZmHOX2a(1)       <---------ZAT18   <---------YAB1 --------->ICU4                        xx --------->YAB1    <---------ATHB51  --------->AHL20(2)   <---------YAB1                          <-- ---------ATHB12   <---------ATHB12 --------->AHL20(2)  --------->YAB1                            <-- -------->ICU4     --------->AHL20(2)<---------AHL20(2)<---------ATHB12         <---------YAB1    <--   caatgaggagctagctaacaaataattttgcacacttatttaattgttatgacagaaatcataattaataaacaaactaaatgtgattagaacaacaagg  10319500                          xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                          xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)               <---------YAB1              xxxxxxxxxxxxxxxx>smallRNA(fl3)              xxxxxxxxxxxxxxxxx>smallRNA(fl3)             xxxxxxxxxxxxxxxx>smallRNA(fl3)            xxxxxxxxxxxxxxxxxx>smallRNA(si3)            xxxxxxxxxxxxxxxxx>smallRNA(si3)            xxxxxxxxxxxxxxxxx>smallRNA(se3)           xxxxxxxxxxxxxxxx>smallRNA(fl3)          xxxxxxxxxxxxxxxxxxx>smallRNA(se3)          xxxxxxxxxxxxxxxxxxx>smallRNA(l2)          xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          xxxxxxxxxxxxxxxxxx>smallRNA(se3)          <---------ZAT6  xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        xxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)       xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   <------MYB83----------->ARR10   <------MYB46(1)       xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   xxxxxxxxxxxxxxxxx>smallRNA(si3)   xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <---------AtMYB61      xxxxxxxxxxxxxxxx>smallRNA(s)  --------->MYB59<---------GLK1(2) xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <---------MYB55(1)      <----------DOF2 xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ---------MYB52(1)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) -------GAMYBxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2) xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxx>smallRNA(i)        xxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxx>smallRNA(si3)   xxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxx>smallRNA(i) <---------MYB46(3) xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxx>smallRNA(fl3)   xxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                       --------->ANAC58 xxxxxxxxxxxxxx>smallRNA(si3)<---------ANAC58           --------->ANAC46 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)xxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)xxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                --------->HSFB2a(2) xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                 <---------HSFB2a(2) xxxxxxxxxxxxxx>smallRNA(se3)<---------ANAC58xxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      xxxxxxxxxxxxxxxx>smallRNA(fl3) ---------DOF2xxxxxxxxxxxxxxxxxx>smallRNA(se3)     <---------GLK1(2) xxxxxxxxxxxxxxxxxx>smallRNA(se3)<---------ANAC58  xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2) xxxxxxxxxxxxxxxxxx>smallRNA(fl3)<---------ANAC58xxxxxxxxxxxxxxxxxxx>smallRNA(l2) xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxxxxx>smallRNA(s2)     <---------DAG2 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    --------->LBD16   --------->ANAC58 xxxxxxxxxxxxxxxx>smallRNA(se3)--------->ALFIN1 xxxxxxxxxxxxxxxxxxxx>smallRNA(l2)          <--------- xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxx>smallRNA(si3) <---------DAG2           <--------- xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxx>smallRNA(le3)<----------DOF2        --------->bZIP60(2) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <-----------GT1     - xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxx>smallRNA(se3)  <---------AHL20(2)       < xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) --------->PCF5 <---------LBD16 <---------AHL20(2) --------->ANAC46 -------ANAC58xxxxxxxxxxxxxxxx>smallRNA(se3)--------->LBD16 --------->SPL7 --------->AHL20(2)      <- -------ANAC46xxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   ------>ZmHOX2a(1) -------ANAC58xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)<-----------GT1     --   gcgtttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaacgcccctttttatttttttaactcctcaacgtcagg  10319600                                                                        ------------>CBF                                                                       --------->ANAC55(2)                                                                       --------->ANAC58                                                                       --------->ANAC46                                                                      --------->SPL7     <---------MYB52(1)                                               ------->TEIL  <---------ANAC46                                                    <-------TEIL <---------LBD16                                                    --------->TOE1(2) --TGA1                                                             --------->TOE2(2) --HVH21                                                         --------->MYB52(1) -------->MYB52(1)                                        --------->ATHB12  --------->KAN4(1) ---------ALFIN1                                         <---------YAB1--------->ANAC58           <-- -----NtERF2<---------ANAC46                    --------->ARR14(2)--------------->AtSPL3     <------- --------->HVH21                   --------->TOE2(3)<---------LBD16 <---------SPL7     --------->LBD16   cctcacgggtattttcgtaaacatacaaacgatacaacctcatctatttgtatatgcgcatgatagcaaacgtacgcaatattctattccccaaaatacc  10319700                                                      --------->YAB1                             ----       <--------HAHB4                      --------->ANAC58                                     -----       <---------ICU4                      --------->ANAC46                                  --------      <---------ATHB12                     --------->ANAC58                              --------->ANAC58    --------->WOX13(1)          <---------At4g35610  <---------ATHB12                    --------->ANAC58 -------DAG2        ------>ZmHOX2a(1) ------>ZmHOX2a(1)                           --------->At4g35610 ----GT1    <-----------GT1<----------DOF2*TSS     --------->WOX13(1)  ----------->GT1 ---------->DOF2   ccttatccatcatttttctatcctctcatctttcatcttcctcacacacaatccaatcaaaacacacagagagaagaaaaactcagaagaaaagccaaag  10319800                    ------>NtERF2                 <---------ATERF1(1)           <---------MYB52(1)                                   -                <---------DEAR3(1)        --------->GLK1(2)                                       ---                --------->DEAR3(1)      --------->MYB46(3)                                       ----               <------NtERF2         --------->MYB46(3)                                        ------               --------->ATERF1(1)   --------->REM1(1)                                       --------             <---------ANAC58      ----------->RAV1(1)                                      <-------- ------->GT1 <---------ANAC58   --------->ANAC58              ------>ZmHOX2a(1) <---------ATHB12 <--- ---->DAG2   <---------ANAC46   --------->YAB1 --------->ARR14(2)             --------->WOX13(1)----- -->DOF2<---------ICU4          --------->ANAC58   ------>ZmHOX2a(1)        <---------ATHB12---------   agtgaaacaaaaatggcgtcgacgactctctcaatcgcaacaacaatccgttcctcatcttatcctactctcgcttccatcaatcacttcccttcccgaa  10319900                                                                                             --------                                                                                             <-------                                                                                            <--------                                                                                            ---------                                                                                            ---------                                                                                            <--------                                                                                            ---------                                                                                            <--------                                                                                       <------NtERF2                                                                                      <-----------HVH21                                                                                      ------>NtERF2                                                                                     --------->RAP2.3(3)                                                                                     --------->RAP2.3(2)                                                                                     --------->DEAR3(1)                                                                                    --------->ATERF1(1)                                                                                    --------->ERF1                                                                                    --------->RAP2.3(1)                                                                                    <------NtERF2                                                                                    --------->DEAR4(2)                                                                                    --------->RRTF1(1)                                                                                   ------>NtERF2 ----                                                                                   <---------ATERF1(1)                                                                                   --------->ABI4(1)                                                                                  --------->RRTF1(3)                                                                                  --------->RAP2.3(3)    --------->AtMYB61                                                             --------->DEAR3(1)   --------->MYB46(3)                                         --------->ANAC58    <---------DEAR3(1) --------->AtMYB61                                            --------->ANAC58    --------->ANAC46 <---------ALFIN1                                         --------->AtLEC2        --------->RAP2.3(2) -------->MYB46(3)                 <-------TEIL         --------->DEAR3(1)       --------->RAP2.3(1) ------>AtMYB61                 <---------MYB46(3)    ------>MYB83               --------->ERF1<----- ----->MYB46(3)                <---------AtMYB61      ------>MYB46(1)            --------->ATERF1(1) --->ARR14(2)                <---------MYB46(3)      <---------ALFIN1            --------->DEAR4(2) ->LBD16  <---------GLK1(1)  --------->MYB55(2)     --------->MYB46(3)           --------->ORA47(2) -HSFB2a(2)                 <---------AtMYB61       <---------MYB55(2)          <---------ATERF1(1) ------MYB55(2)             <---------DEAR3(1)   <---------WRKY18(1)           ------->GAMYB<-------- ---->SPL7--------->ARR14(2)--------->ALFIN1    --------->WRKY12              --------->MYB46(3)<---- >HSFB2a(2)              <---------DEAR3(1)     --------->WRKY38(1)     <-----------HVH21   ---------   ccaccaccatcgaattcccctctcgcttcggtggtggttcatcatccacattgacccaccgtgcaacccatctccgtccaatcgccgccgtcgaagctcc  10320000  Previous    Next  AGI:  At3g27820.1    Description:  ATMDAR4/MDAR4 (MONODEHYDROASCORBATE REDUCTASE 4); monodehydroascorbate reductase (NADH). Identical to Probable monodehydroascorbate reductase, cytoplasmic isoform 2 [Arabidopsis Thaliana] (GB:Q9LK94); similar to ATMDAR1 (MONODEHYDROASCORBATE REDUCTASE 1), monodehydroascorbate reductase (NADH) [Arabidopsis thaliana] (TAIR:AT3G52880.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN77104.1); contains InterPro domain FAD/NAD-linked reductase, dimerisation; (InterPro:IPR016156); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class I; (InterPro:IPR001100); contains InterPro domain FAD-dependent pyridine nucleoti Range:  from: 10316351    to: 10319293    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g27825.1    Description:  pre-tRNA. tRNA-Pro (anticodon: TGG) Range:  from: 10319499    to: 10319570    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g27830.1    Description:  RPL12-A (RIBOSOMAL PROTEIN L12-A); structural constituent of ribosome. Identical to 50S ribosomal protein L12-1, chloroplast precursor (RPL12A) [Arabidopsis Thaliana] (GB:P36210); similar to RPL12-C (RIBOSOMAL PROTEIN L12-C), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT3G27850.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14755.1); contains InterPro domain Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (InterPro:IPR014719); contains InterPro domain Ribosomal protein L7/L12, oligomerisation; (InterPro:IPR008932); contains InterPro domain Ribosomal protein L7/L12, C-terminal; (InterPro:IPR Range:  from: 10319742    to: 10320669    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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