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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                      --------->DAG2
                                                <---------------AGL15
                                                --------->TOE1(3)
                                                --------->TOE2(3)
                                                --------------->AGL15
                                               ----------->RAV1(2)
                                               <---------ANAC55(2)
                 <------MYB46(1)             <-----------GT1
             <---------ZAT14             --------->AHL20(2)
            <---------ZAT6               <---------AHL20(2)        --------->ATHB12
      --------->WOX13(1)                 --------->AHL20(1)    <<<<<<<<<<MYB80          --------->MYB52(2)
  ----------->GT1<------MYB83           <---------AHL20(2)    <------MYB83             <-------TEIL
-----AHL20(2)--------->ZAT14            --------->AHL20(2)    <------MYB46(1)         <---------MYB52(1)
-AHL20(2)<---------ICU4         --------->MYB52(1)   ---------->DOF2                <---------MYB46(3)
 
ttttttggttaatcagtgttcggttttaaaaatactaccgaaattaaattacctgaaaaagtatttggtttgatttgatttagttatcggttcgttttag  10233100
                                                                               --------->bZIP60(1)--
                                      <---------YAB1                           <---------bZIP60(1)--
                                --------->AHL20(2)                        <---------ICU4         <--
                             --------->YAB1      ----------->GT1       --------->YAB1           <---
                        <---------AHL20(2) <---------AHL20(2) --------->AHL20(2)               -----
      <---------HSFB2a(2)   <XXXXXXXXXXXXXXXXXXXXMIR1888  <---------YAB1<---------AHL20(2)   <------
 
ttatcgattttagaagaattttggtatttttttcataaattttgatataatcaggtttattttgataaattctataaaaatgacatcaaattttgtttta  10233200
                                                   --------->TOE2(3)
    <---------ICU4                                 ----------->GT1
   --------->ICU4           --------->TOE2(3)     ----------->GT1          <---------AHL20(2)
------->YAB1       --------->YAB1          ----------->GT1                --------->AHL20(2)
------>HAHB4      <---------TOE2(3)        <----------ID1                 <---------AHL20(2)
-------YAB1       <---------YAB1          ----------->GT1            ------->TEIL
------TOE2(3)    <-----------GT1      <---------AHL20(2)          --------->ANAC58        --------->AHL20(2)
---->YAB1       --------->YAB1       --------->AHL20(2)           --------->ANAC58        <---------AHL20(2)
---AHL20(2)  --------->WOX13(1)      <---------AHL20(2)    --------->AHL20(2)            --------->AHL20(2)
 
atgataaaaattagttcaattaacataataaacttaaaaaataaatgggaaaaatgttaaaaaaaaatcacgaatttttaaatttggaacgatttaattt  10233300
                                                                                   ------>ZmHOX2a(2)
                                                                                  --------->GLK1(1)
                                                                                 <---------ARR11(3)
                                                                                 --------->ARR11(3)
                                                           ---------->DOF2   --------->ANAC55(2)
                   --------->ARR11(3)                   --------->AtLEC2     <---------ANAC55(2)
        --------->SPL7 --------->DOF5.7(2)         ----------->HVH21    <---------AHL20(2)
      --------->LBD16------>ZmHOX2a(2)          <---------AHL20(2)  --------->AHL20(2)
     --------->HSFB2a(2)  <---------TOE2(3)    --------->AHL20(2)   <---------AHL20(2)
     <---------HSFB2a(2) <---------DOF5.7(2)   <---------AHL20(2)  --------->AHL20(2)        ------>MYB46(1)
    <---------LBD16<---------ARR11(3)  <----------DOF2<---------ANAC46 --------->AHL20(2)    ------>MYB83
 
tgaattttccggaagacaaatagatcgtaaacgttttgttgactttcgaaataaatgacatgtaaagtcatttatttaatacatgatctccaaaccaaat  10233400
                                                                                       <-----------HVH21
                      <---------ARR11(3)                                              ----------->GT1
       --------->CCA1(2)                                                              <----------ID1
      --------->ARR14(2)             <----------DOF2                                *TSS--------->WRKY18(1)
      <---------ARR14(2)          ------->TEIL  ------->TEIL             ------>ZmHOX2a(1)
   --------->YAB1------------>CBF<---------CCA1(2)           <----------DOF2  --------->At4g35610
 
gggccatcatatatgggccttacaataacttaaaatgtatctttgaagatgaacttaaatgagtctttctctattcctctcagcataagaggtcaaacaa  10233500
                                  <-----------HVH21
                                 --------->ANAC46
                               --------->ANAC46                                      --------->ANAC55(2)
                              <---------LBD16                                        ----------->GT1
                             >>>>>>>>>>E2Fc                                         <---------TOE2(3)
                             >>>>>>>>>>E2Fe                                        <-----------RAV1(2)
                       <---------AHL20(2)                                       --------->ARR14(2)
                      <---------AHL20(2)                                        <---------ARR14(2)
                      <---------AHL20(1)              --------->ORA47(1)      --------->LBD16
                      --------->AHL20(1)              ------>NtERF2         <---------LBD16
                      --------->AHL20(2)              --------->ABI4(1)     <------NtERF2
                     --------->AHL20(2)              --------->DEAR3(1)    ------>NtERF2
                  --------->ICU4--------->LBD16     --------->DEAR3(2)     --------->LBD16
              ----------->GT1>>>>>>>>>>E2Fd       <---------ALFIN1        --------->ANAC46
            <---------LBD16  >>>>>>>>>>E2Fa       --------->ANAC46       <---------LBD16       <----
      --------------->AGL15  >>>>>>>>>>E2Fb     <---------ALFIN1      --------->ARR14(2)       <----
     ----------------->AGL1  >>>>>>>>>>E2Ff     --------->AtMYB61     <---------ARR14(2)    <-------
 
aaacattttcgattttggggaaaaattaattttcccgcgtcaaatgagagaccacaccgcccaaaaaatccagtatcccgccggattcaggtaataaact  10233600
                                                                                                 ---
                                                                                                <---
                                                                                               -----
                                                                                               <----
                                                                                               -----
                                           ------>NtERF2                                       <----
                                           <---------At4g35610                                 <----
                                          --------->RAP2.3(2)                                  -----
                                          --------->DEAR3(1)                                  <-----
                                         --------->RAP2.3(1)                                --------
      --------->DREB2C(2)               <---------ATERF1(1)                               ==========
      <---------ATERF1(2)               --------->LBD16                                   ==========
      --------->DEAR3(1)                ------>NtERF2                                     ------>ZmHOX2a(1)
      --------->ATERF1(2)       --------->ARR11(3)                                        ==========
     <---------LBD16            <---------ARR11(3)                                        ==========
   <---------ALFIN1             <-----------ARR10                <---------ANAC58      --------->HSFB2a(1)
------DOF2           --------->TOE1(3) --------->ANAC46          <---------ANAC58      <---------HSFB2a(1)
-----DAG2            --------->TOE2(3) --------->DEAR3(1)--------->TOE2(3)            <---------ARR14(2)
----GT1--------->LBD16         <---------CCA1(2)    <----------DOF2                   --------->ARR14(2)
 
ttttctccaccggcaaatatcaaaccataaactcatatctctccgccgcttctctctttacctcgattgcttcagagactctccgatggaatcctccaga  10233700
   ------>ZmHOX2a(2)
   <-------TEIL
  <------ZmHOX2a(2)
 --------->AGP1
 <---------ARR11(3)
 <---------ARR14(2)
 <---------AGP1
 --------->ARR14(2)
--->ZmHOX2a(2)
---ZmHOX2a(2)
---->ARR11(3)
-----ARR14(2)
---->ARR14(2)
-----ARR11(3)
-----AGP1                                                                                      <----
---->AGP1                                             <-----------GT1                         <-----
----CCA1(2)                                        --------->MYB52(2)                         ------
->HSFB2a(2)                              --------->GLK1(1)                        <---------ARR14(2)
====HOX2a_HOX2a    --------->TOE2(1)    <---------ARR14(2)                        --------->ARR14(2)
=========HOX2a_HOX2a               --------->MYB52(1) <---------AHL20(2)          <---------ARR11(3)
==========HOX2a_HOX2a        --------->ZAT14  <---------TOE2(3)                  <---------GLK1(1)
===HOX2a_HOX2a     --------->TOE1(1)    --------->ARR14(2)                       <---------CCA1(2)
 
tctagatccgtcttcgtcaacatcggactcagagaactcaacggatttcgaggttatttacatacaaattccttcttctactgtatatctgagtttcagc  10233800
                                                                                                   <
                                                                                                   -
                                                                                                  --
                                                                                                  <-
                                                                                                 <--
                                                                                                <---
                                                                                                <---
                                           --------->ANAC58                                     <---
          --------->TOE2(3)                --------->ANAC58                                    <----
        <---------YAB1                     <---------ANAC55(2)                                <-----
       --------->KAN4(2)                  --------->SPL1(2)                                  -------
      <---------KAN4(1)         <---------TOE1(2)                           --------->ARR14(2)------
      --------->KAN4(1)         <---------TOE2(2)                       <---------ZAT2       -------
     <---------KAN4(2)        <---------ANAC58                          --------->ZAT2       <------
<---------LBD16               <---------ANAC58                          <---------At4g35610  <------
-----GLK1(2)               <-----------GT1--------->SPL7                --------->At4g35610 --------
----At4g35610        <----------DOF2    <---------SPL7 <---------MYB52(1)   <---------ARR14(2)------
--->At4g35610        <---------DAG2   <---------------AtSPL3    <---------ATERF1(1)         <-------
 
ttcttcggattattcttaatcgaacttttttttccttggtttcagtacggaagagaccgttcttcgcagactccgagctgatttgcagagaaatcgccgg  10233900
    --------->ALFIN1
   --------->LBD16
  <---------ANAC46
---------ARR14(2)
-------->ARR14(2)
------->ATERF1(1)
-----NtERF2
-------SPL7                                <---------ANAC46
------ANAC58                               <---------ANAC58
------ANAC58                       <---------MYB46(3)
------ANAC46                      --------->WRKY38(1)
--NtERF2                         <---------MYB52(1)
----ATERF1(1)                   <-------GAMYB
-->DEAR3(1)                    <---------MYB46(3)                                                  <
--->LBD16                    --------->LBD16                                                      --
-->ATERF1(2)                 ------>NtERF2 <---------ANAC58                                       --
---DEAR3(1)                 --------->ANAC46        <---------TOE2(3)        <---------MYB52(1)   <-
---ATERF1(2)              <---------ATERF1(1)<---------MYB52(1)             <-------GAMYB   ------->TEIL
->ATERF1(1)       --------->ARR14(2)  <----------DOF2             --------->GLK1(2)  ---------------
>NtERF2           <---------ARR14(2)  <---------MYB46(3)         <---------GLK1(2)   <--------------
--LBD16    --------->ANAC46 --------->DEAR3(1)      --------->MYB59        <-----------RAV1(1)    <-
 
cgtagccgtggaacacgacgggatttggactccgccgttggctgtttcgttttgtaaggtatagtccaaattctggttctgttgattactcaatgtagct  10234000
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AGI:  At3g27640.1   
Description:  transducin family protein / WD-40 repeat family protein. similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT2G43770.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14712.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680)
Range:  from: 10233485    to: 10236858    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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