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AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                                                  --
                                                                                                  --
                                                                                                  --
                                                                                                 <--
                                                                                               <----
                                                                                         --------->ARR14(2)
                                                                                         --------->ARR11(3)
                                                                                         <---------ARR14(2)
                                                     <---------MYB52(1)                  <---------ARR11(3)
                                           --------->ANAC58                         ----------->RAV1(1)
        <---------ATERF1(1)        <-----------HVH21<-----------HVH21<-------TEIL  --------->MYB46(3)
--->GAMYB--------->ATERF1(1) ------->TEIL  --------->ANAC58 --------->WOX13(1)<-------MYC3 ------>ZmHOX2a(2)
-->MYB52(1)                 <---------CCA1(2)       <-------GAMYB  --------->YAB1 ------->TEIL<-----
--WRKY38(1)          --------->REM1(1)     --------->ANAC46<-------TEIL       ------->MYC3<------ZmHOX2a(2)
 
ggtgtaatcgtcgtctccgatgcttcatcttgaatctttgtcaaacaagcaagtccgttacatccatcaatgttcatagcacatgaaccacagatccctt  10133600
          --------->ANAC58
          --------->ANAC46
          --------->ANAC58
         <---------LBD16
       ------>ZmHOX2a(2)           <---------ANAC58
     --------->ARR11(3)            <---------ANAC58
     <---------ARR11(3)      ------>ZmHOX2a(2)                                                  <---
------->ANAC58               <-------TEIL           ---------->DOF2                          ------>ZmHOX2a(2)
------->ANAC46             <---------ARR14(2)      --------->YAB1                          ---------
------->ANAC58             ------->TEIL    --------->ARR11(3)                              <--------
-------LBD16               --------->ARR14(2)--------->YAB1                                <--------
-----REM1(2)          --------->CCA1(2)    <---------ARR11(3)                 --------->GLK1(2)-----
------HVH21  ---------->DOF2<------ZmHOX2a(2)------>ZmHOX2a(2)   <---------YAB1         <------ZmHOX2a(2)
 
cacggcatgatctacggaaagtaagagatggatccatttcgtttttgatcttaatcaaagcatctaataccattggaccacaatctttgagatcgatctg  10133700
                                                                                  <-----------RAV1(2)
                                                                                 <------NtERF2
                                                                                ------>NtERF2
                                                                                ----------->RAV1(1)
                                                                                <-----------HVH21
                                                                               --------->DEAR3(1)
                                                                               --------->ATERF1(2)
                                                                               <---------ATERF1(2)
                                                                               --------->ANAC46
                                                                               --------->RRTF1(2)
                                                                               --------->RAP2.3(3)
                                                                               --------->RRTF1(3)
                                                                               --------->DREB2C(2)
                                                                               --------->RAP2.6(2)
                                                                               --------->RAP2.3(2)
                                                                              --------->ERF1
                                                                              --------->ATERF1(1)
                                                                              --------->RAP2.6(1)
                                                                              --------->RAP2.3(1)
                                                                              --------->ORA47(2)
                                                                              --------->RRTF1(1)
                                                                             <---------RAP2.3(1)
                                                                             --------->LBD16
                                                   ---------->DOF2           --------->At4g35610
                                               ------>ZmHOX2a(2)             <---------At4g35610
                            <---------LBD16    ===============================HOX2a_HOX2a
                          --------->GLK1(2)   ================================HOX2a_HOX2a
                       <---------GLK1(2)      --------->CCA1(2)              <---------ATERF1(1)
                    --------->LBD16           <------ZmHOX2a(2)              ------>NtERF2        --
--------->ICU4     --------->LBD16           <---------AGP1                 --------->ANAC46      <-
------MYB52(1)     <---------LBD16           --------->ARR11(3)        ------>ZmHOX2a(1)    <-------
>ARR14(2)         <---------ANAC46           <---------ARR14(2)     ==========================HOX2a_HOX2a
-AGP1   --------->ARR11(3)--------->ARR11(3) <---------ARR11(3)     <------ZmHOX2a(2)     --------->HSFC1(2)
-ARR14(2)     <---------ANAC58               --------->AGP1        <---------ARR14(2)     <---------HSFC1(2)
------>GT1    <---------ANAC58               --------->ARR14(2)    --------->ARR14(2)  <------ZmHOX2a(1)
 
gtaattttgaagctctggcttccctggattatctggattccatcgatagatctgaaaagtcttcaagttcgatcctcttccgccgccagaggaagctttt  10133800
                                                  --------->LBD16
                                                 <---------ANAC46
                                                 <---------TGA1a
                                                 =====================================MYC_MYB
                                                 --------->TGA1a
                                                 --------->DEAR3(1)
                                                 --------->O2
                                                 <---------O2
                                                --------->ATERF1(1)
                                                <------NtERF2
                                               ------>NtERF2                      <---------ATHB12
                                              --------->RRTF1(3)                 ------>MYB83
        --------->At4g35610                   --------->DEAR3(1)                 ------>MYB46(1)
        <---------At4g35610                   --------->RAP2.3(3)             <---------MYB55(2)
     ------>NtERF2                            --------->RAP2.3(2)             <---------ATHB12
    <---------ALFIN1                         --------->ATERF1(1)              --------->MYB46(3)
    --------->DEAR3(1)                       --------->DEAR4(2)              ------>MYB83
   --------->ATERF1(1)                       --------->ERF1                  --------->ANAC46
  --------->LBD16                           <---------ATERF1(1)              ------>MYB46(1)
  <---------ATERF1(1)                      <---------DEAR3(1)                -------->P
  ------>NtERF2                            --------->ANAC46           <---------ANAC58
 --------->ANAC46                <------NtERF2<---------DEAR3(1)      <---------ANAC58
<---------LBD16                 --------->LBD16--------->ABI4(1)   <---------ARR14(2)
------->ARR14(2)      <-------TEIL    <-----------GT1              --------->ARR14(2)              -
----------GT1------>ZmHOX2a(1) --------->LBD16--------->ANAC46   <---------MYB46(3)       <------ZmHOX2a(2)
---DOF2<---------ALFIN1       <---------LBD16--------->RAP2.3(1) <---------DEAR3(2)       ==========
 
gtttccgcctccgctcctgtagaggtccatctcgccggaattaacctcgccgccgtggctaatttcgacggtttcgttccaaccaatcttccgatcaaac  10133900
                                                                                   <---------YAB1
                                                                                 --------->YAB1
                                                                                --------->AHL20(2)
                                                                                <---------AHL20(2)
                                                                             --------->AHL20(2)
                                                                             <---------AHL20(2)
              ------>ZmHOX2a(1)                                             <---------AHL20(2)
       <---------AHL20(2)                                               <---------YAB1
 ------>NtERF2<---------HSFB2a(2)                       <---------AHL20(2)  --------->AHL20(2)
--------->ANAC58                           --------->AHL20(2)          --------->ARR11(3)
--------->ANAC46                           <---------AHL20(2)          <---------ARR11(3)
--------->ANAC58     <---------GLK1(1)    --------->AHL20(2)       <---------At4g35610
--------->RAP2.6(2)  --------->GLK1(1) <---------AHL20(2)        <---------HSFB2a(2)   --------->ARR11(3)
-------->SPL7 <---------LBD16          --------->AHL20(2)        --------->HSFB2a(2)--------->YAB1 -
=====================HOX2a_HOX2a----------->GT1         --------->AHL20(2)  <---------AHL20(1)  *TSS
 
cagacgccatttttttcctcggagaaatctgaaaatggctaaaaaattaattcaagtatttatatttttcagaagataattaatttataataacttgaaa  10134000
                                                               --------->ANAC55(2)
                                                               <---------ANAC55(2)
                                                               <---------ANAC46
                                                               --------->O2
                                                               <---------ANAC55(1)
         <---------TOE2(3)                                     <---------O2
         <-----------------AG       <---------AHL20(2)         <---------ANAC58
         <-----------------AGL1    <-----------TBP             --------->TGA1a
        <-----------GT1            --------->AHL20(2)          <---------ANAC58
     <------------CBF            <---------AHL20(2)            <---------TGA1a                 <----
  <---------RAP2.6(3)          --------->AHL20(2)             <-------TEIL         --------->ALFIN1
 --------->RAP2.6(2)           <---------AHL20(2)     <---------YAB1    <---------ARR14(2) <--------
-------->At4g35610       --------->AHL20(2)    <-----------RAV1(2)      --------->ARR14(2) <--------
 
ttagccgaaattgacgatttagggaatataaaatataaatttatagagacacaggggattatagctacgtgtgcatatttgtaaatgtgaggcttaggtt  10134100
                                                                                                 <<<
                                                                                                ----
                                             -------->ATHB1                                     ----
                              --------->ANAC58                    <---------ARR14(2)      <---------ANAC46
                              --------->ANAC58            --------->MYB52(2)              <---------ANAC58
                              <---------ANAC55(2)         <---------MYB46(3) <---------TOE1(3)  ----
                              --------->ANAC55(2)        --------->SPL7 ------>MYB83 --------->YAB1<
                --------->WRKY12             <---------ICU4    <---------TOE1(3)  --------->WOX13(1)
                --------->WRKY38(1)          --------->ATHB12  <---------TOE2(3) <---------WRKY12>>>
               <---------MYB52(1)            --------->YAB1<-------GAMYB------>MYB46(1)   <---------ANAC58
  <---------ANAC46  ------>ZmHOX2a(2)       <---------ATHB12<---------MYB52(1)  --------->WRKY18(1)-
---TEIL       <-------GAMYB   --------->ANAC55(1)       <---------MYB52(1)   <---------TOE2(3)<-----
-TOE2(3)     <---------ANAC46 --------->ANAC46     <-----------GT1--------->ARR14(2)<---------ATHB12
-TOE1(2)    <-----------------------TaNAC69(2)    ----------->HVH21  --------->DEAR3(2)  <------NtERF2
 
catctacgtataagtgccgttgatcgtttgaacacgtaatgttctgaatcattgtgaccgttcgttatggataccgacttaaggtcaatcgtggcgaaca  10134200
                                              ------->MYC2
                                              <-------MYC4
                                              <-------PIF5
                                              ------->MYC4
                                              ------->PIF5
                                              ------->MYC3
                            <---------HSFB2a(2)
                            --------->HSFB2a(2)           <------MYB46(1)
                   ------->MYC3               <-------MYC2<---------MYB46(3)
                   <-------MYC2              <---------TGA1a  <------MYB46(1)
                   ------->PIF5              --------->ANAC55(2) <---------RVE1(1)
                   <-------MYC3              --------->TGA1a<--------P
                   ------->MYC2              --------->O2<---------AtMYB61
                   <-------PIF5              <---------O2--------->MYB59
                  <---------ANAC58           --------->ANAC46 <------MYB83                         <
      <---------CCA1(1)     <---------HSFC1(1)-------->ABF1<-------GAMYB                           <
     <---------ARR11(3)     --------->HSFC1(1)<-------MYC3<------MYB83                            <-
<<<<<<<<<<<<<<LFY <---------ANAC46           ========================MYC_MYB                 -------
----->ANAC58      <---------ANAC58           =================bZIP_DOF                       <------
----->ANAC58      <------NtERF2              ======================MYC_MYB                   -------
----->ANAC46    <---------ANAC46    ----------->GT1<----------DOF2                --------->ARR11(3)
---------ALFIN1 <---------ANAC58  ----------->GT1 <---------ANAC46             <------ZmHOX2a(1)  <-
>>>>>>>>>>>>>>LFY------>NtERF2   --------->DAG2   <---------ANAC58     <-----------GT1       <------
-------->AtMYB61<---------ANAC58---------->DOF2   <---------ANAC58   <---------AHL20(2)    ---------
----ALFIN1   --------->ANAC46   =======================bZIP_DOF  <---------CCA1(1)<---------ARR11(3)
 
caccactggatatttcaaggcgcgtggtcttctcgaaaagtgtaatacacgtggctttgtttggttggatattttaacttgaggagaacttgagaagaac  10134300
        <------MYB46(1)
       --------->MYB59
       <---------MYB46(3)                              <----------DOF2
       --------->MYB46(2)                              <---------------AGL15
      <---------MYB55(1)                               --------------->AGL15
     <---------MYB52(1)                 <---------YAB1<-----------------AGL3
---------SPL7                   --------->ZAT14       ----------------->AGL2            ----------->GT1
-----------HVH21                <---------ZAT14       <-----------------AG      <---------ARR14(2)
--------ANAC58                  --------->ZAT18       <-----------------AGL2    --------->ARR11(3)
-->ARR11(3)                     <---------ZAT18     --------->ICU4              <---------ARR11(3)
---ARR11(3)               --------->ANAC58     --------->YAB1                   --------->ARR14(2)
-->ARR14(2)               --------->ANAC46 --------->ICU4                      <---------CCA1(2)
--------ANAC58            <---------ANAC55(2) <---------YAB1                  <---------ARR11(3)
---ARR14(2)               --------->ANAC55(2) <---------TOE2(3)               <---------AHL20(1)
-->ARR10<------MYB83      --------->ANAC58 <---------YAB1    <---------TOE2(3)--------->AHL20(1)
 
tgcgtcccgtttggtaagagaagagaaacacgtagtgcagtttgtgattatggtaatgctttttatggaaagtttcaccaatatatctgcgaagttaaaa  10134400
                  <---------ICU4
               <---------ANAC55(2)                  ----------->RAV1(1)
               --------->ANAC55(2)                 --------->MYB46(3)
             <-----------GT1 --------->ANAC55(2)  ------>MYB46(1)                               ----
          <---------ICU4     <---------ANAC58     ------>MYB83                                <-----
       --------->ATHB12      <---------ANAC58    ----------->RAV1(1)        --------->ANAC46  ------
       --------->YAB1  <---------YAB1           ------->GAMYB  <---------At4g35610        <---------ZAT14
       <---------ICU4--------->YAB1            --------->MYB46(3)    <-------TEIL         --------->ZAT14
      <---------YAB1--------->ICU4         XXXXXXXXXXXXXXXXXXXX>MIR827--------->YAB1 <-------TEIL
 
atagtttttatcattgttacataatgatgtttacttgatagtatttgataaccaacaacaaaattgagcagtttcataaacgaaaacatacactgttcta  10134500
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AGI:  At3g27380.1   
Description:  SDH2-1 (succinate dehydrogenase 2-1). Identical to Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial precursor (SDH2-1) [Arabidopsis Thaliana] (GB:Q8LBZ7;GB:Q9G3M0;GB:Q9LTZ2); similar to SDH2-2 (succinate dehydrogenase 2-2) [Arabidopsis thaliana] (TAIR:AT5G40650.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14639.1); contains InterPro domain 2Fe-2S ferredoxin, iron-sulphur binding site; (InterPro:IPR006058); contains InterPro domain 4Fe-4S ferredoxin, iron-sulphur binding; (InterPro:IPR001450); contains InterPro domain Alpha-helical ferredoxin; (InterPro:IPR009051); contains InterPro domain Beta-grasp
Range:  from: 10130847    to: 10133997    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At3g27390.1   
Description:  Identical to Uncharacterized membrane protein At3g27390 [Arabidopsis Thaliana] (GB:Q8GUM4;GB:Q9LTZ1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G40640.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14643.1)
Range:  from: 10134433    to: 10137867    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
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