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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--
--
--
<--
<----
--------->
ARR14(2)
--------->
ARR11(3)
<---------
ARR14(2)
<---------
MYB52(1)
<---------
ARR11(3)
--------->
ANAC58
----------->
RAV1(1)
<---------
ATERF1(1)
<-----------
HVH21
<-----------
HVH21
<-------
TEIL
--------->
MYB46(3)
--->
GAMYB
--------->
ATERF1(1)
------->
TEIL
--------->
ANAC58
--------->
WOX13(1)
<-------
MYC3
------>
ZmHOX2a(2)
-->
MYB52(1)
<---------
CCA1(2)
<-------
GAMYB
--------->
YAB1
------->
TEIL
<-----
--
WRKY38(1)
--------->
REM1(1)
--------->
ANAC46
<-------
TEIL
------->
MYC3
<------
ZmHOX2a(2)
ggtgtaatcgtcgtctccgatgcttcatcttgaatctttgtcaaacaagcaagtccgttacatccatcaatgttcatagcacatgaaccacagatccctt
10133600
--------->
ANAC58
--------->
ANAC46
--------->
ANAC58
<---------
LBD16
------>
ZmHOX2a(2)
<---------
ANAC58
--------->
ARR11(3)
<---------
ANAC58
<---------
ARR11(3)
------>
ZmHOX2a(2)
<---
------->
ANAC58
<-------
TEIL
---------->
DOF2
------>
ZmHOX2a(2)
------->
ANAC46
<---------
ARR14(2)
--------->
YAB1
---------
------->
ANAC58
------->
TEIL
--------->
ARR11(3)
<--------
-------
LBD16
--------->
ARR14(2)
--------->
YAB1
<--------
-----
REM1(2)
--------->
CCA1(2)
<---------
ARR11(3)
--------->
GLK1(2)
-----
------
HVH21
---------->
DOF2
<------
ZmHOX2a(2)
------>
ZmHOX2a(2)
<---------
YAB1
<------
ZmHOX2a(2)
cacggcatgatctacggaaagtaagagatggatccatttcgtttttgatcttaatcaaagcatctaataccattggaccacaatctttgagatcgatctg
10133700
<-----------
RAV1(2)
<------
NtERF2
------>
NtERF2
----------->
RAV1(1)
<-----------
HVH21
--------->
DEAR3(1)
--------->
ATERF1(2)
<---------
ATERF1(2)
--------->
ANAC46
--------->
RRTF1(2)
--------->
RAP2.3(3)
--------->
RRTF1(3)
--------->
DREB2C(2)
--------->
RAP2.6(2)
--------->
RAP2.3(2)
--------->
ERF1
--------->
ATERF1(1)
--------->
RAP2.6(1)
--------->
RAP2.3(1)
--------->
ORA47(2)
--------->
RRTF1(1)
<---------
RAP2.3(1)
--------->
LBD16
---------->
DOF2
--------->
At4g35610
------>
ZmHOX2a(2)
<---------
At4g35610
<---------
LBD16
===============================
HOX2a_HOX2a
--------->
GLK1(2)
================================
HOX2a_HOX2a
<---------
GLK1(2)
--------->
CCA1(2)
<---------
ATERF1(1)
--------->
LBD16
<------
ZmHOX2a(2)
------>
NtERF2
--
--------->
ICU4
--------->
LBD16
<---------
AGP1
--------->
ANAC46
<-
------
MYB52(1)
<---------
LBD16
--------->
ARR11(3)
------>
ZmHOX2a(1)
<-------
>
ARR14(2)
<---------
ANAC46
<---------
ARR14(2)
==========================
HOX2a_HOX2a
-
AGP1
--------->
ARR11(3)
--------->
ARR11(3)
<---------
ARR11(3)
<------
ZmHOX2a(2)
--------->
HSFC1(2)
-
ARR14(2)
<---------
ANAC58
--------->
AGP1
<---------
ARR14(2)
<---------
HSFC1(2)
------>
GT1
<---------
ANAC58
--------->
ARR14(2)
--------->
ARR14(2)
<------
ZmHOX2a(1)
gtaattttgaagctctggcttccctggattatctggattccatcgatagatctgaaaagtcttcaagttcgatcctcttccgccgccagaggaagctttt
10133800
--------->
LBD16
<---------
ANAC46
<---------
TGA1a
=====================================
MYC_MYB
--------->
TGA1a
--------->
DEAR3(1)
--------->
O2
<---------
O2
--------->
ATERF1(1)
<------
NtERF2
------>
NtERF2
<---------
ATHB12
--------->
RRTF1(3)
------>
MYB83
--------->
At4g35610
--------->
DEAR3(1)
------>
MYB46(1)
<---------
At4g35610
--------->
RAP2.3(3)
<---------
MYB55(2)
------>
NtERF2
--------->
RAP2.3(2)
<---------
ATHB12
<---------
ALFIN1
--------->
ATERF1(1)
--------->
MYB46(3)
--------->
DEAR3(1)
--------->
DEAR4(2)
------>
MYB83
--------->
ATERF1(1)
--------->
ERF1
--------->
ANAC46
--------->
LBD16
<---------
ATERF1(1)
------>
MYB46(1)
<---------
ATERF1(1)
<---------
DEAR3(1)
-------->
P
------>
NtERF2
--------->
ANAC46
<---------
ANAC58
--------->
ANAC46
<------
NtERF2
<---------
DEAR3(1)
<---------
ANAC58
<---------
LBD16
--------->
LBD16
--------->
ABI4(1)
<---------
ARR14(2)
------->
ARR14(2)
<-------
TEIL
<-----------
GT1
--------->
ARR14(2)
-
----------
GT1
------>
ZmHOX2a(1)
--------->
LBD16
--------->
ANAC46
<---------
MYB46(3)
<------
ZmHOX2a(2)
---
DOF2
<---------
ALFIN1
<---------
LBD16
--------->
RAP2.3(1)
<---------
DEAR3(2)
==========
gtttccgcctccgctcctgtagaggtccatctcgccggaattaacctcgccgccgtggctaatttcgacggtttcgttccaaccaatcttccgatcaaac
10133900
<---------
YAB1
--------->
YAB1
--------->
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
------>
ZmHOX2a(1)
<---------
AHL20(2)
<---------
AHL20(2)
<---------
YAB1
------>
NtERF2
<---------
HSFB2a(2)
<---------
AHL20(2)
--------->
AHL20(2)
--------->
ANAC58
--------->
AHL20(2)
--------->
ARR11(3)
--------->
ANAC46
<---------
AHL20(2)
<---------
ARR11(3)
--------->
ANAC58
<---------
GLK1(1)
--------->
AHL20(2)
<---------
At4g35610
--------->
RAP2.6(2)
--------->
GLK1(1)
<---------
AHL20(2)
<---------
HSFB2a(2)
--------->
ARR11(3)
-------->
SPL7
<---------
LBD16
--------->
AHL20(2)
--------->
HSFB2a(2)
--------->
YAB1
-
=====================
HOX2a_HOX2a
----------->
GT1
--------->
AHL20(2)
<---------
AHL20(1)
*
TSS
cagacgccat
ttttttcctcggagaaatctgaaaatggctaaaaaattaattcaagtatttatatttttcagaagataattaatttataataacttg
aaa
10134000
--------->
ANAC55(2)
<---------
ANAC55(2)
<---------
ANAC46
--------->
O2
<---------
ANAC55(1)
<---------
TOE2(3)
<---------
O2
<-----------------
AG
<---------
AHL20(2)
<---------
ANAC58
<-----------------
AGL1
<-----------
TBP
--------->
TGA1a
<-----------
GT1
--------->
AHL20(2)
<---------
ANAC58
<------------
CBF
<---------
AHL20(2)
<---------
TGA1a
<----
<---------
RAP2.6(3)
--------->
AHL20(2)
<-------
TEIL
--------->
ALFIN1
--------->
RAP2.6(2)
<---------
AHL20(2)
<---------
YAB1
<---------
ARR14(2)
<--------
-------->
At4g35610
--------->
AHL20(2)
<-----------
RAV1(2)
--------->
ARR14(2)
<--------
ttagccgaaattgacgatttagggaatataaaatataaatttatagagacacaggggattatagctacgtgtgcatatttgtaaatgtgaggcttaggtt
10134100
<<<
----
-------->
ATHB1
----
--------->
ANAC58
<---------
ARR14(2)
<---------
ANAC46
--------->
ANAC58
--------->
MYB52(2)
<---------
ANAC58
<---------
ANAC55(2)
<---------
MYB46(3)
<---------
TOE1(3)
----
--------->
ANAC55(2)
--------->
SPL7
------>
MYB83
--------->
YAB1
<
--------->
WRKY12
<---------
ICU4
<---------
TOE1(3)
--------->
WOX13(1)
--------->
WRKY38(1)
--------->
ATHB12
<---------
TOE2(3)
<---------
WRKY12
>>>
<---------
MYB52(1)
--------->
YAB1
<-------
GAMYB
------>
MYB46(1)
<---------
ANAC58
<---------
ANAC46
------>
ZmHOX2a(2)
<---------
ATHB12
<---------
MYB52(1)
--------->
WRKY18(1)
-
---
TEIL
<-------
GAMYB
--------->
ANAC55(1)
<---------
MYB52(1)
<---------
TOE2(3)
<-----
-
TOE2(3)
<---------
ANAC46
--------->
ANAC46
<-----------
GT1
--------->
ARR14(2)
<---------
ATHB12
-
TOE1(2)
<-----------------------
TaNAC69(2)
----------->
HVH21
--------->
DEAR3(2)
<------
NtERF2
catctacgtataagtgccgttgatcgtttgaacacgtaatgttctgaatcattgtgaccgttcgttatggataccgacttaaggtcaatcgtggcgaaca
10134200
------->
MYC2
<-------
MYC4
<-------
PIF5
------->
MYC4
------->
PIF5
------->
MYC3
<---------
HSFB2a(2)
--------->
HSFB2a(2)
<------
MYB46(1)
------->
MYC3
<-------
MYC2
<---------
MYB46(3)
<-------
MYC2
<---------
TGA1a
<------
MYB46(1)
------->
PIF5
--------->
ANAC55(2)
<---------
RVE1(1)
<-------
MYC3
--------->
TGA1a
<--------
P
------->
MYC2
--------->
O2
<---------
AtMYB61
<-------
PIF5
<---------
O2
--------->
MYB59
<---------
ANAC58
--------->
ANAC46
<------
MYB83
<
<---------
CCA1(1)
<---------
HSFC1(1)
-------->
ABF1
<-------
GAMYB
<
<---------
ARR11(3)
--------->
HSFC1(1)
<-------
MYC3
<------
MYB83
<-
<<<<<<<<<<<<<<
LFY
<---------
ANAC46
========================
MYC_MYB
-------
----->
ANAC58
<---------
ANAC58
=================
bZIP_DOF
<------
----->
ANAC58
<------
NtERF2
======================
MYC_MYB
-------
----->
ANAC46
<---------
ANAC46
----------->
GT1
<----------
DOF2
--------->
ARR11(3)
---------
ALFIN1
<---------
ANAC58
----------->
GT1
<---------
ANAC46
<------
ZmHOX2a(1)
<-
>>>>>>>>>>>>>>
LFY
------>
NtERF2
--------->
DAG2
<---------
ANAC58
<-----------
GT1
<------
-------->
AtMYB61
<---------
ANAC58
---------->
DOF2
<---------
ANAC58
<---------
AHL20(2)
---------
----
ALFIN1
--------->
ANAC46
=======================
bZIP_DOF
<---------
CCA1(1)
<---------
ARR11(3)
caccactggatatttcaaggcgcgtggtcttctcgaaaagtgtaatacacgtggctttgtttggttggatattttaacttgaggagaacttgagaagaac
10134300
<------
MYB46(1)
--------->
MYB59
<---------
MYB46(3)
<----------
DOF2
--------->
MYB46(2)
<---------------
AGL15
<---------
MYB55(1)
--------------->
AGL15
<---------
MYB52(1)
<---------
YAB1
<-----------------
AGL3
---------
SPL7
--------->
ZAT14
----------------->
AGL2
----------->
GT1
-----------
HVH21
<---------
ZAT14
<-----------------
AG
<---------
ARR14(2)
--------
ANAC58
--------->
ZAT18
<-----------------
AGL2
--------->
ARR11(3)
-->
ARR11(3)
<---------
ZAT18
--------->
ICU4
<---------
ARR11(3)
---
ARR11(3)
--------->
ANAC58
--------->
YAB1
--------->
ARR14(2)
-->
ARR14(2)
--------->
ANAC46
--------->
ICU4
<---------
CCA1(2)
--------
ANAC58
<---------
ANAC55(2)
<---------
YAB1
<---------
ARR11(3)
---
ARR14(2)
--------->
ANAC55(2)
<---------
TOE2(3)
<---------
AHL20(1)
-->
ARR10
<------
MYB83
--------->
ANAC58
<---------
YAB1
<---------
TOE2(3)
--------->
AHL20(1)
tgcgtcccgtttggtaagagaagagaaacacgtagtgcagtttgtgattatggtaatgctttttatggaaagtttcaccaatatatctgcgaagttaaaa
10134400
<---------
ICU4
<---------
ANAC55(2)
----------->
RAV1(1)
--------->
ANAC55(2)
--------->
MYB46(3)
<-----------
GT1
--------->
ANAC55(2)
------>
MYB46(1)
----
<---------
ICU4
<---------
ANAC58
------>
MYB83
<-----
--------->
ATHB12
<---------
ANAC58
----------->
RAV1(1)
--------->
ANAC46
------
--------->
YAB1
<---------
YAB1
------->
GAMYB
<---------
At4g35610
<---------
ZAT14
<---------
ICU4
--------->
YAB1
--------->
MYB46(3)
<-------
TEIL
--------->
ZAT14
<---------
YAB1
--------->
ICU4
XXXXXXXXXXXXXXXXXXXX>
MIR827
--------->
YAB1
<-------
TEIL
atagtttttatcattgttacataatgatgttt
acttgatagtatttgataaccaacaacaaaattgagcagtttcataaacgaaaacatacactgttcta
10134500
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AGI:
At3g27380.1
Description:
SDH2-1 (succinate dehydrogenase 2-1). Identical to Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial precursor (SDH2-1) [Arabidopsis Thaliana] (GB:Q8LBZ7;GB:Q9G3M0;GB:Q9LTZ2); similar to SDH2-2 (succinate dehydrogenase 2-2) [Arabidopsis thaliana] (TAIR:AT5G40650.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14639.1); contains InterPro domain 2Fe-2S ferredoxin, iron-sulphur binding site; (InterPro:IPR006058); contains InterPro domain 4Fe-4S ferredoxin, iron-sulphur binding; (InterPro:IPR001450); contains InterPro domain Alpha-helical ferredoxin; (InterPro:IPR009051); contains InterPro domain Beta-grasp
Range:
from: 10130847
to: 10133997
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At3g27390.1
Description:
Identical to Uncharacterized membrane protein At3g27390 [Arabidopsis Thaliana] (GB:Q8GUM4;GB:Q9LTZ1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G40640.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14643.1)
Range:
from: 10134433
to: 10137867
Orientation: Reverse
Links:
TAIR
MIPS
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