Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100        --------->ANAC46      --------->ANAC58      --------->ANAC58     --------->SPL7   <---------SPL7                       <---------ALFIN1                    --------->YAB1 --------------->AtSPL3            --------->ANAC58                   --------->ANAC58             <- --------------->AtSPL8            --------->ANAC46              --------->ZAT18                 ---- <---------------AtSPL3            --------->ANAC58              <---------ZAT18                 ---- ---------ANAC46                --------->TOE2(2)               <---------ANAC58                ----- --------ZAT2             --------->ANAC58     <---------At4g35610    --------->ANAC58          <---- ---->LBD16               --------->ANAC58     --------->At4g35610    --------->ANAC46         ------ --->ANAC46               --------->ANAC46--------->ANAC46      <---------ANAC58<---------At5g28300-- --------------->TaNAC69(2)     --------->TOE1(2)          <---------MYB52(1)  --------->YAB1  <-----   tagctcgtacgccatctctattcattctacgaaacatacgaaacacctcatcagagacaccgttttgcgcacaagcagtaatcacagcgttccaagaccc  9747500                               <---------ANAC58      <-----------HVH21   <---------At4g35610 --------ALFIN1           --------->At4g35610                  --------->ANAC58                     - -->MYB83          <---------HSFB2a(2)                   <---------At5g28300                       <- -->MYB46(1)       --------->HSFB2a(2)            ----------->RAV1(1)                             <-- ---->ANAC46   --------->ARR14(2)                 <---------ALFIN1                               ---- -----ALFIN1   <---------ARR14(2)            ------->GAMYB --------->YAB1                        ---- --->MYB46(3) --------->GLK1(1)<---------ANAC46 --------->ANAC58                           --------->GLK1(2) ------->AtMYB61   ------>ZmHOX2a(1)        <---------ALFIN1   --------->ANAC58        <------ZmHOX2a(1) ----MYB55(2) <---------GLK1(1)<---------ANAC58 --------->ANAC58  --------->TOE2(3)   ----------->GT1   accatctcgttcaggcatttcctcgaacagctctcgtgcatcatcaacacacccacatttaccataagcctcaatggctctgttcaagaggaaaatcgga  9747600                                        <---------ANAC58              --------->MYB52(1)         ---------->DOF2                <---------ANAC58       <------ZmHOX2a(1)   ------->GAMYB                    <---------ANAC58        <---------HSFB2a(2) -------->MYB52(1)                  --------->ANAC55(2)     --------->HSFB2a(2) --------WRKY38(1)                  <---------ANAC58        <---------LBD16                        <- ----NtERF2----------->GT1        --------->MYB52(1)    <----------DOF2     ---------->DOF2        <- ----->ANAC58                   <---------DAG2       <---------ARR11(3) --------->ANAC58           <- ----->ANAC58                   <----------DOF2      --------->ARR11(3) --------->ANAC58        <----   ggcaacggagagaaagttactaagtgagattggactttacgggcttgcacaacaagagctttcgaggaacaagaacggaaaagacgctcgtatagccaat  9747700                                                                                      --------->At5g28300                                                                                <-----------HVH21                                                                             <---------TGA1a                                                                             <---------O2                                                                             <---------ANAC58                                                                             <---------bZIP60(2)                                                                           --------->MYB52(1)                                                                          ----------->HVH21                                                 <---------At5g28300    --------->At4g35610         <         <---------LBD16                        <-----------GT1        --------->ARR14(2)           -   <------------AtMYB77                  --------->HSFB2a(2)           --------->GLK1(2)          <-- --------->MYB52(1)                  ==================================================bZIP_DOF <---- --------MYB52(2)  ---------->DOF2   <----------DOF2      <---------HSFB2a(2)<---------ANAC46   ----- -----------MYB.PH3(2)    <---------ZAT14<---------HSFB2a(2)           <---------ARR14(2)     <------MYB83 --------MYB59  --------->ANAC58 <---------RAP2.6(2)      --------->HSFB2a(2)<---------ANAC58 <------MYB46(1) -----ATHB12    --------->ANAC58--------->RAP2.6(3) ------>NtERF2     <---------GLK1(2)      --------   aactaactggctctggagaagcaaagagaacagagacggctttcgagacattaccgccttcgagatgctcaagaatctgacgggtcactgtaagtttggt  9747800             --------->ANAC58    <------NtERF2   ------>NtERF2   --------->ABI4(2)  --------->ALFIN1                                                 <-----------HVH21 ---------At4g35610                                          <---------HSFC1(2) -------->LBD16                                              <---------HSFB2a(1) -------LBD16--------->ANAC46                    ---------->DOF2  --------->LBD16 -----ARR14(2)             <-----------GT1 <---------RAP2.6(2)  <---------LBD16            ---------- ---->ARR14(2)     <---------ANAC46       --------->RAP2.6(3)--------->HSFC1(2)         --------->TOE2(3) ->MYB59     --------->ANAC58         ---------->DOF2  --------->At4g35610       <-------TEIL<-------   tccggtgccgataacacgcttgtgggttttatcttgtttgaaaagacggccaaaagcagaagaaactccggtcactgccatggttcatgacctcaaaggt  9747900                                                                   --------->ARR14(2)                                                                   <---------ARR14(2)   <----------DOF2                                     ----------->GT1 >DOF2                      <---------ATHB12          <---------TOE2(3) --TOE2(3)  <------ZmHOX2a(2)   <---------ICU4        <---------TOE1(3)     ------------>CBF   tgagactttaacagatcagaaactaaacccatcaacatttcttctactatgggtttagggtttaaaacgaataggctcttcaatttctgtttaaaatcaa  9748000                       <---------TOE2(3)               <------NtERF2              <---------DEAR3(2)             <---------DREB2C(2)             <---------RAP2.3(3)             <---------DEAR3(1)             <---------RAP2.6(2)                                                               <<<<<<             --------->ETT(1)                                                                  <<<<<<            --------->RAP2.6(3)                                                               ------>MYB46(1)           <-----------HVH21                                                                <--------          <-----------RAV1(1)                            <------------CBF       --------->YAB1------>MYB83    <----------DOF2    <---------ANAC55(2)            ------------>CBF         <------ZmHOX2a(2)   tatgggcttttagtgtcggcccattaagtatgtgtttttttaaaacgaatagactcttcaattgctgttttactaagaccgatcatatgcttaaccaaat  9748100                               <---------AHL20(1)                                               -----                               --------->AHL20(2)                                      <---------YAB1                    ----------->GT1                                               --------->YAB1<----                  <---------ANAC58   <---------YAB1                          --------->REM1(1)<------                  <---------ANAC46  <---------AHL20(2)                      <-------TEIL--------->YAB1                  <---------ANAC58  --------->AHL20(2)                  ----------->GT1----------->GT1 <<<SARD1 <---------ARR14(2)   --------->AHL20(1)           <----------ID1 <-----------GT1 <---------ICU4 <<<CBP60g--------->ARR14(2)   <---------ARR11(3)     ----------->GT1 ---------->DOF2<---------ICU4 -MYB59--------->YAB1         ----------->TBP        ------------------------>ANAC81--------->ICU4  -   ttcaagttatcgtatttgtttcttgtaaaactatatattaaaatagattacagaaaatgaaaaaaacaaaaacaaagttacatctcataatgaaaattac  9748200                                                                                                   <-                                                                                                   --                                                                    <---------ANAC55(1)           <--                                                                    <---------ANAC58           <-----                                                                    --------->ANAC55(2)       ------>NtERF2        --------->DAG2                                              <---------ANAC55(2)      <-------       ---------->DOF2                                     ---------->DOF2                   -------- --------->At5g28300                                    <------ZmHOX2a(1)                    -------- ---->ANAC46              --------->ANAC46            ----------->GT1     <---------MYB46(3) <------- -----YAB1             <---------ARR11(3)       --------->ANAC46    <---------ANAC58        --------- -----GT1----------->GT1<-----------GT1         <---------YAB1      <---------ANAC46      <---------- ---------->GT1        <---------AHL20(1)    --------->TOE1(2) <------ZmHOX2a(1)          --------->ALFIN1   gacagtaacaaaagtgaaatatcaatatacttcacattaactccaattctacgatagaggaaaaaggattacttgttggatgctcaaacactgtgtcgcc  9748300 --------ARR14(2) ------->ARR14(2) -------CCA1(2)                                                             <---------LBD16 -NtERF2                                                                <-------TEIL --bZIP60(1)                                                        ------>NtERF2 ->ETT(2)                                                          <---------ANAC46                 < ->bZIP60(1)                    <---------REM1(1)                ------->GAMYB--------->LBD16       - --ETT(2)                    <-----------RAV1(1)              --------->MYB52(1)           <---------LBD16 ->ID1--------->ZAT14    <---------GLK1(2)                   <---------WRKY38(1) <-------TEIL<------NtERF2 -RAV1(1)            ---------->DOF2            --------->ATHB12<---------DEAR3(1)         --------->ETT(1)   atatccaatacactcccaagaacaaaagattgtgttgtagcctttgaaaactattgggaatagacaacggcgcatacatccggtgcatattggtcgggag  9748400  Previous    Next  AGI:  At3g26540.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G16860.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO60934.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 9745779    to: 9747881    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g26550.1    Description:  DC1 domain-containing protein. similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G55770.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G55780.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G10370.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain C1-like (InterPro:IPR011424); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain DC1 (InterPro:IPR004146); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 9748132    to: 9750283    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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