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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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1        10        20        30        40        50        60        70        80        90        100 
    ------>ZmHOX2a(2)
   <------ZmHOX2a(2)
   --------->CCA1(2)
  --------->ARR11(3)
  <---------ARR11(3)
  --------->ARR14(2)
  <---------ARR14(2)                             <---------ANAC58
  --------->ARR14(3)                             <---------ANAC58
  <---------ARR14(3)                     <---------ARR14(2)
  <---------AGP1                         --------->ARR14(2)
  --------->AGP1                        <------ZmHOX2a(1)             <---------YAB1           <----
----------->ARR10                   ---------->DOF2 <---------WRKY18(1)                       <-----
-------->DOF2           --------->ARR14(2)  <---------ANAC58       <-------TEIL               ------
--->ZAT18               <---------ARR14(2)  <---------ANAC58 ------>ZmHOX2a(2)             ---------
-ZAT6                --------->HSFB2a(2)============================HOX2a_HOX2a          <---------YAB1
 
acaaagatctggagaagaattcttcaagaactggtcttaaaaaggatacttggcttgactctgatctatatacatgattcagagacagagtaatgaaagc  9279700
                                         --------->ARR11(3)
-----GLK1(2)                      --------->MYB52(1)     <-----------RAV1(1)
----HSFC1(2)                 <------ZmHOX2a(1)   <-----------GT1
--->HSFC1(2)                ----------->GT1<---------MYB59
->DOF2         <---------------------WRI1<---------ARR11(3)      <---------YAB1
 
ttctcacttgtttcatgtttctatgcttactaggaaaaaacagagaccttatttacgcttgtgttgttctcattgcaaaaacagttttgtttcatttcta  9279800
                                                <------------CBF
                                               -------->ATHB1
                                               <---------ICU4
                                               --------->ATHB12
                                               --------->ATHB51
                                              <---------AHL20(2)
                                              --------->AHL20(2)
                                              --------->ICU4
                                              <---------ATHB51
                                        --------->ANAC58
                                        --------->ANAC58
                                        --------->ANAC46
                                     <---------ZAT18                  <---------ZAT18
                 <------ZmHOX2a(1)   <---------ZAT14                <---------At4g35610            -
      <---------TOE2(2)              --------->ZAT18                <---------LBD16              <--
      <---------TOE1(2)          --------------->AtSPL8             --------->At4g35610          ---
      <---------TOE2(3)<---------YAB1--------->ZAT14        ------------>CBF                  ------
 
cattgttcttaggtatgtgaggacttgtgatttttcttagtacacacaaattattgggctaacaacaatttagcggagtcgaactcaagtgaaaaatgtg  9279900
                                ------------>CBF
                            <---------MYB46(3)
                     --------------->AGL15
                     --------->LBD16                      <-----------GT1
                     <---------------AGL15              --------->HSFB2a(1)
     <---------WRKY18(1)<---------MYB52(1)              --------->HSFC1(2)           <---------CCA1(2)
    --------->ZAT14 <-----------------AGL1              <---------HSFC1(2)       <---------ALFIN1
    <---------ZAT14 ----------------->AGL2              <---------HSFB2a(1)    ----------->RAV1(1)
  --------->O2      <-----------------AG               ------->TEIL        --------->ANAC46
<---------ALFIN1    <-----------------AGL2        --------->MYB52(1)       --------->ANAC58
-------->MYB46(3)   ----------------->AGL1     --------->ANAC58            --------->ANAC58       <-
-------ARR14(2)     =================================================================MADS_MADS   ---
------>ARR14(2)<---------HSFC1(2)              --------->ANAC46     <---------------AGL15       ----
--->ALFIN1     --------->HSFC1(2)              --------->ANAC58    ----------------->AGL3--------->TOE1(2)
 
gaaccacttgactgaagacacttccccgttttggttacaatctttgtaaaacgaaacgaattttcttcatcccaaaataagccaacacatatcatgggaa  9280000
                                                          <------------CBF
                                                        <---------ARR11(3)
                                                --------->ANAC58
                                                --------->ANAC46
       ---------->ID1                           --------->ANAC55(1)
  <---------ANAC58                              --------->ANAC58
  <---------ANAC58                              --------->ANAC55(2)
-----------CBF                       ----------->GT1    --------->ARR11(3)---------->DOF2
------>ATHB12          <------ZmHOX2a(1)        <---------ANAC55(2)  <---------ARR14(2)
----->ICU4------>ZmHOX2a(1)  ---------->DOF2--------->ARR11(3)---------->DOF2     <----------ID1  >>
 
agattgcttcgtcctcttcagagagaggaagaaaaagaagaagtgaatatcacgcaagagatattgaaagagaaaccgaaagaagaagacgaagaagaga  9280100
                                                                          <---------------------WRI1
                                                                      ------>MYB83
                                                                      ------>MYB46(1)
                                                                      --------->MYB52(1)
                                             >>>>>>>>>TBF1          <---------MYB46(2)
                 --------->AtLEC2     ---------->DOF2               <---------MYB59
             --------->ARR11(3)   --------->ANAC58            <---------TOE2(3) <-----------RAV1(1)
       <------ZmHOX2a(1)          --------->ANAC58            <---------YAB1    --------->ALFIN1
    <-----------RAV1(2)           ------------------------>ANAC81--------->CCA1(2)              ----
>>>>>>>TBF1  <---------ARR11(3) ---------->DOF2       ----------->GT1--------->MYB55(1)     <-------
 
agaagaagcaggagatgatcatgcatcatggaagagaaagcaaaagaagaagaagacaggttattaagataccaaacgacgatgtgttggaagagattat  9280200
                                                              ---------->DOF2
                                           <<<<<<<<<<<<<<<<<LFY--------->DAG2   <------ZmHOX2a(1)
----->YAB1       --------->TOE1(3) <---------ANAC58      <---------------------WRI1        <--------
--YAB1           --------->TOE2(3) <---------ANAC58  <------NtERF2       >>>>>>>>>GT-1  <-------TEIL
 
agtaaggcttccagtgaaaaccctaactagattccaaaccgtgtctaaacactggaggcatacgataaagtctaggtaaatcaggaagaaatacatgttg  9280300
                                                               <---------ATHB12
                                                              --------->ANAC58
                                                              --------->ANAC58
                                                         --------->ANAC46
                                                         --------->ANAC58
                                                         --------->ANAC58                   <-------
                                                    <-----------ARR10                       --------
                                               --------->MYB52(1)                         <---------ANAC46
                   <<<<<<<<<CBP60g             --------->CCA1(2)                        <------MYB46(1)
        ---------->DOF2                       <---------ARR14(2)                        <------MYB83
---RAV1(1)         <<<<<<<<<SARD1             --------->ARR14(2)                      <--------P <--
 
catcagaaaacaaaagaacccaaatttctctgtctctatgaagttagaagaaacgggtctaagccaagcattcgttacaagaccatgaggttggagtggt  9280400
                                      --------->ANAC58
                                      --------->ANAC58
                                   --------->STY1(2)
                                   <---------STY1(2)      --------->ARR14(2)          <----------DOF2
                                  --------->ANAC58        <---------ARR14(2)      <------MYB83
                              <-----------GT1 ---------->DOF2                     <------MYB46(1)
--AtMYB61                    <---------AHL20(2)          <------NtERF2           <---------AtMYB61
->ALFIN1   <---------ZAT6    --------->AHL20(2)        <---------ANAC46      --------->ALFIN1
--------DOF2        >>>>>>>>>TBF1 --------->ANAC58    <---------LBD16      --------->ALFIN1    -----
 
ctttgagtcgtctagtgggagaagaagaatatttaactagcaagaaacacaaagagaggcggatactattttccaagagtgtggatggtcttttttgttt  9280500
                               ----------->GT1
                               <---------YAB1
                             ----------->GT1
                          <---------ICU4
                          --------->YAB1
                         --------->ICU4
                         <---------ATHB51
                         <---------ATHB12                               <---------STY1(2)
                      <---------------AGL15                   --------->HSFC1(2)             <------
       --------->ALFIN1--------->WOX13(1)                     <---------HSFB2a(1)            -------
     --------->ALFIN1 --------------->AGL15                   --------->HSFB2a(1)            -------
     <---------ANAC46----------------->AGL3                   <---------HSFC1(2)      ---------->DOF2
     <---------ANAC58<-----------------AGL2                   --------->ZAT2 <------ZmHOX2a(1)
     <---------ANAC58<-----------------AGL3                   --------->At4g35610    ------->GAMYB
---->AHL20(2)     --------->MYB46(3)                          <---------At4g35610   --------->ANAC46
 
atatagtggtgtggacatgaaacagccaattatggtgataaatccagacacaagatggtctaagaagctccctcttgctaggattcaacgaaagaattat  9280600
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AGI:  At3g25545.1   
Description:  similar to unknown [Populus trichocarpa] (GB:ABK95265.1)
Range:  from: 9278082    to: 9279866    Orientation: Forward
Links:  TAIR  MIPS 
 
AGI:  At3g25550.1   
Description:  F-box family protein. similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT2G02030.1); similar to S haplotype-specific F-box protein, putative [Solanum demissum] (GB:ABI34316.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810)
Range:  from: 9280115    to: 9280824    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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