Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                          ------>MYB83                                                        ------>MYB46(1)                      --------                                                       ----------->RAV1(1)        --------->KAN4(2)           ------>ZmHOX2a(1)                         --------->MYB46(3)          <---------ICU4          --------->TOE2(3)                --------->DEAR3(1)  --------->YAB1   <---------YAB1   --------->YAB1                <------ZmHOX2a(1) --------->ARR14(2)          --------->ARR11(3) -------DAG2                  <---------STY1(1)    <---------ARR14(2)          <---------ARR11(3) --------DOF2  --------->YAB1--------->TOE1(2) --------->At4g35610     ------>ZmHOX2a(1)     <-------   ctttagcatcatcctcatcaaaatcacaaaccctaggagaaatcaccgaagcagaaccaacattgtcatcatcctctacatgatcattctctctctgaac  8835300                       <---------ICU4                       --------->YAB1                                             --------->At4g35610                      <---------YAB1                                           --------->At4g35610      ------->GAMYB --------->YAB1               <---------HSFC1(2)          --------->YAB1  --------->TOE1(2) <---------ICU4      <---------YAB1                      <------ZmHOX2a(2) ->ZAT14           <---------YAB1  ----------->GT1 <----------DOF2       <---------YAB1 --ZAT14         --------->YAB1    <---------ZAT6--------->HSFC1(2)    <-----------GT1   agttccaacgaaaacaacatcatcatcatcatctatagggttaaaattagaagctttctcttcacatcccaaattacgatcatcagcatcaaaatcacaa  8835400                                                   ------>MYB46(1)                                                  ----------->RAV1(1)                                      --------->LBD16                                     --------------->AGL15                                     <---------HSFB2a(2)                                     --------->HSFB2a(2)                                    ----------------->AGL2                       --------->GLK1(1)                                    ----------------->AGL3                      <---------ARR14(2)                                    ----------------->AGL1   <---------ICU4     --------->ARR14(2)                                    <---------LBD16------>MYB83                 --------->ARR11(3)                           ----------->GT1      --------->MYB46(3)              <---------ARR11(3)                       <---------YAB1<---------------AGL15--------->YAB1       <------ZmHOX2a(1)   accctatcaccaaaatcaaacgatttcgattgtaaattcccagaagtagaaccaacattctcatcatctcgcttaccttcaggatattcagttctaacaa  8835500                                  <---------MYB52(1)                               <---------MYB52(1)                               <------NtERF2                              ------>NtERF2                              <-----------HVH21                             --------->RAP2.3(2)                            <-----------GT1                             --------->RRTF1(3)                        ------->TEIL                             --------->RAP2.3(3)                       <---------TOE2(2)                             --------->DEAR3(1)                     --------->ANAC55(2)                            --------->ATERF1(1)                     <---------ANAC55(2)                            --------->RAP2.3(1)                     --------->ANAC58                           ------>NtERF2                     --------->ANAC46                           <---------ATERF1(1)               --------->ANAC58                           --------->LBD16           ----------->GT1--------->ANAC46            <----                          --------->DEAR3(1) <---------HSFB2a(2)<-----------HVH21               =====                        ------>ZmHOX2a(1)    <---------LBD16 --------->ANAC58                   -----                    ------>ZmHOX2a(1)  <<<<<<<<<TBF1--------->DAG2  --------->ANAC58------>ZmHOX2a(1)          <-----------TGA1--------->ANAC46   ------>ZmHOX2a(1) --------->YAB1 --------->ZAT6    -----   atacaacatcgtcgtcatcatccttcctccgccgtcgtttcttcttcctcggagaaggtgaacaagcatcacgcatgttaactctcctcttctcagtcct  8835600           ------->GAMYB         --------->ANAC58         --------->ANAC58           --------->LBD16  --------->ATHB12       --------->ANAC46            <---------HSFB2a(2)     --------->ANAC46              --------->HSFB2a(2)                                --------->HSFB2a(2)     <-----------GT1              <---------LBD16   --------->AHL20(2)                ------>ZmHOX2a(1)   <-----------GT1     ------>ZmHOX2a(2)            <---------AHL20(2)                <---------HSFB2a(2) -----HSFB2a(2)      <---------ARR11(3)--------->GLK1(1)                       <-------TEIL =============================HOX2a_HOX2a          <---------WOX13(1)  --------->ANAC58 ->ZmHOX2a(1)--------->LBD16<<<<<<<<<TBF1     <----------DOF2          --------->ANAC58        ------ ---->HSFB2a(2)      --------->ARR11(3)<---------GLK1(1)     --------->GLK1(2)--------->GLK1(2)<-----   cgaatttacacaacccagagactgatcttcttcttctccagaaatcccctttgatttattgagaatcgagttcaagtaagattcagtcctcgaacgagtt  8835700     ----------->RAV1(1)                                           <---------TOE2(3) --------->HSFB2a(2)              ----------->GT1                ----------->HVH21 <---------HSFB2a(2)--------->ARR14(2)                        <---------ARR14(2)             ------>ZmHOX2a(1) --->ARR11(3)       <---------ARR14(2)                --------->YAB1               <---------At4g35610 ----ARR11(3)      <---------CCA1(2)   --------->GLK1(1)      --------->ARR14(2)---------->DOF2     -   cttctagcaacacaactagtcatatccatggctgaagagagaaatcgaaaaccctagaatagtggatttgacgaagaaggaagaaagctcatgtcctctc  8835800                                                                                                 <---                                                          --------->ANAC46                       ----                                          <---------DOF5.7(2)             ---------->DOF2        <---                                        --------->DOF5.7(2)            --------->AHL20(2)       <----                                 <----------DOF2         --------->HSFC1(1)                     <----                   <---------AHL20(2)   --------->At5g28300       ------------>CBF              =====    <---------MYB52(1)         ----------------->AGL1    <---------HSFB2a(2)      <------------------   <-------GAMYB  --------->AHL20(2)    <------NtERF2    --------->HSFB2a(2) ----------->GT1    <----  <-----------RAV1(1)        <-----------GT1         <----------DOF2   --------->YAB1      --------->MYB52(2) ----->ZmHOX2a(1) <---------AHL20(2)  <---------ANAC46   <---------HSFC1(1) <---------TOE2(3)--------   tcctctgttgtctctgcaaatttttttttttttgcctttggcggtaacgattcaactttctcgaaacattcaataaaaaaggtttttttttgtttgtttc  8835900            ----------->GT1      --------->At5g28300     ----------->GT1    <---------TOE2(3)                                                                   <---------WOX13(1) ------------AGL15                                                                     <------------CBF ----------->AGL15                                                                 <------------CBF -------DOF2--------->YAB1                                                    <---------ANAC46 -------------AG                                <---------AHL20(2)         <---------AtMYB61 -------------AGL2                              --------->AHL20(2)       <------------CBF =======================================================================================MADS_MADS ------ANAC81    --------->ICU4--------->ALFIN1--------->AHL20(2)       <---------------AGL15 -------------AGL3      ---------->DOF2----------->GT1                  --------------->AGL15 -->ID1   <------------CBF--------->ICU4    --------->ICU4             <---------YAB1 --------->ATHB12   tttattagggtaaattgtaatatttgaaaagatgaggggctaagtgaaaattaatagataagtttgcttcatttctattggtgggaattgattgacatga  8836000                                                                         ----------->GT1                                                                 --------->AHL20(1)                                                   <---------AHL20(2)   <---------ZAT6                <---------MYB46(3)          <---------TOE2(3)    <---------ARR11(3)               --------->ALFIN1     <---------At4g35610          <---------AHL20(1)          ---------->DOF2       <-----------HVH21 --------->AHL20(2)<---------YAB1      <----------DOF2    ---------->DOF2   <-----------GT1    --------->CCA1(2)       --------->AHL20(2)---------->DOF2   gagtttcaaagttaaaggtggatgttactggttctgtcagtagatagaggtatttaataggggtcaaaatattagtggaaaaatgaaaagcttttagtat  8836100                  <---------MYB46(3)                  ----------->GT1          <-----------GT1                                                                 <---------DAG2     <---------AHL20(2)                                                          <---------ARR14(2)    --------->AHL20(1)                                                           <---------GLK1(2)    --------->ARR11(3)                    <-----------RAV1(1)                    --------->ARR14(2)    <---------AHL20(1)              ---------->ID1     <------ZmHOX2a(1)      <---------TOE2(3)    --------->AHL20(2)       <---------AHL20(2)       <----------ID1       <---------ANAC58    <---------AHL20(2)      --------->AHL20(2)     <--------P              <---------ANAC58<---------MYB52(1)    <---------ARR11(3)      <---------AHL20(2) <---------ANAC46--------->GLK1(2)<------ZmHOX2a(1)   --------->AHL20(2)       <---------AHL20(1)<---------At4g35610   <---------YAB1        <----------DOF2   ttcaaatatattttacaaattggttactaattttttttgttgtaatggtgctggtaaggacaaaaattctattatttgcttaggattctctcctttatgt  8836200  Previous    Next  AGI:  At3g24340.1    Description:  CHR40 (chromatin remodeling 40); ATP binding / DNA binding / helicase. similar to CHR31 (chromatin remodeling 31), ATP binding / DNA binding / helicase/ nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G05490.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63497.1); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains InterPro domain DEAD-like helicase, N-terminal (InterPro:IPR014001); contains InterPro domain DNA/RNA helicase, C-terminal; (InterPro:IPR001650) Range:  from: 8832092    to: 8835729    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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