Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         --------->ARR11(3)      --------->YAB1   ---------->DOF2 <------NtERF2 -------->LBD16 ---------RAP2.6(3) ----->NtERF2 ------->RRTF1(3) ------->RRTF1(2) ------->RAP2.3(3) ------->RAP2.6(2) ------->RAP2.3(2) ------->DEAR3(1) --------ATERF1(2) ------->ATERF1(2) ------>ATERF1(1) ----NtERF2 ------>ORA47(2) ------>DEAR3(2) ------>RAP2.3(1)                                                                                   < ------>RRTF1(1)                                                        <----------DOF2             - ------>ERF1                                                      --------->ARR11(3)                - ----->At4g35610                 <------ZmHOX2a(1)                <---------ARR11(3)                < ------RAP2.3(1)               <---------TOE2(3)                 --------->GLK1(1)                  < ------At4g35610         <---------TOE1(3)                      <---------ARR11(2)                  < ------ATERF1(1)         <---------TOE2(3)                 <---------ANAC46                       <-- ---->ARR14(2)        --------->DOF5.7(2)          --------->KAN1<---------GLK1(1)                --- ---->ARR11(2)        <---------MYB52(1)   --------->DOF5.7(1)<---------MYB46(3)   ------------>CBF - -----ARR14(2)       <-------GAMYB       <------ZmHOX2a(1)<---------AtMYB61        *TSS           --- -----ARR11(2)      <---------MYB46(3)<---------LBD16   <----------DOF2<---------DOF5.7(1)   <-------   gccgccaaagataaccaagaggtcgttaaggctaaggagaccaggaagaggctatatgctttggtggatatcatcttttgtttgtatcaatatttgtgtg  8692700        <-----------TBP        --------->AHL25(1)                                                                          <        <---------AHL20(2)                                                                         <-        --------->AHL12(3)                                         --------->RVE1(2)               <-        --------->AHL20(3)                                        <---------ICU4                   --        --------->AHL20(2)                                        --------->YAB1                   --    <---------ICU4                                               <---------YAB5                    --    --------->ATHB12                                             --------->ICU4                    <-    <--------HAHB4                                              --------->AHL12(2)                 <-   <---------ATHB12                                --------->WOX13(2)                              <-   <---------YAB5                               ------>ZmHOX2a(2)<---------YAB1                    -- --------->WOX13(1)                           --------->ARR11(3)<---------WOX13(2)                 <- <-----------GT1                              --------->RVE1(2) --------->WOX13(2)                 -- ---------AHL12(1)                            <---------ARR11(3)<---------AHL12(2)                 -- -------->AHL12(1)                          <---------YAB5      <---------AHL20(3)                 -- -------->AHL20(2)                          --------->ICU4      --------->AHL20(3)                 <- ---------AHL20(2)                <-----------TBP  <---------WOX13(2)   ---------->DOF2           <-- ---------AHL25(1)              <---------------AGL15          <---------ICU4--------->CCA1(2)    --- ---------AHL25(3)              --------------->AGL15         --------->AHL12(1)               ------ -------WOX13(2)               <-----------------AGL3         <---------AHL12(1)      ----------->GT1 ------>WOX13(2)               ----------------->AGL2       --------->ANAC55(2)   --------->DOF5.7(1) -------->AHL25(1)             ----------------->AGL3  <---------YAB1--------->YAB1 --------->DOF5.7(1) ------>AHL12(2)       --------->WOX13(2) --------->YAB1    --------->YAB1--------->DOF5.7(1)-------- --ANAC46     --------->ANAC46 <-----------------AGL2<-----------GT1<---------YAB1---------->DOF2 ---   aattaatcatttatataagaaacttatttgactcccatatatagtaatgatctaattaccatacataattatcaaaaagatagaaaaagagtcaaaatca  8692800                                               --------->WOX13(2)                                               <---------WOX13(2)                                              <---------AHL25(3)                                             --------->AHL12(1)                                   ---               --------->AHL20(2)            <---------AHL12(1)                                   <--               <---------AHL25(3)            <---------AHL25(3)                                   ---    ----------->GT1                          --------->AHL20(1)                                   <-- ---------AHL12(2)                           <---------AHL20(1)                                   <-- --------AHL20(1)                            --------->AHL20(2)                                   <-- --------AHL20(3)                            <---------AHL25(1)                                   --- ------->AHL20(3)                            --------->AHL25(2)                              -------- ------->AHL25(1)                            <---------AHL25(2)                              <------- ------->AHL20(2)                            --------->AHL25(3)                              -------- --------AHL12(1)                            --------->AHL25(1)                              <------- --------AHL25(1)                            <---------AHL20(2)                              -------- --------AHL25(3)                            --------->AHL12(3)                              -------- ------->AHL25(3)                            <---------AHL20(3)                              -------- --------AHL25(2)                            <---------AHL12(3)                        <---------AHL20(2) ------->AHL25(2)                          --------->WOX13(2)               <------MYB83     <------- ------->AHL20(1)                    --------->ZAT18                        <------MYB46(1)  -------- ------->AHL12(1)             ---------->DOF2--------->AHL20(3)            --------->MYB111(2)    <-- --------AHL20(2)          --------->TOE2(3)--------->AHL25(3)             --------->MYB111(1)    --- -------ATHB12 <---------AHL20(2)  --------->ZAT14                         --------->MYB46(2)<------- ------>AHL25(3)        <---------GLK1(2)  <---------WOX13(2)              --------->MYB59--------->YAB1 --->YAB5    <---------WOX13(2)  --------------->AtSPL8                    <---------MYB46(3)<------- ->RVE1(2)   --------->WOX13(2)  <---------------AtSPL8                <---------ZAT6 --------->AHL20(2) ------>AHL20(2)       --------->YAB5<---------ZAT14         <-----------GT1<---------ANAC46 <-------   ataaattagtaactaaattaaaaactgattcttaaagagtactctaattaattagagagaaatttacaaactagtgtttggtagactattaaaaataaaa  8692900          --------->ANAC46     ------->TEIL   --------->YAB5 ------>AHL25(2) -------AHL20(3) ------>AHL20(2) -------AHL20(2) -------AHL25(1) -------AHL25(2) ------>AHL20(1) ->AHL20(1) --AHL12(3) ->AHL20(2) --AHL20(2) ->AHL25(1) ->AHL20(3) ->AHL25(3)                                ---------->DOF2                                         <- --AHL25(2)                           <---------------AGL15                                        <- ->AHL25(2)                           --------------->AGL15                                        <- -------AHL25(3)                     ================================================================ ------>AHL25(1)                     ----------------->AGL3         <------ZmHOX2a(1)              <- --AHL25(1)                       --------->RVE1(2)                ----------->GT1   <----------DOF2- --AHL20(3)                       --------->GLK1(2)      --------->ATHB12   <---------YAB1         <- --AHL25(3)       <-----------GT1<---------GLK1(2)      <---------YAB1  <---------AHL20(3)         --   taaaatgaatcaacaccatttttcattctcttcaagaatcccattaaaagtcaaaaccatgtttgggctaggaaaaatatgtttgggctttagtaggccc  8693000                                                                                  <---------AHL12(3)                                                                                  --------->AHL12(3)                                                                                  --------->AHL20(3)                                                                                  <---------AHL25(1)                                                                                  <---------AHL20(3)                                                                                  <---------AHL12(2)                                                                                  <---------AHL25(3)                                                                                 --------->AHL25(1)                                                                                 <---------AHL20(2)                                                                                 <---------AHL25(1)                                                                                 <---------AHL25(3)                                                                         ----------->GT1                                                                    --------->AHL12(3)                                                                    <---------AHL12(3)                                                                    <---------AHL20(3)       --------                                                                    --------->AHL20(3)       <-------                                                                  --------->AHL20(2)         --------                                              <---------ARR11(2)  <---------AHL20(2)         <-------                                             --------->At5g28300  <---------AHL25(1)        *TSS                                             <-------GAMYB    <---------AHL12(3) --------->AHL20(2)                                            <---------DEAR3(2)--------->AHL12(3)--------->AHL20(2)                                 --------->YAB1              <---------ICU4     <---------AHL20(2)                                <---------YAB5--------->ARR14(2)  --------->AHL12(3)  <---------YAB1             ------->GAMYB      <---------YAB1--------->ARR11(2)  ----------->TBP--------->AHL25(3)             <---------------AGL15       ------------>AtMYB77<---------AHL20(2) --------->AHL20(3)          <-----------GT1       --------->ICU4<---------ARR14(2)  <---------AHL12(3) --------->ARR11(3) -------->P ----------------->AGL3 <---------YAB1           --------->AHL20(2)  <---------AHL20(3) --------MYB111(1)         ----------->GT1  ----------->GT1--------->AHL12(2)  --------->AHL12(2) --------MYB52(2)       --------->MYB52(1)  <---------MYB46(3)<---------AHL12(2)--------->AHL25(3) --------MYB55(2)       ------------>MYB.PH3(1)            <---------WOX13(2)  --------->WOX13(2) =============================MADS_MADS  ------------>MYB.PH3(1)  --------->AHL25(1) <---------ARR11(3) --------MYB111(2)      <---------DOF5.7(2)<---------DEAR3(1)<---------AHL25(3)<---------WOX13(2) ------>GAMYB--------------->AGL15--------->TOE2(3)        --------->WOX13(2) <---------WOX13(2) --------MYB46(2)  --------->DAG2--------->YAB5        --------->ANAC55(2)   --------->AHL20(2)     - ------->MYB46(3) ---------->DOF2<--------HAHB4        <---------ANAC55(2)  <---------AHL20(2)  <----   aactacccaaaataaccacataaagtaaacggttatcattaatgggcggttactaatacttaataaatataaatatagttaaattaatatcatttctaga  8693100                                                                                <----------DOF2                                                                               <---------ANAC58                                                                               <---------ANAC58         <-----------GT1                                               ------>NtERF2      <---------ICU4                                                  ----------->HVH21     ------>ZmHOX2a(1)                                                --------->DEAR3(1)    --------->TOE2(3)                                                 <---------DEAR3(1)    <--------   --------->YAB1                                                    --------->RAP2.3(1)    --------- ->HSFB2a(2)                                                        --------->LBD16       <---------LBD16 --HSFC1(1)                                                         <---------ATERF1(1) --------->ARR11(2) ->HSFC1(1)               --------->RVE1(2)           <---------MYB52(1)<------NtERF2   <---------ARR14(2) --HSFB2a(2)      <----------DOF2              --------->KAN1      --------->DEAR3(1)   --------->ARR14(2) -------->KAN1   <---------DAG2               <---------ARR14(2)  <---------LBD16   <-----------GT1 -----ARR11(3)   <---------DOF5.7(1)          --------->ARR14(2)<-----------GT1<---------ANAC46<-----   gcttatcctaatttctctccctttcgaaaatcgaaacaaatcggtgcgattactccgttttgaatttcaccggcgacgatggctttgaacaatccgcgaa  8693200                                                           <---------DOF5.7(2)                                                 --------->ANAC46         --------->ARR11(3)                 <---------SPL7(1)         <---------ARR11(3)                --------->DEAR3(1)        --------->GLK1(1)                 --------------->AtSPL3        <---------GLK1(1)                 --------------->AtSPL8        --------->LBD16        <---------RVE1(1)               ------->GAMYB     <---------ARR11(2)        --------->RVE1(1)              --------->MYB46(3) --------->ARR14(2)        <-----------HVH21       <---------ARR11(3)             ------>MYB46(1)     <---------ARR14(2)        --------->TOE2(3)  --------->ANAC46           --------->At4g35610--------->HSFB2a(2)    <---------ANAC55(2)    <------MYB83 <---------LBD16   <---------TOE2(3)  ------>MYB83        --------->ARR11(2)       <----------ID1 -HSFB2a(2)     <---------DAG2     --------->MYB46(3)    --------->DOF5.7(2)    --------->DOF5.7(1) >LBD16--------->ARR11(3) <---------At4g35610   <---------HSFB2a(2)    <---------ANAC58       <------MYB46(1) ---------OsCBT <----------DOF2   ------->TEIL--------->SPL7(1)        <---------ANAC58---------->DOF2   gaacacggagatatctcgctttaggtttagccgatgaaccaatcgccgtaccagaaaccgtttacgctcaagtccgtgagaaaaaacgtcaaagcttggt  8693300                                --------->ZAT14                                <---------ZAT14                            ------>ZmHOX2a(2)                           <------ZmHOX2a(2)                           --------->GLK1(1)                          <---------AGP1                                    --------->CCA1(2)                          --------->ARR14(3)                                <---------KAN1                          --------->GATA12                                 --------->ARR14(2)                          <---------ARR11(3)                               <---------RVE1(2)                          <---------GATA12                              <---------TOE2(2)                          --------->ARR14(2)                            <---------TOE1(2)  --------->ANAC58                          <---------ARR14(2)                        <---------LBD16<-----------HVH21                          --------->ARR11(3)                 --------->ALFIN1    ------->TEIL                          <---------ARR14(3)                 <---------AtMYB61<---------YAB1                   <----------ID1                          <---------ANAC58<---------ARR14(2)               <---------HSFB2a(2)        ------>ZmHOX2a(2)<---------ANAC46<---------ARR11(2)       <               --------->HSFB2a(2)    ----------->HVH21    <---------ANAC58--------->ARR11(2)  <-----     <---------ARR11(3)   --------->RVE1(2)               --------->ATHB12<------ZmHOX2a(1)--------->ANAC58   ttgtcgagttcttagccctagaagacaagatctctactctgtgatcgataaactccgtcttgagtggtgtctcggaggatatgaatgtcatggacgcatt  8693400       <------NtERF2      ------>NtERF2      --------->LBD16     <---------ANAC46    <---------LBD16    --------->ATERF1(1)    <------NtERF2   ------>NtERF2   <---------ATERF1(1)   <---------RRTF1(1)   <---------DEAR4(2)   <---------ERF1   <---------RAP2.3(1)   <---------ORA47(2)   <---------RAP2.6(1)  <---------DEAR3(1)  --------->ATERF1(2)  <---------ATERF1(2)                                              ------>ZmHOX2a(1)  --------->DEAR3(1)                                          <------MYB83  <---------RAP2.6(2)                                         <------MYB46(1)  <---------RAP2.3(2)                                        <---------AtMYB61               <-------  <---------RRTF1(3)                                         --------->MYB59              <---------MYB52(1)  <---------RRTF1(2)             --------->DOF5.7(1)         <---------MYB46(3)          <-------GAMYB  <---------RAP2.3(3)           --------->DOF5.7(1)          --------->MYB111(1)      <---------ANAC46 <---------LBD16                ---------->DOF2             <--------P          <---------MYB46(3) <---------ABI4(1)  <---------ANAC58                       <-------GAMYB ------->MYC3 <---------ANAC58 --------->ATERF1(1)<---------ANAC46    --------->GATA12  --------->MYB55(2)   <---------WOX13(1) <-- ---------RAP2.3(1) <---------ANAC58    <---------GATA12  <---------MYB46(3)<---------MYB46(3)    --- ----KAN1    <-----------HVH21---------->DOF2          <----------DOF2   <-------MYC3 <---------ANAC58   atcggcggcgggaagtgtcagttcgtgtttgagaaagagcgggatttagaaatggttctttggttggtccttacacgtttgatggatggctcgttgtgtt  8693500                                                                                                <----                                                                    <---------ARR11(2)          <----                                                              <---------LBD16                   -----                                                              --------->TOE1(2)                 -----                                                             <---------ANAC46                   <----                                                             <---------ANAC58                   <----                                                             <---------ANAC58      <----------DOF2                                                  <---------MYB46(3)--------->GLK1(2)        --------                                               <-----------RAV1(1) <---------GLK1(1)        ---------                                        --------->ATERF1(1) <-------TEIL        --------->GLK1(2)                                       <---------ORA47(2)  --------->CCA1(2)    <---------ARR14(2)          <---------At4g35610          <---------DEAR3(2) --------->ARR11(1)    <---------ARR11(1)          --------->At4g35610          <------MYB46(1)    --------->ARR14(2)    --------->RVE1(2)   < --------->ARR14(2)                    <---------ATERF1(1)--------->GATA12      --------->ARR14(2)  < <---------ARR14(2)                    <------MYB83<-------GAMYB<---------TOE1(2)<---------YAB1<----- <---------ARR11(2)                   <---------DEAR4(1)  <---------ARR14(2)    <-----------ARR10   - ----RAV1(1)            ------>ZmHOX2a(1) ------>NtERF2   <---------GLK1(2)     <---------ARR11(3)  < -------HSFB2a(2)   <---------ARR11(3)<---------DREB2C(2) <---------ARR11(2)    --------->ARR11(3) <- -------------->AGL1--------->ARR11(3)<---------DEAR3(1) --------->KAN1<---------YAB1       <--------   gcagaaatgggaagatgagcaaggtcctgagtttttgaagtcggtgcctatgtggttgaagattcgtgggattccgattcagtatctttgtgatgggacg  8693600  Previous    Next  AGI:  At3g24068.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G24065.1); contains InterPro domain Plant self-incompatibility S1 (InterPro:IPR010264) Range:  from: 8692198    to: 8692683    Orientation: Reverse Links:  TAIR  MIPS  AIP    AGI:  At3g24070.1    Description:  zinc knuckle (CCHC-type) family protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G13450.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878) Range:  from: 8693092    to: 8694716    Orientation: Forward Links:  TAIR  MIPS  AIP      Please cite the corresponding publications when using AthaMap.
	printer-friendly version