Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                 <----------DOF2                            --------->ARR11(3)                            <---------ARR11(3)                          ------->TEIL               <---------ARR11(3)                                                   --------->ANAC58               --------->ARR11(3)                 --------->HSFB2a(1)               --------->ANAC46 --------->ZAT18--------->GLK1(1)                 <---------HSFB2a(1)         <-----------TGA1 <---------ZAT18<---------GLK1(1)                 --------->HSFC1(2)          <-----------HVH21 >YAB1----------->GT1  <---------YAB1             <---------HSFC1(2)<-----------GT1 --------->ANAC58   tggtccactagttaaaagatttcttatgaatgtctttttatgcagagttcgaattttctcacaacgattttaaccattttcgtcactcgcaaaattttta  8467100                                                                                              -------                                                                                          <---------DAG2                                                                                          <----------DOF2                                                                                    <---------ARR11(3)                                                                             --------->AHL20(2)                                                                             <---------AHL20(2)                                                                          <---------AHL20(2)  -------                                                                         --------->AHL20(2)   -------                             <---------AHL20(2)                          <---------AHL20(2) <--------                            --------->AHL20(1)              <---------AHL20(2)--------->AHL20(2)  <--                            <---------AHL20(2)     ---------->ID1    --------->LBD16--------->GLK1(2)                            --------->AHL20(2)<---------ARR14(2)   <---------LBD16  --------->ARR11(3)                  --------->DAG2              --------->ARR14(2) <-----------GT1   --------->RVE1(1)                 ---------->DOF2           <------ZmHOX2a(1)--------->AHL20(2)<---------AHL20(2) <---   gtggataacaaaaaaaaaaaaaagttgaaatttaatggaaatttaggagatttgtccaatttttaattttcccgattaatttaaaaaatctactttacgc  8467200                                                               <---------AHL20(1)                                            <---------AHL20(2) --------->AHL20(1)                                            --------->AHL20(2)<---------AHL20(2)                                          <---------AHL20(2)--------->AHL20(2)                                          --------->AHL20(2)<---------AHL20(2)                                        --------->AHL20(2)<---------AHL20(2)                                        <---------AHL20(2)--------->AHL20(2)                                      <---------AHL20(2)--------->AHL20(2)                                      --------->AHL20(2)<---------AHL20(2)                                    <---------AHL20(2)--------->AHL20(2)                                  --------->AHL20(2)<---------AHL20(2)                                  <---------AHL20(2)--------->AHL20(2)                                <---------AHL20(2)--------->AHL20(2) -->ANAC46                      --------->AHL20(2)<---------AHL20(2) -->ANAC58                    <---------AHL20(2)--------->AHL20(2)                             ------ -->ANAC58                    --------->AHL20(2)<---------AHL20(2) --------->YAB1            -------- ---GT1 ---------->DOF2     --------->AHL20(2)--------->AHL20(2)  <---------YAB1   --------->HSFB2a(2) --------DOF2        <-----------GT1--------->AHL20(2)<---------AHL20(2)           <---------HSFB2a(2) ------DAG2   <-------TEIL  <---------AHL20(2)<---------AHL20(2)  <---------AHL20(2)       <---------   cttttattgacaaagatgcatattaactatatatatatatatatatatatatatatatatatatatatattataaactaaattttgtagaacccatcaga  8467300                <----------DOF2 <---------AHL20(2)                --------->TOE2(3)      ---------->ID1            <---------AHL20(1)                                         --------->ANAC46   --------------->AtSPL8       --------->AHL20(2)                             --------->ANAC58   <---------------AtSPL8   --------->AHL20(2)                 <------------CBF--------->ANAC58 --->At4g35610  --------->TOE1(3)                    --------->AHL20(2)        --------->ANAC46 ->YAB1      <-----------GT1--------->YAB1      --------->AHL20(2)     ----------->TBP     --------->ANAC58 --HVH21 <----------DOF2 --------->WOX13(1)    --------->AHL20(2)----------->GT1           --------->ANAC58   agaaatttgtacttttaactttaaaatcaattaaaaaatttcaattcaaataaaaaaaaatccaaaattgtttataaattcaagaaatataacacacaag  8467400                                          <---------O2                                          --------->O2                                   --------->At4g35610                              <---------ZAT18                                          --------->YAB1                    ----------->GT1      ---------->ID1   <---------ANAC58       --------->ANAC58               ----------->ARR10        <-----------GT1   <---------ANAC58   --------->ANAC58           --------->ZAT14    --------->ZAT18           *TSS                 --------->ANAC58           <---------ZAT14    --------->ZAT14 <----------DOF2 <---------LBD16--------->ANAC46  ------          --------->ALFIN1   ----------------------->TaNAC69(2)<---------LBD16   --------->ANAC58 <--   ttgacataaacagtggagagatttgtgaaatgtgaactcttttgacgtctttctcatatttcgtctcgggacaattcacacgcactgaatcatctctctc  8467500                                         --------->ANAC46                                         --------->ANAC58                                   --------->ANAC58                                           <------                                   --------->ANAC58                                   ------->TEIL                                 ---------->DOF2                                      <---------ARR11(3)                             --------->ANAC58                                         <---------ARR11(1)                             --------->ANAC58                                        <---------CCA1(2)                             --------->ANAC46                                      ------>ZmHOX2a(1)                           --------->ANAC58        <---------AHL20(2)         --------->GLK1(1)    <-  <------ZmHOX2a(1)        --------->ANAC58<<<<<<<<CAMTA3                     <---------GLK1(1)------ ----->HVH21           --------->ANAC58  --------->ANAC58            <---------ARR14(2)      <------- -------O2             --------->ANAC58<---------ALFIN1              --------->ARR14(2)  <----------DOF2   acgaggactattcagccatttgcaaacgcacacacaaacgcacacgcgtttatttttttttcgccaaatcaaatctgaagagttcctgtatcttttaacc  8467600                                                               <---------HSFC1(2)                                                               --------->HSFC1(2)          ----------                                                             <---------ARR14(2)      <---------At4g35610                                  ----------->GT1            --------->ARR14(2)      --------->ZAT2                                 --------->ANAC58    ----------->HVH21           <---------WOX13(1)                            <---------WOX13(1)      ------>ZmHOX2a(1)          --------->ATHB12                          <---------MYB46(3)        <---------HSFB2a(2)       <---------YAB1                          --------->ATHB12          --------->HSFB2a(2)     <---------ANAC46     <<<<<<<<<TBF1      <---------MYB52(1)      <---------ARR14(2)          <---------ANAC58 ---At5g28300         <---------ANAC46          --------->ARR14(2)          <---------ANAC58 ---------DOF2   --------->ARR11(3)           <---------MYB46(3)    --------->HSFB2a(2)----------->HVH21 --->MYB46(3)    <---------ARR11(3)           --------->MYB55(2) <-----------HVH21   --------->At4g35610 ----GT1<<<<<<<<<TBF1<-------TEIL--------->ANAC58  <---------LBD16----------->RAV1(2)<---------ZAT2   gctcttcttcttcttcagagagcttcgttgattgaacggaaaaaatggtggttcctggacggagaaccgtctgggattgtgtgattgagctgacaaagat  8467700                                                                                             --------                                                                                            <--------                                                                                            <--------                                                                                        <---------ANAC58                                                                                        <---------ANAC58                                                                                <---------DEAR3(1)                                                                                --------->WRKY12                                                                                <---------WRKY12                                                                                <---------ETT(2)                                                                                --------->DEAR3(1)                                                                                ----------->HVH21                                                                                --------->ETT(2)                                                                              <-----------HVH21                                                                           <---------At5g28300  <----                                                                          <-----------GT1  <---------LBD16                          <----------DOF2                           --------->ALFIN1   <---------ZAT2                     ------>ZmHOX2a(1)                             --------->LBD16 --------->ANAC46                  <------ZmHOX2a(2)         --------->YAB1        --------->DEAR3(1)   --------->ZAT2                 --------->ARR14(2)        <---------YAB1         --------------------->WRI1<--------                 <---------ARR14(2)      --------->YAB1   <-----------ARR10<---------DOF5.7(2) <----- >DOF2         ----------->ARR10    --------------------->WRI1    <---------ANAC46<---------LBD16   ggctcaagagaactgtgtcgatcctcgtctttgggcttctcagttatcatcgaatttgaaattcttcgccgtggagttaccgtcgacggagcttgcggag  8467800       <---------ANAC46                            <---------ANAC46       <---------ANAC58                            <---------ANAC58       <---------ANAC58                        <---------HSFB2a(1)      --------------->AtSPL8                   --------->HSFC1(2)                 <-----------GT1 ->LBD16                    <---------TOE2(3)  <---------HSFC1(2)   <----------DOF2 -ANAC58                --------->YAB1  <---------ANAC46           <---------ANAC58 -ANAC58            ----------->GT1    --------->ATHB12---------->DOF2     <---------ANAC58 -----MYB46(3) <---------MYB46(3)  ------>ZmHOX2a(1)--------------->AGL15  <---------ANAC58 -ANAC46  <---------TOE1(2)<-----------GT1     --------->HSFB2a(1) <---------ANAC46 ----TOE2(2)   <-----------RAV1(1)<---------YAB1   <---------ANAC58<---------ANAC58   ------>ZmHOX2a(1)   gttattgtttcgtacatttgttgggataataacgttcctattgtttggaagtttcttgaaagagctatggctttgaagcttgtttctcctctcgttgttc  8467900                                                                           --------->ANAC55(2)                                                                           ----------->GT1                                                                           <---------ANAC55(2)                                                                           <---------ANAC46                                                                           <---------ANAC58                                                                           <---------ANAC58                <---------ARR14(2)                                    <---------AHL20(2)       <-----           ------>NtERF2<-------TEIL                                 --------->AHL20(2)        <-----           <-----------HVH21                                         <---------AHL20(2)        ------          ----------->HVH21                   ------>ZmHOX2a(1)   --------->ATHB12            <------        <---------At4g35610                  --------->TOE2(3)   <---------YAB1             <-------GAMYB   ttgctcttctcgctgacaggtctggattcatcgctcatggattgtttccttagggttctatgtgttgatgatttatttcgtaatttggattgtgagttgg  8468000  Previous    Next  AGI:  At3g23590.1    Description:  RFR1 (REF4-RELATED 1). similar to REF4 [Arabidopsis thaliana] (TAIR:AT2G48110.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22492.1); similar to hypothetical protein OsI_024434 [Oryza sativa (indica cultivar-group)] (GB:EAZ03202.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71086.1) Range:  from: 8467456    to: 8473634    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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