Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                    --------->LBD16                                                                            <-------TEIL                                                                         -------->HAHB4                                                                         --------->YAB1                                                                        <---------YAB1                                 <---------REM1(1)                 --------->ANAC55(2)                           <---------TOE2(3)                       <---------ANAC55(2) ---------->TGA1         <---------AHL20(2)          ------>ZmHOX2a(2)  --------->ICU4 ---------->HVH21       --------->AHL20(2)      <---------WOX13(1) --------->ANAC55(1) ------>At4g35610<---------GLK1(1)        --------->ICU4           --------->ANAC58 -------At4g35610--------->GLK1(1)    --------->ARR11(3)           --------->ANAC58       <----------ID1   tgctgacgcttagtttgtgatatccatttaatgtgatgaaggtcatggtgatggatcgtttctattgacaagtaatgatacatccgagagaagcgccaag  8312900                                                 --------->MYB59                                               <---------MYB52(1)                                              ------------>MYB.PH3(2)                                          --------->YAB1                                         <---------YAB1                    <---------ZAT6       <----                                        <---------TOE2(3)         --------->ARR14(2)            <----                <---------ARR11(3)     --------->YAB1             <---------ARR14(2)           ------                --------->ARR11(3) --------->ATHB12         <------ZmHOX2a(1)     <---------ARR11(3)                <-----------ARR10 <---------YAB1 --------->MYB46(2)        ----------->HVH21   <-----      --------->ZAT18            <---------GLK1(2)   --------->MYB52(1) <---------STY1(1)      <-----     ------>ZmHOX2a(2)       <---------At4g35610 --------->MYB52(2)     --------->STY1(1)    <-------   tattcgatcgcgctgcaatatctcatcttggagcagattattgatgatagttagttaacagaggagagtatcccctagtgacaagttctgtttttaagat  8313000                                                         <-------TEIL                                                      <------MYB46(1)                                                      <------MYB83                                                     <---------------AtSPL8                                                     --------->MYB111(1)            <---------MYB52(1)                       --------->MYB59       -------->P                                    --------------->AtSPL8     <---------WRKY45                                <---------------AtSPL3     <---------WRKY12                                --------------->AtSPL3     <---------WRKY38(1)                         <--------HAHB4    --------->WRKY18(1)                          <---------ICU4 -----CCA1(1)               ---------->ID1       --------->ATHB12 -----RVE1(1)     --------->AHL20(2)             --------->ATHB51                     <----------DOF2 --->ARR11(3)     <---------AHL20(2)            --------->ICU4<----------DOF2   <------------CBF ----AHL20(1)   <----------DOF2                <---------------AGL15          <---------AHL20(2)   <- ----ARR11(3)<---------ARR11(1)                --------------->AGL15      ----------->GT1<---------ANAC58 --TOE2(3)  <---------CCA1(2)                 ----------------->AGL1    <------------CBF <---------ANAC58   attttagtcaacccgtttctttaaattcttgttgttttaagaagttttgcattattaggtacttctttgcgaaaaattgttaaattgtctttcttggctc  8313100                                                 <---------ANAC58                                          <----------DOF2                                           <                                       --------->ARR11(3)                                           -                                 <------ZmHOX2a(1)                                                 <-                                --------->ICU4<-----------GT1                                      <-                     <---------TOE2(2) <---------ARR11(3)      <---------LBD16                    ---                     <---------TOE1(2)<------MYB46(1)<---------ANAC46             --------->At4g35610                   --------->TOE2(2)  <------MYB83   <---------ANAC58             <---------At4g35610       --------->AHL20(2)      <---------TOE2(3) <---------ANAC58        ---------->DOF2 <---------At4g35610 --------MYB52(1)  --------->TOE1(2) --------->MYB59 <---------ANAC58---------->DOF2     --------->At4g35610   agtttgttttaaaatagaaaacctaggtatagtaaggattaggtctttttagcttgcttgcgactctcggagaaagaaagggtgagctctctgctaaatt  8313200              <---------RAP2.6(2)      --------->ZAT2      <---------ZAT2     --------->ANAC58     --------->ANAC58                                                  <------------CBF  <------NtERF2  <---------ANAC58                           --------->ARR14(2)                     -- ------>NtERF2<---------DEAR3(1)                            <---------ARR14(2) ----------->GT1     <- ---------ATERF1(2)                                    --------->MYB52(1)    ---------->DOF2     ---- -------->ATERF1(2)                                   <<<<<<<<<GT-2   --------->ATHB12<---------AHL20(2) --------ANAC58 <------NtERF2   <---------CCA1(2)     <-----------GT1<---------YAB1   --------->AHL20(2) --------ANAC58<---------DEAR3(2)                 <---------YAB1 <---------TOE2(3)   --------->AHL20(2) ------>At4g35610<---------ANAC58          --------->YAB1<---------MYB59<---------WOX13(1)--------->YAB1   tgctggcaagcttgggtcggcttgctctctctccatctctcgctctcatattctaattaccgaatttgatgttgattgacaaagttatttaatcacaagt  8313300                                                                                             --------                                                                                             ------>NtERF2                                                                                            <--------                            <---------ANAC58           <---------LBD16                      <--------         <---------TOE2(3)  <---------ANAC58          --------->MYB52(1)                   <---------LBD16   <---------AHL20(2)    <-----------GT1   --------->ALFIN1                              <---------ARR14(2)   <---------YAB1    <---------MYB52(1)  <---------ANAC46                                --------->ARR14(2) --------->GT1  <------MYB46(1)          <---------ANAC58                       <----------DOF2 --------ANAC46 <------MYB83<---------ANAC46         <---------SPL7         <---------ARR11(3) ----->ZAT18   --------->MYB59           <---------ANAC58--------->LBD16    --------->ARR11(3)      <   gctgtataattagggattaggtcgttttttccttgtagctatggagtggagaagccttccggtggaattgcaagaagagatactttctagggttccggct  8313400                                                                                         ---------->DOF2          --------->ATHB12                                                              <---------MYB52(2)         <---------YAB1                             --------->TOE1(2)                   --------->MYB46(3) ->LBD16 --------->ANAC58             <---------HSFB2a(1)                             ----------->RAV1(1) -ANAC46 --------->ANAC58             --------->HSFB2a(1)                            <----------ID1 -RAP2.6(2)                           --------->ANAC58                        <---------At4g35610 ---------AHL20(2)<------ZmHOX2a(2)   --------->ANAC58              <xxxxxxxxxxxxxxxxsmallRNA(i)    <   aaatatttggcacgattgcgatcaacatcgaaacaatggaacgctctatcgaaaactgggagttttgctaagaagcactctgctaatgcaacaaaggagc  8313500                                                                                             ------>ZmHOX2a(2)                                                                                            <------ZmHOX2a(2)                                                                                            ---------                                                                                           --------->ARR11(3)                                                                                           <---------ARR11(3)                                                                                           <---------ARR14(2)                                                                                           <---------AGP1                   --------->GLK1(2)                      <---------ZAT14                  --------->ARR14(2)                  <---------GLK1(2)                       --------->ZAT18                 ===========       --------->YAB1                                     <---------ZAT18                 ===========      <---------YAB1                                    <---------GLK1(1)                 <------ZmHOX2a(1)    --------->YAB1<---------ARR14(2)              <---------AtLEC2                      --------->MYB59 ---------YAB1   <------ZmHOX2a(1)          --------->WOX13(1)                 <----------DOF2    ---   ctctgattatcatgttgaaggattctagggtttacttagcaagtgtcaatctccatggagttcacaacaacgttgctcaatcttttgagttaggatctcg  8313600                <---------ALFIN1             ------>ZmHOX2a(2)            <------ZmHOX2a(2)            --------->CCA1(2)            --------->ARR14(1)           --------->ARR11(3)           <---------ARR11(3)           --------->ARR14(2)           <---------ARR14(2)           --------->AGP1       ---------->DOF2    --------->TOE1(3)                                                     <---------ARR14(2)    --------->TOE2(3)                        <---------ANAC58             --------->ARR14(2)  ------->TEIL --------->LBD16               <---------ANAC46         <------ZmHOX2a(1) >GLK1(1)  --------->ARR11(1)                <---------ANAC58--------------->AGL15 ==================HOX2a_HOX2a        <-----------HVH21    <---------At4g35610 ===================HOX2a_HOX2a    <---------At5g28300     --------->At4g35610 --------->ANAC46 ------------>AtSPL8           <----------DOF2   <---------YAB1     <---------TOE2(3)   attgtaccttaaagatccgcacatttctaacgtctttcactgtgatggcttgttattgctctgctccattaaggagaatacactcgaggtttggaatcca  8313700             ----------->GT1                                                               --------->ANAC58        --------->ANAC58                                                            ------>ZmHOX2a(1)        --------->ANAC58                   --------->ANAC46                     --------->ARR14(2)    <------ZmHOX2a(1)             <---------At4g35610 <----------DOF2           <---------ARR14(2) --   --------->LBD16  --------->AHL20(2)     --------->ANAC58               <----------ID1   --------->ANAC58 <-----------RAV1(2)<---------AHL20(2)     --------->ANAC58             --------->YAB1 ------>ZmHOX2a(1) <---------LBD16<---------AHL20(2)<---------ZAT2 --------->YAB1        <---------YAB1----------->RAV1(2)   tgttcaggagaagccaagttaattaaacctagacacagctactacaaggaatcagacttttatgctcttggttatgacaacaaatcctcctgcaagaaat  8313800  Previous    Next  AGI:  At3g23255.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO68683.1); contains domain SSF52540 (SSF52540) Range:  from: 8311788    to: 8313093    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g23260.1    Description:  F-box family protein. Identical to Putative F-box protein At3g23260 [Arabidopsis Thaliana] (GB:Q9LTC3); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G21130.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD37944.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain F-box associated type 1 (InterPro:IPR006527) Range:  from: 8313341    to: 8314429    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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