Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                           <----------DOF2                                                                   <---------AHL20(2)                                                                  --------->AHL20(1)                                                                  <---------AHL20(1)                                                                  <---------AHL20(2)                                                              --------->AHL20(2)      <---------ARR11(3)                                      <---------AHL20(2)      --------->ARR11(3)                                  <---------RVE1(1)            <xxxxxxxxxxxxx -------->YAB1                                           <---------ARR11(3)            <---------AHL20(2) --------YAB1       ---------->DOF2                      --------->ARR11(3)         --------->ARR11(3) ----->YAB1       <---------AHL20(2)                --------->MYB52(1)<-----------GT1 --------->AHL20(2) -----AHL20(2) --------->AHL20(1)              --------->AHL20(2) --------->AHL20(2)<---------ARR11(3) ---->AHL20(2) <---------ARR11(3)    <---------ARR14(2)  <---------GLK1(2)        <---------TOE2(3)   tataataagaccttgaatatataaaagataaatgatacaaatatggcgattaaaaaacagatttttaatttatttctttattctaagatttaatagttta  8266200                                                                           <---------HSFB2a(2)                                                                           --------->HSFB2a(2)                                         --------->YAB1                   <---------LBD16                                        <---------ATHB12                --------->GLK1(2)                                      --------->WOX13(1)        --------->ZAT2                                   --------->AtLEC2             <---------ZAT2                                   --------->ANAC46             <---------At4g35610              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->YAB1--------->At4g35610            --------->CCA1(2)      --------->ANAC58            <---------ARR14(2)     xxxxxxxxxxxxxxx  <---------ARR11(3)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      --------->GLK1(1)  --------->ARR11(3)        <---------ATHB12     <---------AHL20(2)    <---------GLK1(1)    <-------- --------->YAB1 ---------->DOF2    --------->ANAC58       --------->MYB52(1)   <xxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxsmallRNA(si3)  --------->WOX13(1)    --------->AHL20(2)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   caaagatagtttggatataaaagtttagcaatcaaacatgcaatcacacatataataagttatcggagctgggaattctggaatagtatacaaattacag  8266300                                                                            --------->YAB1                                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                        <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                             --------->ANAC58                                                             --------->ANAC46            <-----------GT1                                                             --------->ANAC58       ------->MYC3                                                           <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          <------ZmHOX2a(1)--------->MYB46(3) <---------ANAC58        <----------DOF2         <----------DOF2        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxx xxxxx>smallRNA(si3)           <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <xxxxxxxxxxxxxxxxsmallRNA(si3) ---GT1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <----------DOF2   <-------TEIL    <-------MYC3  --- xxsmallRNA(si3)      --------->AtLEC2    ---------->ID1  <---------MYB59--------->WOX13(1)<---------ANAC58   gttccaactcctttgtgtttagccatgcagttttctttgcatttgtcttcttctttaggacctaagcaagtccatccatcagaacacgtttttgcttctc  8266400                                                                                            <--------                                                          --------->ANAC58                  <--------                                 <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                        --------->AHL20(2)                              --------->ANAC46            --------->ANAC46              <---------AHL20(2)                            <-----------GT1               --------->ANAC58              --------->AHL20(2)                        <---------AHL20(2)              <---------AtLEC2               --------->AHL20(2)                        --------->AHL20(2)              <---------ANAC58    <---------------AtSPL3    --------->YAB1     <---------AHL20(1)               <---------ANAC58    <---------------AtSPL8 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           --------->DAG2             --------------->AtSPL8 xxsmallRNA(si3)       <---------AHL20(2)       ---------->DOF2            ---------->DOF2  --------- --->ZmHOX2a(1)        --------->AHL20(2) ----------->RAV1(1)  --------->ICU4     <---------MYB59   ctactatcaaaaccaaaatatacaaattatttacaccaagaacacaacaaaaaagtttgcatgccatttttgcaagttaaagtaccaaaattaatatatc  8266500                               <---------------AGL15                               --------------->AGL15                              ----------->RAV1(2)                              ----------------->AGL1                                           <-----    --------->YAB1           --------->MYB52(1)                                          <---------ICU4 -AHL20(2)                  --------->RVE1(1) <----------ID1                            <---------YAB1 -AHL20(1)            --------->TOE2(3)    ----------->TGA1                      <---------ARR11(3) >AHL20(1)        <---------AHL20(2) >>>>>>>>>TBF1---------->DOF2                --------->ARR11(3)--   aaacaatgagaatgttttttttaatctaaaatacctgaagaagaaatgacgaaaaagacaactagtagcaatagaatagaagagttcttcatcatttttt  8266600                                                <-------GAMYB                                       ------------>CBF                         <----------DOF2       --------->ALFIN1                 --------->DAG2       <<<<<<<<<<<<<<<<<LFY         <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---------ANAC58  <---------AHL20(2)         <---------ARR14(2)        ----------->GT1         ----------->GT1                     ------    ----------->GT1     <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <------ZmHOX2a(1)             --------->ALFIN1 ------GT1    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       <---------TOE2(3)           --------->DAG2 ---->ZmHOX2a(1)---------->DOF2--------->ZAT6<---------ANAC58 --------->AHL20(2)    ---------->DOF2   cctagtttgtgaatactgaaaagtaggcttttaaaactagttacaatgggtgttgaacaaaggattaaatagttgaatccatttgataaaggtgttgaat  8266700                                                              <----------DOF2                                                           <-----------GT1        <---------TOE1(3)                                                 --------->TOE2(3)                <---------TOE2(3) <                        --------->DAG2        --------->MYB52(1)          <----------DOF2          --                       ---------->DOF2     --------->ANAC55(2)<---------------AGL15            >>>>>>                  ----------->GT1          <---------ANAC55(2)<---------DAG2     <-----------RAV1(2)-        <---------AHL20(2)      <----------DOF2 <---------bZIP60(1) --------------->AtSPL8---------->DOF2 ->TEIL--------->AHL20(2)   <---------WRKY12<---------MYB52(2)--------------->AGL15    <-----------TBP   ctaagtgtattaaatgaagttagaaaaaagtcaactttgttgaataagtaacgtcaagttttaactttattttgtactttagttcaggtttttaaagaaa  8266800            <---------AHL20(2)        --------->YAB1      <----------DOF2       <---------ATHB12     <---------DAG2   <---------AHL20(2)    <---------AHL20(2)                                             <----------DOF2   --------->AHL20(2)    <-----------GT1                                          <---------ALFIN1 ----------->TBP      <---------ICU4                                           --------->ANAC46 ---------AHL20(1)    --------->YAB1                                           --------->ANAC58 ------->AHL20(2)    <---------AHL20(2)                                        --------->ANAC58 >>>>GT-3b --------->AHL20(2)             <---------GLK1(2)                   ------->GAMYB       <-- -------->AHL20(1)   <---------YAB1 <----------DOF2<------------CBF          <---------ALFIN1     <--   aatatataaatcataaaatttgtataattactttatcactttcagattttaaacattgaaaactaaatccaaaaattcaacacaccacttctttttgata  8266900                                            <---------AHL20(2)                                        <---------ARR11(3)                                        --------->ARR11(3)                                  <---------AHL20(2)         <---------YAB1           --------->AHL20(2)       <---------ICU4            --------->ICU4                                   -------->HAHB4     <---------YAB1              <---------YAB1        ----------->GT1            --------->YAB1   --------->AHL20(2)          <--------HAHB4          --------->TOE2(3)         <---------YAB1  <---------YAB1               <---------ICU4         ----------->GT1        --------->AHL20(2)    <- --------DOF2              ----------->GT1  <---------YAB1                 ----------->GT1         -- -------DAG2          ---------->DOF2   <---------GLK1(2)                ---------->DOF2          <--   ctttattatttatgactgaattcagaaagtcgataattaatagatttttattgaaaacgtttaaaactgaattgagaaagttaataatagagatttagag  8267000                                                                       --------->AHL20(2)                                                                       <---------AHL20(2)                                                                      --------->AHL20(2)       <-----       --------->MYB46(3)                                         <---------AHL20(2)  <---------AHL20(1)     --------->MYB52(1)                                           --------->AHL20(2)  --------->AHL20(1) --------->GLK1(2)                                                --------->AHL20(1)  <---------AHL20(2) --------KAN4(1)                                                  <---------AHL20(1)  --------->AHL20(2) ------->KAN4(1)                   --------->ICU4             <---------AHL20(2)  <------ZmHOX2a(1) -------KAN4(2)       <----------DOF2 <---------YAB1          --------->AHL20(2)<---------TOE2(3)   -   aataatctaacgactagttagagacttttatttgggcataattcttggatgtattctctcttaattaataaatttaaaaatttaggaataaatttttctt  8267100  Previous    Next  AGI:  At3g23167.1    Description:  LCR39 (Low-molecular-weight cysteine-rich 39). Identical to Putative low-molecular-weight cysteine-rich protein LCR39 precursor (LCR39) [Arabidopsis Thaliana] (GB:P82754); similar to LCR40 (Low-molecular-weight cysteine-rich 40) [Arabidopsis thaliana] (TAIR:AT2G14935.1); contains domain PD683306 (PD683306) Range:  from: 8266225    to: 8266592    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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