Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                          --------->ZAT14     --------->ICU4     <---------ZAT18                                --------->GLK1(2) ---------ANAC46        --------->ZAT18                                ------->TEIL ---------->GT1     --------->ARR14(2)                              <---------ATHB12 -----NtERF2 --------->TOE1(2)    <---------ARR11(3)           -------->P                          <- ------DEAR3(1)     <---------ARR14(2)                      <---------ATHB12                       <- --ALFIN1   --------->MYB46(3)    --------->ARR11(3)       --------->ANAC58             <----------DOF2 >ZAT14    ------->TEIL <---------ZAT14                    --------->ANAC58            <---------DAG2   cggcgtaaaaatgaaccagcgagttctgcacaaacaaatctttcgcataacccatcttcacaatcaacccatgaatctgaatcccattacctttcgctct  8024100                                                               <---------ICU4                      ---------->DOF2                          --------->ATHB12             --------->ANAC46                                 <---------YAB1             --------->ANAC58                         --------->LBD16         --------->ANAC58                <---------LBD16 --------->GLK1(1)         --------->ANAC46          ------->TEIL      --------->HSFB2a(2)         --------->ANAC58      <-------MYC3     --------->GLK1(1)                        --------->MYB52(2)       <---------ALFIN1        ------->MYC3----------->GT1  --------->YAB1              <-------TEIL --------DAG2--------->ANAC58  <---------------AtSPL8<---------HSFB2a(2)    --------->YAB1 ---------DOF2<---------ATHB12<---------ANAC46  <---------GLK1(1)           <-----------GT1   gcttttcgcacacgcactcaatccaaaaggaaacgtgtacttatctggagaaatcccagaattcatcattcgaagaaataacaatatagcttcgttgcat  8024200                 ------>ZmHOX2a(1)             --------->ARR11(3)             --------->ARR14(2)             <---------ARR14(2)             <---------ARR11(3)            <---------GLK1(1)                                          <---------ALFIN1            <---------CCA1(2)        --------->ANAC46         <---------ZAT14            --------->GLK1(1) <---------------AtSPL8          --------->ZAT14         <-------TEIL         --------------->AtSPL8       <---------At5g28300     ---------->DOF2 <-----------RAV1(2)    ---------->DOF2                   <-----------GT1    <----------DOF2  <------   aacccagaagatgcatatcctcgaatcaaagaattgtacatgaaacaagttccatacgattcactgttctcaaacacttctttagcaaagctcaaacttt  8024300                                                                              --------->MYB52(1)                                                                             <---------SPL7                                                                           --------->At4g35610                                                                           <---------At4g35610                                                                      <---------ANAC46                    <---------ANAC58                           <---------ANAC58                    <---------ANAC58                           <---------ANAC58--------->SPL7      <---------MYB59                                --------->ICU4   <---------ANAC58     --------->ANAC58                                <---------YAB1   <---------ANAC58     --------->ANAC58--------->LBD16               <---------ICU4  <---------ANAC58    --------->ZAT18 <---------ANAC46              --------->ICU4   <---------ANAC58 ----DOF2   <-----------GT1                       <---------YAB1------>ZmHOX2a(1)   cacgagtacccaattcacaactccgtgctacaagcttagttatagtggagacatcattatcaagtccttgcttcgtgagcgaacgatgaaacattttgag  8024400                                             <---------ZAT14                                      <---------ANAC46                                      <---------ANAC58                                      <---------ANAC58                                    <---------MYB46(3)                                 <---------ANAC46                                        <---------RAP2.6(2)                                 <---------O2--------->ZAT18                             <---------ANAC46                                 <---------ANAC58                                     --------->ALFIN1                                 <---------ANAC58                                  <------NtERF2                                 <---------bZIP60(2)                       <---------ANAC58        --                    --------->DOF5.7(2)<----------DOF2                     <---------ANAC46     -----                   <----------DOF2 <------NtERF2                           <---------ANAC58<------NtERF2     <---------TOE2(3)<---------DOF5.7(2)    <---------ZAT18       --------->CCA1(2)<---------ANAC46   ttcgtctatggttttgcaattctttaacgacgatggcgtggctttggtacacttgctctggtttagaagagatggtttcgtagtcgtcgtggtggctaac  8024500                                                                        ---------->DOF2                                                                      <---------YAB1                                                                    --------->AHL20(2)                                                                    --------->YAB1                                                                   <---------YAB1                           ------>MYB83                       --------->TOE2(3)                          --------->ANAC46                    --------->YAB1                    -----                         --------->MYB46(3)                 <---------ARR14(2)              ---------                         <---------MYB59                    --------->ARR11(3)          <---------YAB1          --------->CCA1(2)------>MYB46(1)                  <-----------ARR10<-------TEIL--------->YAB1 ------->ATHB12         --------->ANAC46                    --------->ARR14(2)      <---------DAG2 ---->ZAT6--------->At4g35610         <-----------RAV1(1)   <---------ARR11(3)      <----------DOF2--   accattggagagagatgaagaacattacccaacatcgccattgttggctcttactgattcagtatcttaattataaaagttcgtcactttataatcaaaa  8024600                       <------MYB83                       <------MYB46(1)                       ----------->GT1                      --------->MYB59                                     --------->AHL20(2)                 <---------AHL20(2)                          <---------GLK1(2)                    --- ---->AHL20(2)   --------->AHL20(2)           <------------CBF  <---------ANAC55(2)     ------------- >YAB1          --------->AHL20(2)   --------->DAG2          --------->ARR14(2)       <------ZmHOX2a(1) ---------------------->ANAC81      ---------->DOF2          <---------ARR14(2)--------->MYB52(1) <--   aattcaaaaaaaaaaaaaaaaaatttggttacaaaaaaaaaagctctacattgttcataaacagatacttaagaaaaaaaataacagaggaccattactg  8024700                               <------------CBF                              -------->HAHB4                              <--------ATHB1                              <---------ICU4            --------->ANAC58  --------->ATHB51            --------->ANAC46  --------->ATHB12                                             ----------            --------->ANAC58 --------->ICU4                                              --------->ANAC46        ------>MYB46(1)      <---------YAB1                                              --------->ANAC58        ------>MYB83         <---------ATHB51                                            --------->ANAC58      <---------MYB59      --------->YAB1                                             <---------SPL7 ------>ARR14(2)        --------->YAB1                 <---------MYB52(1)        <---------TOE2(3)<-- ---->AGL2 <---------LBD16<---------YAB1             <---------ZAT6              <---------TOE1(3)--- -------ARR14(2)    --------->MYB52(1)         --------------->AGL15<----------DOF2 <---------------AtSPL3   gatttgaaccaaactcggaacataactgataataattgaatgccattttctattactgttaagtagaactctttgtatgtttaaaggttgtacgaaaggg  8024800                                                              --------->YAB1                                                           --------->TOE2(3)                                                          --------->ATHB12                                                          <---------ICU4                                                          <--------HAHB4                                                         --------->ICU4                                                         <---------YAB1                                                       --------->YAB1                                                      <---------YAB1          ----------->RAV1(1)    ----------->TBP                               ------>ZmHOX2a(2)     --------->ZAT6 >DOF2                                          <---------ARR11(3)     <---------TOE2(3) -------GLK1(1)                                 <-----------ARR10     <-----------GT1 ------>GLK1(1)   ------>ZmHOX2a(1)             --------->ARR11(3)  --------->AHL20(2)     <---------   atttctatatatccatcgtcctctccgataatgtataccatgttcttgctgatcttatcatcattaacaatttaacattacaacacaagacgactttctt  8024900                                      --------->AHL20(2)                           <-------TEIL---------->DOF2                          --------->ARR14(1)                          --------->CCA1(2)                         --------->ARR11(1)     --------->ANAC46    --------->ARR14(2)    --------->LBD16      <---------ARR14(2)                       --------->ANAC46    ------>ZmHOX2a(1)   <---------HSFC1(2)                      --------->ANAC46    <---------HSFB2a(2) --------->HSFC1(2)              <---------ZAT18                           XXX    --------->HSFB2a(2) --------->HSFB2a(1)             --------->ZAT14                         <---- ------>ZmHOX2a(1)      <---------HSFB2a(1)             --------->ZAT18                    <---------YAB1 -DOF2                 ----------->ARR10                <---------ZAT14              <---------YAB1   ctcctcctcgaaatagagacttgagaagattcgaacacaattaaagcgagtgtctaagtgcagtctccacaacaatgtagcatcagtatcaatgttattg  8025000  Previous    Next  AGI:  At3g22690.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G29760.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71209.1); contains InterPro domain Protein of unknown function DUF1685 (InterPro:IPR012881); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 8020764    to: 8024541    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g22700.1    Description:  F-box family protein. similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G22720.1); similar to Os09g0479100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063476.1); similar to hypothetical protein OsJ_028608 [Oryza sativa (japonica cultivar-group)] (GB:EAZ45125.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain F-box associated type 1 (InterPro:IPR006527) Range:  from: 8024805    to: 8025821    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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