Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                          ------>ZmHOX2a(2)                       --------->CCA1(2)                       <------ZmHOX2a(2)                      <---------AGP1                      <---------ARR11(3)                      --------->ARR14(2)                      <---------ARR14(2)                      --------->ARR11(3)        --------->YAB1                      --------->AGP1         --------->YAB1                    ----------->ARR10       <---------YAB1                 --------->TOE2(3)        <---------ICU4                --------->ATHB12          --------->YAB1            <---------ZAT6               <---------YAB1--------->AHL20(2)<---------YAB1       ----------->GT1             <---------GLK1(1)           --------->ICU4      --------->AHL20(1)             --------->GLK1(1)           <---------YAB1      <---------AHL20(1)            --------->ARR11(3)      ----------->GT1<---------ARR14(2)                           ----- -----ATHB12<---------ARR11(3)      <---------ZAT6 --------->ARR14(2)                 --------->YAB1   gaagtttttgatcagatatcattagatctgataaaatagtgttattattatcatatactcatatatattagtgtaataacttacacaatgagattataca  7308600                               <----------ID1                        --------->GLK1(2)                  --------->YAB1                                         ------>ZmHOX2a(1)                 <---------YAB1<------ZmHOX2a(1)                   <---------ARR11(3)         --------->MYB52(2)  --------->ANAC46                      --------->ARR11(3)     ----------->GT1   <---------GLK1(2)--------->YAB1     ----------->GT1                      ----- ---->TOE2(3)  --------->YAB1<---------TOE2(3)    ---------->DOF2 <---------CCA1(2)     <------ZmHOX2a(1)   tcaaaatgggttatttgtcatcatagattctaaggaacaaaatcagaacaaaaaaagagttttgttatatatctccttctcatattttgaggactcttgt  7308700                                                                   --------->ANAC58                                                                   --------->ANAC58                                                           --------->MYB52(1)                                                          --------->AtMYB61                                                          ------->GAMYB                                                          <---------ALFIN1                                                         <---------MYB52(2)                                                         <---------MYB55(2)                  ------->PIF5                                                         <---------MYB111(2)                ---------                                                         --------->MYB46(3)             --------->ANAC58                                                        ------>MYB83                    --------->ANAC58                                                        ------>MYB46(1)               <------ZmHOX2a(1)                                                        -------->P--------->DAG2   <------NtERF2                                         --------->At4g35610     ---------->DOF2   <---------At4g35610                                     <---------REM1(1)--------->DEAR3(1)           --------->At4g35610                             <------NtERF2           --------->ATERF1(1)    <---------MYB46(3)      <                           <---------ANAC46----------->RAV1(1)--------->LBD16   <------NtERF2<-------PIF5 ----->ID1                <---------LBD16<---------At4g35610<---------LBD16--------->ALFIN1------->TEIL   ctttctactgcaagagaagagccaagaaggcggagagtgatgcagcaacaatggagccaaccaccggaaaagctacggtggaggcagaggaagcacctgg  7308800                                      --------->ZAT18                                    --------->ZAT2                                    <---------At4g35610                                    <---------ZAT2                                    --------->At4g35610                             <---------ARR14(2)                            <------NtERF2                           --------->LBD16                          <------NtERF2                                                        <-----                          <---------ANAC46          <------NtERF2                         --------->ATHB51                         <---------LBD16        --------->DEAR3(1)                 <---------At4g35610                         --------->LBD16 <---------MYB52(2)                        --------->At4g35610                         --------->At4g35610   --------->ANAC58          --------->ARR11(3)    <-----                         ------>NtERF2<---------ZAT18    ---------->DOF2 <---------ARR11(3)    <----- -->RAV1(2)             --------->DEAR3(1)     --------->ANAC46      ---------->DOF2      <---------ICU4 ---------AtMYB61      --------->ATERF1(1)     --------->ANAC58   ----------->RAV1(1)    <---------MYB52(1)   tgatggtgctggagactccattgtagccgcggagactgagctcactaacacggccgagataaagagggccacaaagatgttcttcatctccattatttct  7308900                                        <-------GAMYB                                       <---------MYB46(3)                                     -------                                       --------->MYB55(2)                                     <------                                     <---------ANAC58                                    ----------->GT1                                     <---------ANAC58               *TSS                --------->ANAC58          ---------->ID1             <-------GAMYB       <---------ANAC58               --------->ANAC58       <------------------------ANAC81 --------->MYB111(2)         ------->TEIL     <------NtERF2 ----ANAC58            <------------------------ANAC81   <---------ANAC58         --------->ALFIN1 ----ANAC58    <------------------------ANAC81           <-------GAMYB         <---------AtMYB61 -------------------ANAC81          <---------MYB46(3)  <---------MYB46(3)  --------->ALFIN1 <-------   tgttttttttttgtttttttttttggttttttgttttttggttgttgttttgtatttttggttgtgatgcatttgaaggtgaaggtggggaaggaatata  7309000                                                                                                 ----                                                                                                 <---                                                                                    --------------->AGL15                                                                                    <---------------AGL15      <---------AHL20(2)                                                           <-----------------AGL2      --------->AHL20(2)                                                           <-----------------AGL3      --------->AHL20(1)                                                           ==================      <---------AHL20(1)                                                           ----------------->AGL3   --------->YAB1                                                                <-----------GT1 ----  <---------YAB1                          --------->AtLEC2          <-----------GT1----------------->AGL2 -->ARR11(3)                       <------------CBF               <---------HSFB2a(1)            <--- ---ARR11(3)                    ------>NtERF2                     --------->HSFB2a(1)      <---------TOE2(3) ----TBP                    <---------ARR11(3)      <------ZmHOX2a(1)      <---------AHL20(2)<------ZmHOX2a(1)   tactataataaaatgtagagagagtttcaagctctgccattgatatgcaaaacaggagaattcaaagaattttctatttttttttactaaatttaggaat  7309100                                                                                  <---------YAB1-----           --------->YAB1                                                       <---------------AGL15          <---------ATHB51                                                      --------------->AGL15          <---------ATHB12   --------->ICU4                                     <---------AHL20(2)          --------->ICU4 --------->At5g28300                             --------->GLK1(2)      <---- <-------TEIL --------->AHL20(2)                                         <---------ARR11(3)    <----- ----->AHL20(2)         ----------->GT1                                  --------->ARR11(3)    ====== ------AHL20(1)       --------->At4g35610                               <---------GLK1(2)  ---------- ===============================================================================================MADS_MADS ----->AHL20(1)       <---------At4g35610                    --------->AHL20(2)<-----------------AGL1 ------AHL20(2)      <---------AGP1<---------YAB1            <---------AHL20(2)<-----------------AGL2   aaattcatggcaataataaactagagctgtaatttttctgataagtttgaattggtctcagaataaaatagaaagaatctttttatttttggcaaaagga  7309200                                                                                             <-------     --------->ZAT18                                                                        <--------     --------->ETT(2)                                                        --------->ARR14(2)     <---------WRKY38(1)   ---------->DOF2                              --------->ZAT14  <---------YAB1 ---->ARR11(3)           <---------HSFB2a(2)                            <---------ZAT14  <---------AHL20(2) -----ARR11(3)           --------->HSFB2a(2)                       <----------DOF2      --------->YAB1 -ZmHOX2a(1)       <---------ARR11(3)                         --------->ANAC58          --------->AHL20(2) ==================HOX2a_HOX2a                <---------YAB1  --------->ANAC58          <---------AHL20(1) >DOF2      <------ZmHOX2a(2)    ---------->DOF2            ---------->DOF2  <---------ARR14(2)   tttttggtccacagatcacatggtcttctaaaagaaaaagactaaattgtgatgagaaacaaataagcactttgtgtagtatttgcccaatattattatt  7309300                                                                                 <---------AHL20(2)                                                                                 --------->AHL20(2)                                                                                --------->YAB1                                                                   --------->KAN4(2)                                                                  --------->KAN4(1)                                      <---------ANAC46            <---------KAN4(1)    --------->AHL20(2)                ----------->GT1            <---------KAN4(2)  --------->AHL20(2)            --------->AHL20(2)   <---------ZAT14    <----------DOF2 --AHL20(2)                     <---------AHL20(2)   --------->ZAT14<-----------GT1             <---- -YAB1             ----------->HVH21  <---------ANAC55(2) ---------->DOF2       --------->AHL20(2)   tgaaaaaaatatagatttagagtgacatttgttataaattatgtgaaaactctagtttactaaagagattattccttttgaattaaaatgaatagtcaga  7309400                                                                                          --------->TGA2(1)                                                                                       ----------->HVH21                                                                                      <-------MYC3                                                                              <---------ICU4                                                                              --------->ATHB12                                                                              --------->ATHB51                                                                              --------->YAB1                                                                              -------->ATHB1                                                                              <--------ATHB1                                                                             <---------ATHB12                                                                             <---------ATHB51                                                                             --------->ICU4   -------                                                                             <---------YAB1 ---------                                                                           --------->WOX13(1)<-------                                       --------->ZAT14                    ------------>ATHB5<--------                        --------->CCA1(2)     --------->LBD16           --------->ANAC58  <---------bZIP60(1)                       --------->ARR14(2)   --------->ZAT14             --------->ANAC58  <---------TGA2(1)                       <---------ARR14(2)   <---------ZAT14           --------->ATERF1(1) --------->bZIP60(1)        --------->GLK1(1)  ---------->DOF2--------->ANAC46        <---------LBD16 <---------ZAT18        <---------GLK1(1)<-------TEIL  <---------ZAT18         <----------DOF2<------------ATHB5 -----GLK1(2)   <----------DOF2        <---------ZAT14    <-----------GT1<------NtERF2------->MYC3   ttgtttacagatttcagtctttacagatacaaagagactacttcactccagagactgatttatctctttgggggaggcaattattgcacatgacatcatt  7309500  Previous    Next  AGI:  At3g20865.1    Description:  AGP40 (ARABINOGALACTAN-PROTEIN 40) Range:  from: 7308510    to: 7308968    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g20870.1    Description:  metal transporter family protein. similar to metal transporter family protein [Arabidopsis thaliana] (TAIR:AT3G08650.1); similar to metal transporter family protein [Arabidopsis thaliana] (TAIR:AT3G08650.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO21935.1); contains InterPro domain Zinc/iron permease; (InterPro:IPR003689) Range:  from: 7309285    to: 7312758    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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