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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                        --------->ICU4
                                                        <---------YAB1
                                                      <---------ICU4
                                                     <---------ATHB12
                                              --------------------->WRI1
                                          --------->ANAC58
                                          --------->ANAC46                                   <------
                                          --------->ANAC58                                <---------MYB52(1)
                                          <---------ANAC55(2)                           <------MYB46(1)
                                          --------->ANAC55(2)                           <------MYB83
                                         <-------TEIL--------->ICU4             <---------At4g35610
                                        --------->CCA1(2)                       <---------ZAT2
                                        --------->ARR14(1)                      --------->ZAT2
      ------>MYB83                     --------->ARR11(1)                       --------->At4g35610
-->ZAT6                                <---------ARR14(2)<---------ICU4      <---------ANAC58<------
>MYB52(1)                              --------->ARR14(2)--------->ATHB12    <---------ANAC58<------
---GT1------>MYB46(1)                ----------->ARR10--------->YAB1     ---------->DOF2<---------DEAR3(2)
 
ttcaaaaccaatctctcgactctatgttcaaaaatcagtatagatacggcattgtaatcatcattgtatatatacctatagcgagcagagtcggtttctt  7208000
           <---------HSFB2a(2)                                                                    --
           --------->HSFB2a(2)                                                                    --
      <------ZmHOX2a(2)                                                                       ------
      ==========================HOX2a_HOX2a                                               ------>ZmHOX2a(1)
     <---------ARR14(2)                                                      --------->ANAC58 ------
     --------->ARR14(2)                                            --------->YAB1       <---------ICU4
---ANAC46 <---------LBD16      <---------At4g35610    --------->GLK1(1)      --------->ANAC58<------
---ANAC58------>ZmHOX2a(1)     --------->At4g35610    <---------GLK1(1)      --------->ANAC46-------
---ANAC58<---------LBD16 ------>ZmHOX2a(1)   --------->CCA1(2)    <---------YAB1  --------->YAB1----
 
gagaggccgatcctcgggaatagacttcctagtctgcttaatatgaagataaacagggtttccagtcttctcatagttccaagaaacataatccttcccg  7208100
                                         ------>ZmHOX2a(2)
                                        <------ZmHOX2a(2)
                                        <---------GLK1(1)
                                        --------->GLK1(1)
                                       <---------AGP1
                                       --------->ARR14(2)
                                       <---------ARR11(3)
                                      <---------CCA1(2)
                                  =============HOX2a_HOX2a
                                  ==============HOX2a_HOX2a
                                  ------>ZmHOX2a(1)   <---------ICU4
  --------->ANAC58             =================HOX2a_HOX2a
  --------->ANAC58             ------>ZmHOX2a(1)      --------->ATHB12
------->ANAC58           --------->MYB46(3)          --------->ICU4
------->ANAC58           --------->HSFB2a(1)         <---------YAB1
--->LBD16                <---------KAN4(1)         <---------ICU4
--->ANAC46            ------->GAMYB<---------LBD16 --------->YAB1        ------------------------>ANAC81
---HSFB2a(2)         <---------MYB52(2)--------->ARR11(3)     <---------ARR14(2)
-->HSFB2a(2)         --------->MYB46(3)<---------ARR14(2)  <---------ANAC58
------>DOF2  --------->YAB1    ================HOX2a_HOX2a <---------ANAC58
 
aaagcaagaaaactattcatatcaacgaacaatcctccttcggatctctgaaaatcatcattgcgaattcatcaaaaccgaagaaaacgagagaagagtc  7208200
                                                                            <---------ANAC46
                                                                          <---------YAB1
                                                                        --------->YAB1             <
                                                                    <---------ALFIN1              <-
                                                             --------->GLK1(1)                 <----
                                               --------->LBD16    ----------->RAV1(1)          <----
                                             <---------LBD16 --------->At4g35610         --------->ICU4
                                           <---------WRKY18(1)  <-------TEIL<---------ANAC58  ------
                 >>>>>>>>>TBF1           <----------DOF2   <------ZmHOX2a(1)<---------ANAC58  ------
 
gagagtagtcggaatttgaagaagaaaacgaagtgagagagaggctttaccggagtatcgaaggagatgcaacactcatgcttgtagatgcgatgagtag  7208300
      ------>ZmHOX2a(2)
      ==================================HOX2a_HOX2a
     ===================================HOX2a_HOX2a
     <------ZmHOX2a(2)
     --------->At4g35610
     <---------At4g35610
    <---------ARR14(2)
    <---------ARR11(3)                                                        --------->ETT(2)
    --------->ARR11(3)             --------->At4g35610                        <---------TGA1a
    --------->ARR14(2)             --------->GLK1(1)               <---------GLK1(2)
-----------RAV1(2)                 <---------GLK1(1)             --------->ANAC58
------TEIL                         <---------At4g35610           --------->ANAC58            -------
--MYB83                          <------ZmHOX2a(1)             ---------->DOF2<---------ETT(2)
--MYB46(1)                  ------>ZmHOX2a(2)                  =========================bZIP_DOF <--
--->MYB111(1)             <---------ARR14(2)            --------->ARR14(2) ----------->HVH21--------
--->MYB59 ------->TEIL    --------->ARR14(2)           <---------ARR14(2)  ----------->TGA1 <-------
 
gttcagggatctgaaccctagacaagttggatcggaggagctccatagggtttttgcgaaatcggcgaaagaaactctctgacgacggagagacagatat  7208400
                 --------->ANAC46
                 --------->O2
                 --------->ANAC55(2)           --------->ANAC58
                 --------->ANAC58              --------->ANAC58
                 ===============MYC_MYB       <-------TEIL
                 --------->ANAC55(1)        <---------SPL7
                 --------->TGA1a           --------->HSFC1(2)
                 <---------O2              <------MYB46(1)
          <---------bZIP60(1)              <------MYB83
       *TSS      <---------TGA1a           <---------HSFC1(2)
      <---------WOX13(1)                   <---------HSFB2a(1)
     <---------ANAC58                     <---------------AtSPL8                                 <--
     <---------ANAC46    <---------MYB52(1)--------->HSFB2a(1)                               <------
     <---------ANAC58   <-------GAMYB     <---------------AtSPL3                             -------
<---------MYB46(3)     --------->ANAC46   --------->MYB59         --------->ATERF1(1)        <------
-->CCA1(2)--------->bZIP60(1)         --------->ANAC46            <------NtERF2              <------
---------RAV1(1) --------->ANAC58     --------->ANAC58      <---------HSFC1(2)         <---------YAB1
->ARR14(2)--------->TGA2(1)           --------->ANAC58<---------YAB1    ------>ZmHOX2a(1)<----------
--ARR14(2)<---------TGA2(1) --------->REM1(1)--------->CCA1(2)  <---------DEAR3(1) <----------DOF2
 
gtgttgttgagtgatatcacacgtctccgttacaacttaacaaggaaggtacggatgatgagaaacgtcgtcgtccttctaaattcctttcttattgcct  7208500
                                                               <---------DAG2
                                                               <----------DOF2
                                                             ------>MYB83
                                                             ------>MYB46(1)
                                                           ------->GAMYB
                                                        <---------DOF5.7(2)
                                                      --------->DOF5.7(2)
                                                      <---------MYB52(1)
    <---------LBD16                                  --------->TOE1(3)
   <---------ANAC46                                  --------->TOE2(3)  <------MYB46(1)            <
<---------ARR14(2)                              <---------HSFB2a(1)     <---------ANAC46           <
-------TOE2(3)                <---------MYB46(3)--------->HSFC1(2)      <------MYB83        <-------
---ANAC46                 --------->DAG2        <---------HSFC1(2)      ----------->GT1     --------
---->RAV1(2)        --------->DAG2              --------->HSFB2a(1)<-----------RAV1(1)--------->ARR11(3)
---ANAC58          ---------->DOF2 ----------------->AGL1 <------------MYB.PH3(1)     <---------ARR11(3)
---ANAC58         <---------ATHB12 <-----------------AGL1 --------->DEAR3(2)          <---------AHL20(1)
--CBF   ----------->ARR10---------->DOF2  <---------LBD16 --------->MYB46(3)          --------->AHL20(1)
 
gaggttttggggagaattgcaataaagcaaaagttgttgtcaatttggggaaatttcgttaaccgactttttgttgggttaattttgaaaatattctaaa  7208600
                                                                                             <------
               <-------TEIL  <---------------AtSPL3                                       <-------MYC3
              --------->CCA1(2)                                                           ------->MYC3
 <------ZmHOX2a(1)           <---------------AtSPL8                                <---------WRKY18(1)
---------TOE2(3)     ---------->DOF2                                              ----------->HVH21
---------TOE1(3)  --------->ANAC46                                               <---------WOX13(1)
--------AGL15--------->ARR14(2)                          --------->ANAC46      --------->ATHB12    <
------->AGL15<---------ARR14(2)                        <-----------GT1        <---------AHL20(2)  --
 
ttaaggatagagtttggatacacaaaaagaatattgtacagcccattagagtttgtatttacccaatagacccaagactatttgattgacccatatgcat  7208700
                                                                                               <----
                                        >>>>>>>>>>>>>>>>>LFY                                   -----
                                    <-----------RAV1(1)                                       ------
             ---------->DOF2   --------->YAB1                                                 <-----
---AtLEC2------->TEIL   --------->TOE2(3)                                --------->ANAC58     <-----
---------REM1(1)        --------->TOE1(3)             <-----------GT1    --------->ANAC46     ------
----->TEIL --------->YAB1  ---------->DOF2   <-----------RAV1(1)         --------->ANAC58    <------ZmHOX2a(1)
 
ggatgtagaatgaatcaaaagaagaaaccataaatcacaatgtggccaatgtgggttttacatgttcttgttcaacacgaaaattactaagtgtgaggat  7208800
                                                                                           ---------
                                                                                      <---------ANAC58
        <---------YAB1                                                                <---------ANAC58
     <---------YAB1                                                                ------->TEIL
-----GLK1(1)                                                                 <---------AHL20(2)
---->GLK1(1)                                                                 <---------AHL20(1)
--->ARR11(3)                   --------->ALFIN1                              --------->AHL20(1)
----ARR11(3)                --------->DAG2                     ---------->DOF2--------->CCA1(2)
----ARR14(2)              ---------->DOF2           --------->DAG2     --------->ANAC55(2)<---------YAB1
--->ARR14(2)     ----------->GT1<---------MYB46(3) ---------->DOF2  <-------TEIL<---------YAB1
 
atcgtttgatgatttttgaaatgaaaaaaaaaaggtggatgtctactcttgggaaaaagaggtattcaaagttcatgtaatatatgaatgcttatgattt  7208900
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AGI:  At3g20630.1   
Description:  UBP14 (UBIQUITIN-SPECIFIC PROTEASE 14); ubiquitin-specific protease. Identical to Ubiquitin carboxyl-terminal hydrolase 14 (UBP14) [Arabidopsis Thaliana] (GB:Q8L6Y1;GB:Q0WV77;GB:Q9FPT0;GB:Q9LJT6); similar to hypothetical protein OsI_000605 [Oryza sativa (indica cultivar-group)] (GB:EAY72758.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39183.1); similar to hypothetical protein OsJ_000581 [Oryza sativa (japonica cultivar-group)] (GB:EAZ10756.1); contains InterPro domain Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940); contains InterPro domain Zinc finger, UBP-type; (InterPro
Range:  from: 7202779    to: 7208408    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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