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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
ICU4
<---------
YAB1
<---------
ICU4
<---------
ATHB12
--------------------->
WRI1
--------->
ANAC58
--------->
ANAC46
<------
--------->
ANAC58
<---------
MYB52(1)
<---------
ANAC55(2)
<------
MYB46(1)
--------->
ANAC55(2)
<------
MYB83
<-------
TEIL
--------->
ICU4
<---------
At4g35610
--------->
CCA1(2)
<---------
ZAT2
--------->
ARR14(1)
--------->
ZAT2
------>
MYB83
--------->
ARR11(1)
--------->
At4g35610
-->
ZAT6
<---------
ARR14(2)
<---------
ICU4
<---------
ANAC58
<------
>
MYB52(1)
--------->
ARR14(2)
--------->
ATHB12
<---------
ANAC58
<------
---
GT1
------>
MYB46(1)
----------->
ARR10
--------->
YAB1
---------->
DOF2
<---------
DEAR3(2)
ttcaaaaccaatctctcgactctatgttcaaaaatcagtatagatacggcattgtaatcatcattgtatatatac
ctatagcgagcagagtcggtttctt
7208000
<---------
HSFB2a(2)
--
--------->
HSFB2a(2)
--
<------
ZmHOX2a(2)
------
==========================
HOX2a_HOX2a
------>
ZmHOX2a(1)
<---------
ARR14(2)
--------->
ANAC58
------
--------->
ARR14(2)
--------->
YAB1
<---------
ICU4
---
ANAC46
<---------
LBD16
<---------
At4g35610
--------->
GLK1(1)
--------->
ANAC58
<------
---
ANAC58
------>
ZmHOX2a(1)
--------->
At4g35610
<---------
GLK1(1)
--------->
ANAC46
-------
---
ANAC58
<---------
LBD16
------>
ZmHOX2a(1)
--------->
CCA1(2)
<---------
YAB1
--------->
YAB1
----
gagaggccgatcctcgggaatagacttcctagtctgcttaatatgaagataaacagggtttccagtcttctcatagttccaagaaacataatccttcccg
7208100
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
<---------
GLK1(1)
--------->
GLK1(1)
<---------
AGP1
--------->
ARR14(2)
<---------
ARR11(3)
<---------
CCA1(2)
=============
HOX2a_HOX2a
==============
HOX2a_HOX2a
------>
ZmHOX2a(1)
<---------
ICU4
--------->
ANAC58
=================
HOX2a_HOX2a
--------->
ANAC58
------>
ZmHOX2a(1)
--------->
ATHB12
------->
ANAC58
--------->
MYB46(3)
--------->
ICU4
------->
ANAC58
--------->
HSFB2a(1)
<---------
YAB1
--->
LBD16
<---------
KAN4(1)
<---------
ICU4
--->
ANAC46
------->
GAMYB
<---------
LBD16
--------->
YAB1
------------------------>
ANAC81
---
HSFB2a(2)
<---------
MYB52(2)
--------->
ARR11(3)
<---------
ARR14(2)
-->
HSFB2a(2)
--------->
MYB46(3)
<---------
ARR14(2)
<---------
ANAC58
------>
DOF2
--------->
YAB1
================
HOX2a_HOX2a
<---------
ANAC58
aaagcaagaaaactattcatatcaacgaacaatcctccttcggatct
ctgaaaatcatcattgcgaattcatcaaaaccgaagaaaacgagagaagagtc
7208200
<---------
ANAC46
<---------
YAB1
--------->
YAB1
<
<---------
ALFIN1
<-
--------->
GLK1(1)
<----
--------->
LBD16
----------->
RAV1(1)
<----
<---------
LBD16
--------->
At4g35610
--------->
ICU4
<---------
WRKY18(1)
<-------
TEIL
<---------
ANAC58
------
>>>>>>>>>
TBF1
<----------
DOF2
<------
ZmHOX2a(1)
<---------
ANAC58
------
gagagtagtcggaatttgaagaagaaaacgaagtgagagagaggctttac
cggagtatcgaaggagatgcaacactcatgcttgtagatgcgatgagtag
7208300
------>
ZmHOX2a(2)
==================================
HOX2a_HOX2a
===================================
HOX2a_HOX2a
<------
ZmHOX2a(2)
--------->
At4g35610
<---------
At4g35610
<---------
ARR14(2)
<---------
ARR11(3)
--------->
ETT(2)
--------->
ARR11(3)
--------->
At4g35610
<---------
TGA1a
--------->
ARR14(2)
--------->
GLK1(1)
<---------
GLK1(2)
-----------
RAV1(2)
<---------
GLK1(1)
--------->
ANAC58
------
TEIL
<---------
At4g35610
--------->
ANAC58
-------
--
MYB83
<------
ZmHOX2a(1)
---------->
DOF2
<---------
ETT(2)
--
MYB46(1)
------>
ZmHOX2a(2)
=========================
bZIP_DOF
<--
--->
MYB111(1)
<---------
ARR14(2)
--------->
ARR14(2)
----------->
HVH21
--------
--->
MYB59
------->
TEIL
--------->
ARR14(2)
<---------
ARR14(2)
----------->
TGA1
<-------
gttcagggatctgaaccctagacaagttggatcggaggagctccat
agggtttttgcgaaatcggcgaaagaaactctctgacgacggagagacagatat
7208400
--------->
ANAC46
--------->
O2
--------->
ANAC55(2)
--------->
ANAC58
--------->
ANAC58
--------->
ANAC58
===============
MYC_MYB
<-------
TEIL
--------->
ANAC55(1)
<---------
SPL7
--------->
TGA1a
--------->
HSFC1(2)
<---------
O2
<------
MYB46(1)
<---------
bZIP60(1)
<------
MYB83
*
TSS
<---------
TGA1a
<---------
HSFC1(2)
<---------
WOX13(1)
<---------
HSFB2a(1)
<---------
ANAC58
<---------------
AtSPL8
<--
<---------
ANAC46
<---------
MYB52(1)
--------->
HSFB2a(1)
<------
<---------
ANAC58
<-------
GAMYB
<---------------
AtSPL3
-------
<---------
MYB46(3)
--------->
ANAC46
--------->
MYB59
--------->
ATERF1(1)
<------
-->
CCA1(2)
--------->
bZIP60(1)
--------->
ANAC46
<------
NtERF2
<------
---------
RAV1(1)
--------->
ANAC58
--------->
ANAC58
<---------
HSFC1(2)
<---------
YAB1
->
ARR14(2)
--------->
TGA2(1)
--------->
ANAC58
<---------
YAB1
------>
ZmHOX2a(1)
<----------
--
ARR14(2)
<---------
TGA2(1)
--------->
REM1(1)
--------->
CCA1(2)
<---------
DEAR3(1)
<----------
DOF2
gtgttgtt
gagtgatatcacacgtctccgttacaacttaacaaggaaggtacggatgatgagaaacgtcgtcgtccttctaaattcctttcttattgcct
7208500
<---------
DAG2
<----------
DOF2
------>
MYB83
------>
MYB46(1)
------->
GAMYB
<---------
DOF5.7(2)
--------->
DOF5.7(2)
<---------
MYB52(1)
<---------
LBD16
--------->
TOE1(3)
<---------
ANAC46
--------->
TOE2(3)
<------
MYB46(1)
<
<---------
ARR14(2)
<---------
HSFB2a(1)
<---------
ANAC46
<
-------
TOE2(3)
<---------
MYB46(3)
--------->
HSFC1(2)
<------
MYB83
<-------
---
ANAC46
--------->
DAG2
<---------
HSFC1(2)
----------->
GT1
--------
---->
RAV1(2)
--------->
DAG2
--------->
HSFB2a(1)
<-----------
RAV1(1)
--------->
ARR11(3)
---
ANAC58
---------->
DOF2
----------------->
AGL1
<------------
MYB.PH3(1)
<---------
ARR11(3)
---
ANAC58
<---------
ATHB12
<-----------------
AGL1
--------->
DEAR3(2)
<---------
AHL20(1)
--
CBF
----------->
ARR10
---------->
DOF2
<---------
LBD16
--------->
MYB46(3)
--------->
AHL20(1)
gaggttttggggagaattgcaataaagcaaaagttgttgtcaatttggggaaatttcgttaaccgactttttgttgggttaattttgaaaatattctaaa
7208600
<------
<-------
TEIL
<---------------
AtSPL3
<-------
MYC3
--------->
CCA1(2)
------->
MYC3
<------
ZmHOX2a(1)
<---------------
AtSPL8
<---------
WRKY18(1)
---------
TOE2(3)
---------->
DOF2
----------->
HVH21
---------
TOE1(3)
--------->
ANAC46
<---------
WOX13(1)
--------
AGL15
--------->
ARR14(2)
--------->
ANAC46
--------->
ATHB12
<
------->
AGL15
<---------
ARR14(2)
<-----------
GT1
<---------
AHL20(2)
--
ttaaggatagagtttggatacacaaaaagaatattgtacagcccattagagtttgtatttacccaatagacccaagactatttgattgacccatatgcat
7208700
<----
>>>>>>>>>>>>>>>>>
LFY
-----
<-----------
RAV1(1)
------
---------->
DOF2
--------->
YAB1
<-----
---
AtLEC2
------->
TEIL
--------->
TOE2(3)
--------->
ANAC58
<-----
---------
REM1(1)
--------->
TOE1(3)
<-----------
GT1
--------->
ANAC46
------
----->
TEIL
--------->
YAB1
---------->
DOF2
<-----------
RAV1(1)
--------->
ANAC58
<------
ZmHOX2a(1)
ggatgtagaatgaatcaaaagaagaaaccataaatcacaatgtggccaatgtgggttttacatgttcttgttcaacacgaaaattactaagtgtgaggat
7208800
---------
<---------
ANAC58
<---------
YAB1
<---------
ANAC58
<---------
YAB1
------->
TEIL
-----
GLK1(1)
<---------
AHL20(2)
---->
GLK1(1)
<---------
AHL20(1)
--->
ARR11(3)
--------->
ALFIN1
--------->
AHL20(1)
----
ARR11(3)
--------->
DAG2
---------->
DOF2
--------->
CCA1(2)
----
ARR14(2)
---------->
DOF2
--------->
DAG2
--------->
ANAC55(2)
<---------
YAB1
--->
ARR14(2)
----------->
GT1
<---------
MYB46(3)
---------->
DOF2
<-------
TEIL
<---------
YAB1
atcgtttgatgatttttgaaatgaaaaaaaaaaggtggatgtctactcttgggaaaaagaggtattcaaagttcatgtaatatatgaatgcttatgattt
7208900
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AGI:
At3g20630.1
Description:
UBP14 (UBIQUITIN-SPECIFIC PROTEASE 14); ubiquitin-specific protease. Identical to Ubiquitin carboxyl-terminal hydrolase 14 (UBP14) [Arabidopsis Thaliana] (GB:Q8L6Y1;GB:Q0WV77;GB:Q9FPT0;GB:Q9LJT6); similar to hypothetical protein OsI_000605 [Oryza sativa (indica cultivar-group)] (GB:EAY72758.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39183.1); similar to hypothetical protein OsJ_000581 [Oryza sativa (japonica cultivar-group)] (GB:EAZ10756.1); contains InterPro domain Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940); contains InterPro domain Zinc finger, UBP-type; (InterPro
Range:
from: 7202779
to: 7208408
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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