Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                     -------->P                   ------>MYB83                   ------>MYB46(1)       <---------At4g35610    <---------ANAC58                         ------>ZmHOX2a(2)    <---------ANAC58                      --------->YAB1                                        -----   --------->HSFC1(2)                    <---------ATHB12                           ----------->GT1   <---------HSFC1(2)               --------->YAB1                           <----------DOF2--------- ----->HVH21     --------->MYB46(3)<---------ATHB12                     <-----------GT1    <-------TEIL ->RAV1(2)    <-----------GT1    --------->WOX13(1)               <----------DOF2---------->DOF2<----   acagaagcttgctgattcaccaactctcaaaacttcaatcacaatgatccatgaaatcagtagtgcctctttgattaccctttgaaaggaaaattcataa  7202100                           ----------->RAV1(1)                          <----------ID1                        --------->ANAC58                        --------->ANAC58                        --------->ANAC46                      ---------->DOF2                  --------->YAB1                 <---------YAB1             --------->TOE2(3)                 <---------------AGL15      <---------MYB59 ---->AHL20(2) --------->YAB1               --------->TOE1(3) >YAB1       --------->AHL20(2)     ----------->RAV1(1)         <---------AHL20(2)                 -- -----AHL20(2)<---------YAB1 --------->MYB46(3)                --------->AHL20(2)            <-------   aaatgagtcttcaatttttataataaaagcaacaaatccaacaaaacctaaaccaaaatttcacataaaattcaattctatatggtctcagtatttcacc  7202200                                                  ---------->DOF2                                   -                                                 --------->AHL20(2)               --------->ANAC55(2)                                            <---------ATHB12                      <---------At4g35610                                       ==============================================================                                    --------->GLK1(1)                             <---------ANAC55(2)                                    <---------GLK1(1)                          --------->DOF5.7(2) --                                   <---------ARR14(2)              --------->GLK1(2)               <-                                   --------->ARR14(2)    ---------->DOF2       <---------MYB52(1)---- -------->DOF2          <----------DOF2----------------->AG       <---------GLK1(2)       <---------At4g35610 ----GT1           <-----------GT1 <---------GLK1(2)  ----------->GT1      <-----------GT1--------->At4g35610   ataaatccctaaaacatcgtataacgctttgaaaatggattcccaaatcaataaaagagtaaagaacagcatctgtttttcgttacctgataagcagacg  7202300                                     --------------->AGL15                                     <---------------AGL15              <---------YAB1        ----------------->AGL1                                <---------ARR11(3)           --------->GLK1(2)        ----------------->AGL3                                --------->ARR14(2)           <---------ARR14(2)       <-----------------AGL3                                --------->ARR11(3)          <---------GLK1(2)         =================================================================  ------->GAMYB                     ----------------->AGL2                        --------->ICU4 <----------ID1             --------->AHL20(2)           --------->ICU4        <---------AHL20(2) -------->RAP2.6(3)         --------->YAB1               <---------YAB1     <---------AHL20(2) =====================================================MADS_MADS      <---------LBD16      <---------ARR14(2) ------->MYB52(1)     --------->ANAC46      ----------->GT1      <---------YAB1<---------YAB1   <---- --------DOF5.7(2)    --------->ANAC58     --------->ANAC46    --------------->AGL15      <---------- ----->DOF5.7(2)      --------->ANAC58   --------->MYB52(1)    ======================================   ataacggcaagagattccgattagacgcaattaaaacacccataaacggaaacaatttcatgattctattatcgggattttataatttttagtatcttct  7202400                                              <-------MYC3                                              ------->MYC3                                              <-------MYC4                                       ----                                              <-------MYC2                                       ----                      --------->YAB1          ------->MYC4                                       <---    <---------MYB52(1)--------->AHL20(2)      ------->MYC2                                       ----  <---------------AGL15                      --------->O2                                       <----  --------------->AGL15                      <---------TGA1a                                    ----- <-----------------AGL3                      --------->ANAC55(2)                               *TSS <-----------------AGL1                      <---------ANAC55(2)                              ------- <-----------------AGL2                      --------->TGA1a                  <-----------GT1<------- =================MADS_MADS                  <---------O2             <---------ANAC58      <-------- ------DOF2        --------->YAB1--------->ARR14(2)                   <---------ANAC46     --------->YAB1 -ARR10        ----------->GT1   --------->GLK1(2)                    <---------ANAC58<---------HSFB2a(2) =================MADS_MADS      <---------ARR14(2)        >>>>>>>>>TBF1<---------ZAT6--------->HSFB2a(2)   ttttctgtttgtgggaatcgagaataatatgagcgaatttgaagaacacgtgtttggagaagaagaaacaattcgtgttatttctcttcgagattataat  7202500                                                                ------------>CBF                                                              ------>ZmHOX2a(2)                                                             <------ZmHOX2a(2)                                                             --------->GLK1(1)                                                             <---------GLK1(1)              <--------      <---------ZAT6                                        --------->ARR14(3)              --------- ----->YAB1                                                 <---------ARR14(3)              --------- ----->ATHB12                            ------>ZmHOX2a(2)  <---------ARR14(2)          <---------AHL20(2) ------ICU4                            <---------ARR11(3)   <---------ARR11(3)         --------->AHL20(2) ---->HAHB4                            --------->ARR11(3)   --------->ARR11(3)    --------->LBD16 -----YAB1                       <---------DAG2             --------->ARR14(2)   --------->LBD16 ---->ICU4                   --------->ZAT18               --------->RVE1(1) ------->TEIL  <---------AHL20(2) -->YAB1          <-----------GT1<----------DOF2        ---------->DOF2      --------->ARR14(2) --YAB1        ----------->TBP<---------ALFIN1        --------->AHL20(2)     <---------ARR14(2)<----- -AHL20(2)<-----------GT1    <---------ZAT18          <---------AHL20(2)    <---------CCA1(2)  ------   gatggccagtgttaactatataacaaattagcccactttttgatcttaaaaactaattaaaagatctccaatttcagtgtatcccgagattaaatatttt  7202600 -AHL20(1)                                         <---------ARR11(3)             <---------ICU4 >AHL20(1)                                   <----------DOF2                      --------->YAB1 >AHL20(2)        ----------->GT1           <---------DAG2     --------->YAB1    <---------ATHB12 ----AHL20(2)    <---------TOE2(3)  <---------YAB1 --------->ARR11(3)            --------->ICU4 --->AHL20(2)<---------At4g35610  --------->YAB1  <---------CCA1(2)       --------->MYB46(3)        -   aatcaacagtttttctgctaatgtaaaaaaaaacacttatgattccccttttatatcttcatttttcataaatctaagcaccaatgatgccaaaactgaa  7202700                                                                         ---------->DOF2                                                                      <---------AHL20(2)      <------                                                                      --------->AHL20(2)  -----------            <----------DOF2                                     <------NtERF2           <---------YAB1 --------->DAG2        ----------->GT1                         ----------->GT1        --------->YAB1 --------->DOF2      ---------->DOF2      ---------->DOF2    <------ZmHOX2a(1)  <---------At4g35610   ggaaaagctcaaaacttttatccaaaagaaaaaaaaaaaaaactgaaagtagttgagaactgaggaggcaaattaaaaagacagcgaatgatgtttagct  7202800                                                            <-----------GT1                                                           --------->AHL20(2)                               --------->LBD16        <---------MYB59         <---------GLK1(2)     <                           --------->ARR14(2)     --------->ZAT18             --------->ARR11(3)    -                   ----------->TGA1       --------->YAB1------>MYB83          <---------ARR11(3)    < ---At4g35610      ----------->HVH21 --------->AHL20(2) ------>MYB46(1)<-------MYC3                 - ------------>TaNAC69(2)   <---------ARR14(2)  <---------ANAC55(2)     ------->MYC3             <----   tctaaacgggtcttaaaatttgtgacgaagttccacagataaaatcatcaagtgaaccaaatttactaatccacatgtaagattttggaaccgaaactag  7202900          --------->TOE2(3)         --------->At4g35610         <---------At4g35610       <---------WRKY38(1)                              --------->AHL20(2)     <-----------HVH21                                  <---------AHL20(2) ---------TGA1a                     --------->ETT(2)<---------------AGL15 -------->O2                <-----------GT1 ---------->DOF2                        <-----------------AGL3 ---------O2          ----------->GT1   --------->TOE1(3)           <------ZmHOX2a(1) -------->TGA1a       --------->TOE2(3) --------->TOE2(3)       ---------->DOF2 ---------->ID1 -------HVH21        ----------->GT1<---------ETT(2)=================================================MADS_MADS   tcacatgggtcacctcaatccaaatgttaaaaaccctatcgaccttaaaagtttctatttaaaaaaaaaaggattagtttttgtctctgtaactggctcc  7203000  Previous    Next  AGI:  At3g20620.1    Description:  F-box family protein-related. similar to hypothetical protein [Vitis vinifera] (GB:CAN80943.1); contains InterPro domain F-box associated type 1 (InterPro:IPR006527) Range:  from: 7198460    to: 7202495    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g20630.1    Description:  UBP14 (UBIQUITIN-SPECIFIC PROTEASE 14); ubiquitin-specific protease. Identical to Ubiquitin carboxyl-terminal hydrolase 14 (UBP14) [Arabidopsis Thaliana] (GB:Q8L6Y1;GB:Q0WV77;GB:Q9FPT0;GB:Q9LJT6); similar to hypothetical protein OsI_000605 [Oryza sativa (indica cultivar-group)] (GB:EAY72758.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39183.1); similar to hypothetical protein OsJ_000581 [Oryza sativa (japonica cultivar-group)] (GB:EAZ10756.1); contains InterPro domain Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940); contains InterPro domain Zinc finger, UBP-type; (InterPro Range:  from: 7202779    to: 7208408    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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