Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                             --------->AHL20(2)                                                 <------                           <---------AHL20(2)                                                 <------                     --------->AHL20(2)                                                     ---------                     <---------AHL20(2)                                       --------->CCA1(2)                     <---------AHL20(1)                                      --------->ARR11(3)                     --------->AHL20(1)                                      <---------ARR11(3)                    --------->YAB1                  <----------DOF2        <---------TOE2(2)<--------                 <---------AHL20(2)               --------->LBD16          <---------TOE1(2)<--------                <---------AHL20(1)       <---------ANAC58               <---------ANAC46    ---------                --------->AHL20(1)       <---------ANAC58               <---------ANAC58   --------->CCA1(1) <-------TEIL   <---------AHL20(2)  <---------ZAT6--------->At4g35610   <---------ANAC58   --------->RVE1(1) ------GT1      --------->AHL20(2)  <-----------RAV1(1)        <---------TOE2(3) ---------->DOF2-----   acatacattctaagacaatttaatataatataaatctagtgttgtttgtctccgcttaagtgtttacggtaatgtcgtagatataaagacataatatctt  7143100                                                                      --------->AHL20(1)                                                                      <---------AHL20(1)         --------->AHL20(2)                                           --------->AHL20(2)       ----------->GT1                                            --------->AHL20(2)     ---------->DOF2                                              <---------AHL20(2) ---------->DOF2                                       <---------ARR11(3) ---ANAC58                                             --------->ARR11(3) ---ANAC58                                             --------->AHL20(1)                        <--- >AHL20(1)                --------->YAB1               <---------AHL20(1)      <------ZmHOX2a(1) ---- -AHL20(1)               --------->AHL20(2)           <---------AHL20(2) <---------AHL20(2)     <---- -ARR11(3)      ----------->GT1                 --------->TOE2(3)--------->AHL20(2)             ----- >ARR11(3)     --------->DAG2                   --------->HSFB2a(2)   <---------AHL20(2)     -------- ---->AtLEC2  ---------->DOF2                   <---------HSFB2a(2) <---------TOE2(3)  <-----------GT1   gcaaaaagaaagttaataaagtaaaaaataaaaatttagtattgtgtcttccataaatatttttaaaattaatattttataggataatataactataaat  7143200         <---------YAB1      <---------AHL20(2)     --------->AHL20(2)                            --------->AHL20(2) --------->AHL20(2)        <---------AHL20(2)      --------->AHL20(1)      <---------AHL20(2) <---------AHL20(2)     <---------AHL20(2)         <---------AHL20(2)     --------->AHL20(2) <---------AHL20(1)     --------->AHL20(2)         <---------AHL20(1)     <---------AHL20(2) --------->AHL20(1)    --------->AHL20(2)          <---------ARR11(3)  --------->AHL20(2) ------AHL20(2)        <---------AHL20(2)          --------->ARR11(3) --------->AHL20(2) ----->AHL20(2)       <---------YAB1              --------->AHL20(2)  <---------AHL20(2) -----AHL20(2)     <---------YAB1             --------->AHL20(2)  --------->AHL20(2) ---->AHL20(2)     --------->ICU4             <---------AHL20(2)----------->GT1        <---------YAB1 ->AHL20(2)  ------>ZmHOX2a(2)    <---------At4g35610         ---------->DOF2       --------->GLK1(2)   taataaattttatgatcgaacattattaatttatagagcttccactatataaatatattcgatgaaaagaaaataaataaatagaaattctaatttctgc  7143300                                    ----------->HVH21                                   --------->At5g28300                ------->MYC3      ----------->GT1      --------->At5g28300--------->AHL20(2)     ----------->GT1     <---------AHL20(2)    <---------DEAR3(1)  --------->AHL20(1)            <---------ICU4                        ---------   <---------ORA47(1)   <---------AHL20(2)    --------->MYB52(2)                       <----------DOF2   --------->SPL7       <---------AHL20(1)    <---------MYB46(3)                     ---------->ID1 <---------SPL7 <-------MYC3     <---------DEAR3(1)   <--------HAHB4                <-----------GT1 ----------->HVH21      --------->AHL20(2)  <---------MYB52(1)               <------------CBF     ---   aatcggacggtgagaaaacgtggaaatttaattcgacggtgacaacgtttgttcgataattagtttttttttttttgtcgattgtttttctttttcttaa  7143400                                                                      <---------ZAT18                                                                      --------->ZAT18                                                                    <---------LBD16                                                                   <---------ANAC46        <-----------GT1                                            <---------ANAC58       <-----------GT1                                  <---------ARR14(2)       <---------AHL20(2)                               --------->ARR14(2)                     ------   <---------RVE1(1)----------->TBP                     <---------GLK1(2)                 --------->HSFB2a(2) >TOE2(3)           <---------AHL20(2)   <---------ARR14(2)        <---------ANAC58  <---------At4g35610 ------>ANAC46    ----------->TBP        --------->ARR14(2) *TSS --------------------->WRI1  --------   acgcgatatttaacttatctatataaaaaacaaattcccatcaaattcggagactttggattctctgtttcgcgcgcttcgcagttcatcttccccaacg  7143500                                                                                      --------->ARR11(3)                                                                                      --------->ARR14(2)                                                                                      <---------ARR11(3)                                                                                      <---------ARR14(2)                                                                                     --------->GLK1(1)       ------>ZmHOX2a(1)                                                      --------->MYB46(3)    <  <---------At4g35610                                                        --------->SPL7         -  --------->At4g35610                                  <---------ARR14(2)   ------>MYB83            < --->MYB46(3)                                          --------->ARR14(2)   ------>MYB46(1)      <--- ->MYB52(1)           <---------CCA1(2)               <------ZmHOX2a(1)   <---------MYB59        ----   actctgctccttccccttctctccatctctctctcgttctaatcttcgacaatggaggaaatggaagacactgaaaccgaaccacaggtatcttcgatta  7143600                                           <-----------TGA1                                       --------->MYB52(2)                                      --------->SPL7                                     <---------MYB52(1)                                    <---------SPL7                                   <---------ANAC58 ---------ARR14(2)                 <---------ANAC58 -------->ARR14(2)        <---------YAB1 ---------->ID1                                            -- ---------GLK1(2)       <---------At4g35610<-----------HVH21                <---------YAB1--------->ICU4 ------ANAC55(2) <----------DOF2  --------------->AtSPL3        <---------AHL20(2)   ----------->GT1 ----->ANAC55(2) <---------DAG2 <-----------GT1               <----------DOF2   ------>ZmHOX2a(2)  <-   catattctctctaaattcgctttctcttctgattttgccgttcgtcgtcactagagagagagcgattttatgccgattgtgatcgatgtgtaaaaatttg  7143700                                  ------>ZmHOX2a(2)                                 <------ZmHOX2a(2)                                --------->ARR14(2)                                <---------ARR14(2)                                <---------AGP1                               <---------CCA1(2)             --------->ATHB12--------->TOE1(1)            <---------YAB1   --------->TOE2(1)                                                    ---            --------->ICU4  <---------LBD16                <---------ZAT14                <----------DOF2 <-----------------AGL2    --------->TOE2(2)               --------->ZAT14                <---------DAG2 ------->ARR11(3)          --------->TOE1(2)           <---------------AtSPL8  <---------ZAT2     --- --------ARR11(3)    --------->YAB1               ------>ZmHOX2a(2) --------->YAB1       <---------DAG2   atatctagttagggattattgaataaaaacctcggatctattgttgaatcgatctcaatagtacagacattgataaaccctagctgtttccccttttcaa  7143800                                            --------->ANAC46                                         ------>ZmHOX2a(2)                                    <------                                  <---------ARR14(2)    --------->ARR11(3)                    <------                                  --------->ARR14(2)    <---------ARR11(3)                 ------>ZmHOX2a(1)          <---------AHL20(2)  ------>NtERF2 --------->LBD16                            ------>MYB46(1)         <---------WOX13(1)   <---------At4g35610    --------->YAB1                    ------>MYB83      <---------YAB1          --------->LBD16    --------->ZAT6                     --------->MYB46(3) ------>TOE1(3)             <---------LBD16--------->HSFB2a(2)                 --------->ANAC46  <--- ------>TOE2(3)         <---------MYB46(3) <---------HSFB2a(2)        <---------ZAT18--------->AtMYB61   cctcaaatttgattaatcggaagtagttgttccgccgatttgatcccagaaacactaatatctgaggcactgtgcattaacacagaaccaatcctacttt  7143900                                                                                        <---------MYB46(3)                                   ------>MYB83                                        <---------TOE1(2)                                   ------>MYB46(1)                                <-----------HVH21                                   --------->GLK1(2)                            --------->ANAC58                                  --------->WOX13(1)                         --------->ZAT2                               ------->TEIL                                  <---------ZAT2       <---------ANAC58    --------------->AtSPL8                            <---------At4g35610       <---------ANAC58    <---------------AtSPL8                  <---------ANAC46    <---------TOE2(2) ----DOF2               <---------YAB1                             <---------ANAC58   <------NtERF2 ---DAG2  <---------ANAC46 <---------------AtSPL3                  <---------ANAC58 <---------DEAR3(1) --------GT1 <---------TOE1(2)<-----------GT1                 <---------AtLEC2  --------->ANAC58   tactctcttgcttcgtatgtgaaattgtgaatgtaccaatctgttttcaatgcaatgcaggtttacatggcttgtattcagcacggtcggaggttagcaa  7144000  Previous    Next  AGI:  At3g20475.1    Description:  ATP binding / damaged DNA binding. similar to MSH2 (MUTS HOMOLOG 2), ATP binding / damaged DNA binding [Arabidopsis thaliana] (TAIR:AT3G18524.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO38935.1); similar to Os05g0498300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055948.1); contains InterPro domain DNA mismatch repair protein MutS, C-terminal; (InterPro:IPR000432); contains InterPro domain DNA mismatch repair protein MutS, core; (InterPro:IPR007696) Range:  from: 7143460    to: 7151020    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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