Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                           --------->ARR14(2)                                                                                       --------->AtMYB61                                                                                      --------->MYB46(3)                                                                                   --------->MYB46(3)                                                --------->LBD16                  <---------ALFIN1                                              <---------LBD16                    ----------->RAV1(1)                                         --------->ANAC58  <---------AtLEC2    --------->LBD16                                      <------NtERF2   <---------ARR14(2)       ------>NtERF2                                    <---------ATERF1(2)   --------->LBD16     --------->DEAR3(1)                                    <---------DEAR3(1)--------->ARR14(2)      --------->ANAC46          <------NtERF2         <-----------RAV1(2)  <---------CCA1(2)        --------->ANAC58         ------>NtERF2       --------->ZAT2 --------->ARR14(2)                --------->ANAC58         ----------->RAV1(1)------>MYB46(1) --------->GLK1(2)      <---------TOE2(3) --------->ANAC58 ----->TOE1(3)              ------>MYB83 --------->ANAC58--------->ANAC46    <---------LBD16 -----ANAC46         <---------ATHB12------>NtERF2  ----------->ARR10 --------->WRKY18(1)<---------ARR14(2) ----TOE2(3)     --------->WRKY18(1)--------->ATERF1(2) <---------LBD16 --------->WOX13(1) -->MYB52(1)    <--------ZAP1<---------ZAT2 <---------ARR14(2)     <---------TOE1(3) --------->ANAC58   gtgaaacaaggcgacatcggtcaataaacctagctcaggcggcaagtatccggctatatccgcatggttaaggtcaatccccgccacaaccaatacgctt  6561700                                                      ------>MYB83                                                      ------>MYB46(1)                                                      -------->P                                                    --------->AtMYB61                                                    <---------MYB111(1)                                                    <---------MYB59                                                    --------->MYB46(3)                                               <---------HSFB2a(2)                                               --------->HSFB2a(2)                                           --------->ANAC46                                           --------->O2                                           --------->ANAC55(1)                                           --------->ANAC58                                           --------->ANAC58        <------NtERF2<---------ARR14(2)                             ========================bZIP_DOF     --------->LBD16               <---------ZAT18             ====================MYC_MYB--------->ALFIN1               --------->ZAT14             <---------O2          --------->RAP2.6(2)               <---------ZAT14             --------->TGA1a       --------->DEAR3(1)               --------->ZAT18             <---------TGA1a     --------->At4g35610           <-----------RAV1(1)             =====================MYC_MYB         --------->ARR14(2)        --------->ALFIN1     --------------------->WRI1 ------->GAMYB <---------ZAT6            <----  <-----------HVH21          <----------DOF2 ----------->RAV1(2) --------->ANAC46<------ZmHOX2a(2)   gggtcgtcaagtgctggtgcacagaaaactcctttgtaagaacacacgtctggaccaacccaattagccgcagtgttgaacggatcagagtagaatgcct  6561800                                                                                             ------>ZmHOX2a(2)                                                                                            <--------                                                                                            ---------                                                                                            <------ZmHOX2a(2)                                                                                           <---------ARR11(3)                                                                                           <---------ARR14(2)                                                                                           <---------                                                                                           --------->ARR14(3)                                                                                           --------->ARR11(3)                                                                                           --------->ARR14(2)                                                                                           <---------AGP1                                                                                           <---------ARR14(3)                                                                                         ----------->ARR10                                                                                      <------NtERF2                                                                                     --------->HSFB2a(2)                                                                                     <---------HSFB2a(2)                                                                                    <---------LBD16                                                                                   <------NtERF2                                                                                  <---------SPL7                                     <-------GAMYB                               <---------ANAC58                                    ----------->GT1                              <---------ANAC58     --------->ZAT2        <----------DOF2                                       <---------ANAC46     <---------ZAT2   --------->ANAC58          <---------ARR14(2)               --------->ETT(2) ------DOF2           --------->ANAC58<---------MYB52(1)                       <-----------HVH21  <--   ttttccaagcttgaagggcaatgtaagcccttttaagtctgttattagcaaatttgaggtctaaatcgacttcgtactcgatgtcgtcgggaagatctcc  6561900                                                                  --------->LBD16                                                                 <---------ANAC46                                                                <---------At4g35610                                                                <---------LBD16                         <---------ANAC46                       --------->At4g35610                        <------NtERF2                  ----------->ARR10    --------->AHL20(2)       <---------ICU4 <---------ANAC58  --------->HSFB2a(1)   --------->ATERF1(1)    --------->YAB1    <---------ANAC46  <---------HSFB2a(1)   <---------DEAR3(1)   <---------YAB1     <---------RAP2.6(2)     ------>ZmHOX2a(1) ------>NtERF2 -GLK1(1)             <---------ANAC58  <---------HSFC1(2)   <---------At4g35610 >GLK1(1)      --------->DAG2           --------->HSFC1(2)   --------->At4g35610 --ARR10      ---------->DOF2           --------->At4g35610 --------->DEAR3(1)                  ----- -------MYB52(1)     <------NtERF2---------->DOF2   <-----------HVH21  ----------->GT1 ----------->GT1   gttttctgataatgccaaaagttggcgtcttgtaagaaaagaagcttcctcatcggtgagagccgctgcggaatagaaaaaaatggagatggtgaaacaa  6562000                                                    <---------YAB1                 <---------ANAC58                  ---------->DOF2                   ----------->GT1                <---------ANAC58              --------->At4g35610             --------->ICU4                   <---------ANAC58           --------->At4g35610             --------->WRKY18(1)                 <---------ANAC46    <-  <------ZmHOX2a(1) --------->DAG2        <-----------HVH21                    <---------ANAC58 <---- ----->DOF2<---------At4g35610        <---------LBD16                   <----------DOF2        ------   aagaggagaaggaagcagccaaaaggcttctccattgttcttcgggtcatggtgatgaaaaaacttggaaatggctctatggcttgcttaatagatgaat  6562100                                                         --------------->AGL15                                                        <-----------------AG                                                        <-----------------AGL1                      <                                                        <-----------------AGL2             --------->TOE2(3)                                               <------------CBF                          <---------TOE1(3)    <---------ANAC46                      <------------CBF                               <---------TOE2(3) <---------ANAC46                        --------->ATHB12<---------------AGL15          --------->MYB52(1) --------ANAC46                        >>>>>>>>>>>>>>>>>LFY                   --------->AHL20(2)  <-- -------RAV1(1)  --------->YAB1        <<<<<<<<<<<<<<<<<LFY<---------YAB1     <---------AHL20(2)  <-- ->TEIL <------ZmHOX2a(1)*TSS   --------->MYB52(1)      <-----------------AGL3<-----------TBP  ------   gttgtggagaggaagcctataatgaaacgaaggcaaacagaaaccattggattgttttgctatttttggtataacaaaatttatatagactaacgtttaa  6562200   --------->ANAC58   --------->ANAC58                                      <----------DOF2  --------->SPL7                               --------->WRKY38(1)                          >>>>>>>>>SARD1 ---------SPL7                                 --------->WRKY12                             >>>>>>>>>CBP60g -------------AtSPL3    <---------At4g35610    ----------->HVH21                <---------YAB1 -------------AtSPL8<---------REM1(1)        <-------GAMYB                     >>>>>>>>>>>>>>>>>LFY ---->DOF2        <------------CBF          <---------MYB46(3)                <-----------GT1   agggtacgaaaatagcaaactattgtagctaatttagaattagaggtcgttgacaacgtctttacaagtttagtttagttttaccattgttgaaatttgg  6562300                                                                                            <--------                                                                                            <--------                                                                                            <--------                                                             ----------->GT1          <---------ANAC58                                                      <---------ANAC46                <---------ANAC58                    ----------->GT1                   ----------->GT1                 <---------ANAC46                   <---------HSFB2a(2)              --------->ZAT14                  <---------TOE2(3)                   --------->HSFB2a(2)              <---------ZAT14                ----------->HVH21             <---------At5g28300                   <---------ZAT6             --------->AHL20(1)            <-----------GT1              <----------DOF2<---------YAB1        <---------AHL20(1)      <---------AHL20(1)      ----------->GT1  <XXXXXXXXXXXXXXXXXXXXMIR2939   <---------AHL20(2)      <---------ARR11(3)     --------->DAG2   <---------ANAC58                --------->AHL20(2)      --------->AHL20(1)    ---------->DOF2   <---------ANAC58               --------->AHL20(2)   acgaccaatattttttacagtctggaaaaaaaaagtaaaaactcttttgcttagtgttgtgatttgtgaatatttcaaattttatttgacgtttgcgttt  6562400                                        ----------->GT1                                      <---------ANAC58                               <---------AHL20(2)    <----------DOF2                   <---------ANAC46                  <---------YAB1           ---- -ANAC58                    <---------AHL20(2)                        <---------AHL20(2)         <--- -ANAC46                   --------->AHL20(2)     <---------ANAC46   <---------YAB1 --------->AHL20(2) -ANAC58       ----------->GT1        <---------ANAC58    --------->ZAT14           <---------AHL20(2)   tgaactctttgggaaaacagtgaaacaaattaaaacgttttcttgtaaaattgctgatactgtaggctatatttattgttgaaaattttaatttttgtta  6562500                                                                                          <---------ICU4                                                                                          --------->YAB1                                                               <---------ICU4            <---------YAB1                                                               --------->ATHB12        --------->YAB1                                                              --------->ICU4          <---------YAB1                                                        <---------TOE2(3)            <-----------TBP                                                  <---------AHL20(2)          --------->ARR11(3)        <----------DOF2                           --------->AHL20(2)          <---------ARR11(3)  ---------->DOF2                                --------->AHL20(2)           <---------ARR14(2) ------->GT1        <---------ZAT14           <------ZmHOX2a(1)-------->HAHB4 --------->ARR14(2) ------TOE2(3)      --------->ZAT14           ----------->GT1 <---------YAB1 <---------CCA1(2)  <----   agaaaaaagactttcttagtagtatagtatttgaagaaaattttcaaaggattaaattaagaaaatgattccaactagtatatctgtttttataatcact  6562600  Previous    Next  AGI:  At3g19020.1    Description:  leucine-rich repeat family protein / extensin family protein. similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT1G49490.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47727.1); contains InterPro domain Leucine-rich repeat, N-terminal (InterPro:IPR013210); contains InterPro domain Pistil-specific extensin-like protein; (InterPro:IPR003882); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) Range:  from: 6558979    to: 6562125    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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