Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                            <-----------GT1                                                       -----                  <---------At4g35610                                                    <---------ATHB12                  --------->At4g35610                       --------->TOE2(3)           --------->ANAC58                  --------->ZAT2                            --------->TOE1(3)           --------->ANAC58 --------->ANAC55(2) --------->At5g28300           --------->TOE2(3)                   --------->WOX13(1) <---------ANAC55(2)----------->GT1              <---------ARR11(3)                 --------->ANAC58 -------TEIL  <-----------HVH21                  --------->ARR11(3)                 --------->ANAC46 -----------AtSPL8<---------ZAT2                <---------GLK1(2)                   --------->ANAC58-   ggtacgtagcagtttccttcagctgtaatttccatcccaaaatcaattcaaaatctcaaaacccttaatgggggaaacaacatgacaagcaatcaactaa  6412700                                                         --------->ARR14(2)                                                         <---------ARR14(2)                                                   <------NtERF2                                                 <---------DEAR3(1)                                                --------->ATERF1(1)                                              ----------->HVH21                                            <---------ZAT2                                       <---------HSFB2a(2)                                       --------->HSFB2a(2)                                <-----------GT1--------->MYB52(1)                          <----------DOF2   --------->ZAT2  <---------YAB1     ------->TEIL     ----------->GT1     <---------ANAC58   --------->At4g35610            <------NtERF2       ------ ----->DOF2              <---------ANAC58   <---------At4g35610           ------>NtERF2      <------- --------->DOF2  <-------TEIL  ----------->HVH21--------->SPL7           <----------ID1    ----------   aagaaagaagaaaaaaacatacattttgcttttgtgaccctctcggagcagacggcgaggttacgcttggacttggcgacgaacttgttgaactctgcgc  6412800                                                                  --------->ATERF1(1)                                                                  <------NtERF2                                                                 <---------ATERF1(1)                                                                 <---------DEAR4(2)                                                                 ------>NtERF2                                                                 <---------ERF1                                                                 <---------ORA47(2)                                                                 <---------RAP2.3(1)                                                                <---------RAP2.3(2)                                                                --------->ATERF1(2)                                                                <---------RAP2.6(2)                                                                <---------DEAR3(1)                                                                <---------ANAC46                                                                <---------RAP2.3(3)                                                 --------->MYB52(1)                                 -                                                 ------------>AtMYB77                              --                                       --------->ANAC58        --------->ATERF1(1)                 <-                                       --------->ANAC58        <---------ABI4(1)                  <--                                      <------NtERF2  <-----------HVH21                            ---                                     <---------ATERF1(1)   --------->ANAC46                       <--                                     ------>NtERF2  ----------->GT1<---------ANAC46             -----                                    --------->DEAR3(1)     <---------O2                         <----             <---------REM1(1)      <---------DEAR3(1)--------->ARR14(2)                        -----             --------->ALFIN1       ----------->HVH21--------->At5g28300                     --------    ------>ZmHOX2a(2)            <---------DEAR3(1)<------------MYB.PH3(1)                  <--------   <------ZmHOX2a(2) <-----------RAV1(2)         <---------DOF5.7(2)                        <-------- --->LBD16 <---------At4g35610--------->ATHB12   ------------>MYB.PH3(1)                   <---------LBD16 --LBD16   --------->At4g35610--------->YAB1   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       --------->MYB52(1) >CDC5   <-----------RAV1(2) <---------ATHB12--------->ALFIN1 <---------ATERF1(1)        <---------ATHB12   gagcgatctgttcaggtgtaaggccagacgaatcatcggcgacggaagtggtaacggttacacgaggcggcgagtttgctacagaacccaaatcacggga  6412900             --------->ATERF1(1)       <------NtERF2      ------>NtERF2      <---------ATERF1(1)     <---------DEAR3(1)     --------->DEAR3(1)     ----------->HVH21    --------->RAP2.3(1)   <---------ATERF1(1)   --------->LBD16  --------->ATERF1(2)  --------->DEAR3(1) -------->MYB52(1)    ---------->DOF2 ------->AtMYB61   --------->ANAC58 --------ALFIN1    --------->ANAC58                        <-----------RAV1(2) -------MYB55(2)   <------NtERF2                      <-------GAMYB                          -------- ------>MYB46(3) <-----------RAV1(2)                  --------->ALFIN1                       <------- -------ABI4(2) <------NtERF2                       <---------ANAC46                        <------NtERF2 ---->PCF2   --------->RAP2.6(3)                    <---------ANAC58                      --------->ALFIN1 -----ARR14(2)--------->ANAC58             <---------HSFB2a(1)  ----------->GT1         <---------ANAC58 ---->ARR14(2)--------->ANAC58             <---------HSFC1(2)----------->GT1            <---------ANAC58 ->LBD16<---------ANAC46                   --------->HSFC1(2)<------MYB46(1)    <---------TOE1(3)  -- -LBD16--------->ATERF1(1)  <------ZmHOX2a(1)<----------DOF2 <------MYB83       <---------TOE2(3)  -- -ANAC55(2) <---------ATERF1(1)<------ZmHOX2a(1)    <---------ANAC58         <---------MYB52(1) -----   accaccggcgacggagacggcagggaaagaggaggaagaaggggaagctttgaggcgtttggcaggttgaaaaaaatccattagggttttaggtgtcgac  6413000                                                                     <---------AHL20(2)                                                                  --------->AHL20(2)             ----                                                           <------ZmHOX2a(2)                    <----                                                          --------->ARR11(3)     <---------AHL20(2)                                                  >>>>>>>>>TBF1   <---------AHL20(2)     <---------YAB1 ->ETT(2)                                >>>>>>>>>TBF1    <---------ARR11(3)    --------->AHL20(2) --ETT(2)    --------->HSFB2a(2)       ------------------------>ANAC81     ------------>CBF     ----- ------->ANAC58               --------->ICU4   >>>>>>>>>TBF1------>ZmHOX2a(2)   <---------AHL20(2) ------->ANAC58          --------->WOX13(1) >>>>>>>>>TBF1<---------GLK1(1)--------->TOE2(3)    <----- ---->ANAC46 <---------HSFB2a(2)      >>>>>>>>>TBF1      --------->GLK1(1)*TSS  <---------AHL20(1)  -   gaagccatctccgtttcagaagtgaatcagtcactatgaagaagaagaagaagaagaagagatcccaattttttattctcaatttttttttatgtttccc  6413100                                                                                              <------                                                                                             --------                                                                                             --------                                                                                            ---------                                                         --------->GLK1(2)                  <--------                                                        <---------GLK1(2)                   <--------                                                       <------ZmHOX2a(1)                    ---------                           <------NtERF2             <---------TOE2(3)                     <---------HSFC1(2)                          --------->LBD16        <-------GAMYB                             --------->HSFB2a(1)                         <---------ANAC58       <---------DEAR3(2)                         --------->HSFC1(2) ----->LBD16             <---------ANAC46      <---------DEAR3(1)                     <---------TOE2(3) -----HSFB2a(2)          <---------ANAC58     ----------------->AGL1                ---------->DOF2<- ---->HSFB2a(2)         <---------LBD16       <-----------------AGL1            ----------->GT1   <-- ----LBD16     ----------->GT1   <---------At5g28300 <---------TOE1(3)<---------RAP2.6(3) ----------- --------->DOF2<---------ZAT6   --------->MYB52(1)   --------->ANAC55(2)    <-----------GT1<---------HSFB2a(1)   agaaaagtttcagagaagagttaaatggcgggaataacggtggtataggccggttaaggaatctcttcaggccgatataaaccggttaaaggaagattcg  6413200 -TEIL---------->DOF2 ->ARR14(1) ->CCA1(2)                                                               <---------ANAC58 >ARR14(2)                                                               <---------ANAC58 -ARR14(2)                                                          --------->ANAC55(2)             - -GLK1(2)                                                           ----------->GT1             ----- >ARR11(1)                                                          <---------ANAC55(2)         ----- --------ALFIN1                                                  <---------AGP1  <-------GAMYB  ----- -------ZAT18                                           ------->TEIL--------->HSFB2a(2)       ------- >ARR10                            <-----------GT1<------ZmHOX2a(1) <---------HSFB2a(2)  <----------ID1   cacactcagaaagtcagaaacaattccaatttcaatttgacattttagtttaggaacgaatttagtagttctgtaacttgttctgttgagaagaacaaaa  6413300           <----------ID1                     <---------ZAT14    ----------->GT1                    ---------->DOF2                                  <------ZmHOX2a(1) --------->DOF2                  --------->YAB1                                     ---------->DOF2 ---->ANAC58                  --------->YAB1 --------->ARR11(3)                 <----------ID1 ------------------->ANAC81  <---------AHL20(2)                           <---------AHL20(2)    ----- ---->ANAC58                 <---------YAB1  <---------ARR11(3)       --------------->AGL15     ----- --->DOF2---------->DOF2    --------->AHL20(2)<------ZmHOX2a(2)       <---------------AGL15     -----   gcaaaagggctaaaagacaaattcaacatatataatagtcacaaagagatcactgaaattggttctaagtttctatataaaaaaaacaaaggacataaac  6413400                                                                            --------------->AGL15                                                                        --------->RVE1(1)           -                                                                       <---------ARR11(3)           <  --------->YAB1                                                       --------->GLK1(2)            - ---->ANAC46   --------->YAB1                          ---------->DOF2 --------->ARR11(3)         <-- ---->ANAC58  <---------YAB1   <-----------GT1    ----------->GT1     <---------GLK1(2)         <---- ---->ANAC58--------->YAB1  <---------CCA1(2)---------->DOF2    <----------ID1             ----------   gcaatcttggtctattatcagacttggaccatatcacattatgtcgaaaaagaagaaaaaagaattgggacaaaatctctctaatggggacaacaaagca  6413500                                                   <---------ZAT2   --------->ICU4                 <---------ALFIN1                  --------->At4g35610                 ----------->GT1 -------->At4g35610                -------->P      --------->ZAT2   <---------YAB1 <------ZmHOX2a(1) ---------At4g35610       <---------ATHB12  <-----------GT1 <---------ARR11(3)   --------->ANAC58 ---------->RAV1(2)--------->At4g35610    <-----------GT1   --------->ARR11(3)   --------->ANAC58 -------ALFIN1 <-----------HVH21  ------->GAMYB --------->ZAT14   --------->YAB1 <---------TOE2(3) -------HVH21 <---------ICU4     --------->MYB46(3)<---------At4g35610    ---------->DOF2 >DOF2        --------->YAB1   <-----------GT1  <---------ZAT14  <---------YAB1--------->CCA1(2)   tcacctgctcttctaagcatcacctccaaagattaacaaccatttttcactgcagctctcaagatttatgatgatggaaagataaggaattgtattaaga  6413600  Previous    Next  AGI:  At3g18630.1    Description:  uracil DNA glycosylase family protein. similar to uracil DNA N-glycosylase [Arabidopsis thaliana] (TAIR:AT2G10550.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15386.1); contains InterPro domain Uracil-DNA glycosylase, not poxvirus; (InterPro:IPR003249); contains InterPro domain Uracil-DNA glycosylase; (InterPro:IPR002043); contains InterPro domain Uracil-DNA glycosylase-like (InterPro:IPR005122) Range:  from: 6410964    to: 6413074    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g18640.1    Description:  zinc finger protein-related. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G26850.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G26850.2); similar to hypothetical protein [Vitis vinifera] (GB:CAN61511.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) Range:  from: 6413307    to: 6416556    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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