Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                               --------                                                                                             <-------                   -------->P                                                                <-------                  --------->MYB52(1)                                                       --------->TOE1(2)                 ------->GAMYB                                                             <---------SPL7                --------->MYB46(3)                                                       <-----------                <---------MYB52(2)        <-----------HVH21                              <-----------           --------->ZAT6      ----------->HVH21                                         ------------         ------>MYB46(1)   <---------ANAC46                                              ------------         ------>MYB83      --------------------->WRI1                               --------->TOE2(3)         --------->MYB52(1)<---------ANAC58                               --------->ALFIN1 --------->TOE2(2)       <---------MYB59     <---------ANAC58                    --------->ANAC46     --------->TOE1(3) -----ZmHOX2a(1)<---------MYB111(1)   <---------ALFIN1       --------->ZAT6     ---------->DOF2  <---   aggactaaacctaacacaactaacccattccttgtgaccatcaccttcagagatggtatacttacactcaccaagtgtgttccaaagcttaatcgtacga  6212000                       <-------GAMYB                                      --------->DEAR3(2)                      --------->LBD16                                    --------->ARR14(2)                     --------->ATERF1(2)                              --------->MYB46(3)                 ------>ZmHOX2a(2)                                    <---------ATHB12      --------->At4g35610  <---------YAB1                     --------->SPL7   ---------->DOF2   <---------ANAC46                      <---------ANAC58 ->SPL7         <------ZmHOX2a(2)                          <---------ANAC46                  -------- --TOE1(2)     <---------ARR11(3)                       <----------DOF2  ------->TEIL       --------- --TOE2(2)<---------ARR14(2)--------->ZAT6              ============================================= ----AtSPL8    --------->ARR11(3)                <---------ZAT18     ------>MYB83           <-------- ----AtSPL3    <---------ARR14(2)                --------->ZAT18     ------>MYB46(1)        --------- --->AtSPL8  --------->ANAC58                    <---------ZAT14    --------->MYB52(1)      <-------- --->AtSPL3  --------->ANAC58               ------->GAMYB  <---------ANAC58                 <-------- ---ZmHOX2a(2) --------->ARR14(2)        ----------->RAV1(1)  <---------TOE1(2)             <--------   tcacgagaagcagacacgatctgccggttatcagtagagaatgcaacagagagcacatctttcgtatgaccaacgaatcgacgagttgtttctcccgtgg  6212100                            <---------ZAT2                 --------->ZAT18 <---------ANAC46   ------>ZmHOX2a(2)        --------->ZAT2  <------ZmHOX2a(2)         --------->At4g35610 <---------ARR11(3)         <---------At4g35610 --------->ARR14(2)        <---------TOE1(2) <---------ARR14(2)   <-----------HVH21 --------->ARR11(3)   <---------SPL7                   <---------TOE2(1) ->LBD16         ----------->HVH21              --------->MYB52(1) >O2           --------->GLK1(1) <---------HSFB2a(2)   <---------TOE1(1)                    <-------- =bZIP_DOF     <---------ZAT2    --------->HSFB2a(2)  --------->SPL7                        <-------- -O2  --------->LBD16--------->DEAR3(1)  --------->ZAT18<---------At4g35610                 <-------- >TGA1a        --------->ZAT2   <---------LBD16----------->HVH21                            <-------- -TGA1a        <---------At4g35610       <---------ZAT18--------->At4g35610   --------->ANAC46 <----- -ANAC58       --------->At4g35610--------->LBD16   <---------SPL7    <---------ARR11(3)  --------->ZAT18 -ANAC58      <-----------ARR10--------->MYB52(1)   <-----------HVH21 --------->ARR11(3) ----------->HVH21   caagatcccagagacggagctcaccgtcccagcttccggagagtgcaaactgaccgtccgatgagagaacaacatcttccacgaagtgagagtgacctgt  6212200                                                                     --------->ANAC46                                                                   --------->ANAC46                                                                   --------->ANAC58                                                                   --------->ANAC58                                                                   --------->ANAC55(2)                                                                   <---------ANAC55(2)      <----------CDC5                                              --------->O2     --------->At4g35610                                <---------WOX13(1)   ----------->HVH21     <---------At4g35610                              --------->ATHB12       ----------->TGA1   --------->SPL7                              --------->LBD16 <-----------HVH21                    - -ANAC46                                      --------->HSFB2a(2)  <---------O2                     < -ANAC58            --------->SPL7===========================================bZIP_DOF             --- -ANAC58          --------->At5g28300         <---------HSFB2a(2)  <---------TGA1a       --------->ETT(1) -bZIP60(2)   <---------ALFIN1    ------>ZmHOX2a(1)  <---------YAB1--------->TGA1a    <---------bZIP60(1) ------HVH21----------->RAV1(1)   <----------DOF2  <------ZmHOX2a(1) ----------->HVH21--------->bZIP60(1)   gagcctacgctgagcaacaccgtaagacttatcgtcctttgtgagtttccagaggatgatggatttgtcacgcgacgctgtgacgatgatgtcggaattg  6212300                                       <------NtERF2                                       --------->ANAC58                                       --------->ANAC58                                      <---------ZAT18                                      --------->ZAT18                                      ------>NtERF2                                     <---------ANAC58                                    <---------PCF2                                  <---------DEAR3(1)                               --------->ALFIN1                             <---------DEAR3(2)                            <---------DREB2C(2)                            <---------DEAR4(1)                 <---------ANAC58 <---------RAP2.3(3)       <------NtERF2        <---------DEAR3(1)      <---------SPL7        <---------At1g77200                                                 <<<<<  <---------DEAR3(1)       --------->DDF1      <---------ZAT18                             --------->GLK1(1)  ------>ZmHOX2a(2)      <-----------RAV1(1)<---------ICU4                             <---------ANAC46 -------->ARR14(2) ----------->HVH21--------->ATERF1(1)                         <---------TOE1(3) ---------ARR14(2)--------->At5g28300<---------ANAC58                           <---------TOE2(3) ------>ETT(2)   <---------ANAC58--------->ALFIN1                    ------>NtERF2    <---------LBD16   tcgatcggcgtagcgatggccgtgacaatgtcggtgtgggcgcgcataatgcccttcaatacgagtccctcggccatggtttgaggttttcgggtttctt  6212400                    --------->MYB52(1)                   ----------->HVH21                 <---------ANAC55(2)                 --------->ANAC55(2)                 <---------ANAC46                                <-----------GT1                 <---------ANAC58                        <------MYB83                 <---------bZIP60(1)                     ----------->GT1                 --------->bZIP60(1)                     <------MYB46(1)                 <---------ANAC58                    --------->ATHB12        --------->ANAC58               *TSS  <------------CBF<-----------TBP        --------->ANAC46             <---------TOE1(1)  --------->MYB59                       <------        --------->ANAC58             <---------TOE2(1)  --------->MYB46(2)                    <------ <<<<TBF1       <-----------------------TaNAC69(2)  --------->ICU4                   ------->TEIL   <   cttcttactcacgaaaatggcgtaacagagcgagagattacgaggtcgattgaaatgtttggtatttatactctaggtctaaaaatgaatcaaattaggg  6212500                                              --------->LBD16                                            <-----------------AGL1                                            ----------------->AGL1                                          --------->ARR14(2)                                          <---------ARR14(2)                                        --------->HSFB2a(1)                                        --------->HSFC1(2)                         <-----------RAV1(1)                                        <---------HSFC1(2)                   <---------AHL20(2)                                        <---------HSFB2a(1)                  <---------AHL20(1)                                      <------NtERF2                          --------->AHL20(2)    <---------AtMYB61                <------NtERF2 --------->MYB59           --------->AHL20(1) ---TOE1(3)                          --------->LBD16----------->GT1         --------->AHL20(2) ---TOE2(3)              <-----------------AGL1 <-----------HVH21      --------->HSFB2a(2) ---------ANAC46 <------ZmHOX2a(1) <---------LBD16<-----------RAV1(2)--------->At4g35610   tttagtgtggtttctgcgaggagactggctcatttgggccggagtttccgagtcaggtataaatgggcctcttctgaaataaattttgttggagcatttt  6212600                                                         <---------ARR14(2)     <---------ZAT14                  --------->ICU4      --------->TOE1(2)  --------->ARR14(2)     --------->ZAT18   ---   tgttgtgatatagttgagaaatgtttgatcagagagggaacataagagcaatttgaacgaattcgattgaaatgtacaagagtttactaaaacacaaata  6212700                                                                 --------->ZAT14                                                               --------->ZAT14                                                               <---------At4g35610                                                               --------->At4g35610                                                             --------->ANAC46                                                          --------->ZAT18                                        <---------TOE2(3) <---------ZAT18       <---------TOE1(2)                <---------TOE1(3) <---------ZAT14  <----------DOF2      <----    --------->YAB1                <---------YAB1     <---------ZAT14      <---------ANAC58  <--------   <<<<<<<<<ARR1          <----------DOF2         --------->YAB1 <---------ZAT14    --------->ARR11(3)   <<<<<<<<<ARR2  <---------ICU4  --------------->AGL15   --------->ZAT14 <---------ANAC46  --------- ------>ZAT6   --------->YAB1     <---------------AGL15<---------ANAC46   <---------ANAC58  <--------   acacaatcgtagtttgttcataatttagctttgattcttattaaggttttaatcgtgaagtgcacagcacacagtggctttgtgatgaccttggtacact  6212800                        --------->AtMYB61                    --------->MYB46(3)                   <------NtERF2                <------NtERF2               ------>NtERF2                   <---------ATHB12              --------->ATERF1(2)           <---------TOE1(1)              <---------ATERF1(2)    <---------MYB52(1)            <---------ZAT2           <------NtERF2  --------------->AtSPL3            --------->ZAT2          <-----------HVH21     <----------DOF2--------->DEAR3(1)   <-----------HVH21 ------DOF2 --------->At4g35610     <---------RAP2.6(3)                  ----------->GT1 -ZAT18     <---------At4g35610    --------->ANAC46 --------------->AtSPL8 >ZAT18  <---------ANAC58          --------->RAP2.6(2)        <---------YAB1      <---------GLK1(2) -ZAT14  <---------ANAC58   --------->GLK1(2)<---------At4g35610     <---------GLK1(1)   <---------YAB1   ttcacttctttgcctgctggcatcgaccacaatctagccgtcatgtccgatgatgctgtacaacatcatagaaacccgtttaaagattgttctgatatgt  6212900  Previous    Next  AGI:  At3g18130.1    Description:  guanine nucleotide-binding family protein / activated protein kinase C receptor (RACK1). similar to guanine nucleotide-binding family protein / activated protein kinase C receptor, putative / RACK, putative [Arabidopsis thaliana] (TAIR:AT1G48630.1); similar to Guanine nucleotide-binding protein subunit beta-like protein (GB:Q39336); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 6210910    to: 6212439    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g18140.1    Description:  transducin family protein / WD-40 repeat family protein. similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT2G22040.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23544.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 6212602    to: 6214791    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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