Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                         <---------ZAT2                              <---------At4g35610  <xxxxxxxxxxxxxxxxsmallRNA(i)                              --------->At4g35610 <---------ZAT6      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      ---------->DOF2      <------ZmHOX2a(1)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         --------->ALFIN1   --------->At5g28300  <-----------RAV1(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        <---------- -----DOF2              <---------ANAC46 --------->At4g35610                        <---------ARR14(2) ----------AGL15    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         <----------DOF2    --------->ARR14(2) --------->AGL15   --------->YAB1        <---------At4g35610xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ---ANAC46        <---------ATHB12       --------->ZAT2   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)xxxxxx ---ANAC58      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)---------->DOF2       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ---ANAC58    xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)  xxxxxxxxxxxxxxxxxxxx   ttagcggtaaaagaggctcaatcgtggcaggaagctcaattcgagctccatagtgaaagtcatggttctttgtctatagataatcgaattcgggtgaggg  6073400                                                                                     xxxxxxxxxxxxxxxx                                                                                    <------MYB83                                                                                    <------MYB46(1)                                                                                    <---------HSFB2a(1)                                                                                    <---------HSFC1(2)                                                                                    --------->HSFB2a(1)                                                                                    <---------MYB46(3)                                                                                    --------->HSFC1(2)                                                                             xxxxxxxxxxxxxxxx>smallRNA(i)                                                                            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                                                           <------ZmHOX2a(1)                                                                          xxxxxxxxxxxxxxxx>smallRNA(i)                                                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                         <---------TOE1(2)                                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                        xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      xxxx                                                ------>ZmHOX2a(2)     xxxxxxxxxxxxxxxx>smallRNA(i)                                                ==================================HOX2a_HOX2a    <xxx                                              --------->ARR14(2)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                              <---------AGP1         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                <----------DOF2               <---------ARR11(3)   <xxxxxxxxxxxxxxxxsmallRNA(s) -----                <---------DAG2                --------->ARR11(3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           <-------TEIL                       <---------ARR14(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          --------->CCA1(2)                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <------ZmHOX2a(1)<--         <---------ARR11(3)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxxxxxxxx       --------->ANAC58             <---------AHL20(2) --------->ANAC58 <---------LBD16      --------   --------->YAB1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)---------->DOF2 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) ------->TEIL  xxxxxxxxxxxxxxxx>smallRNA(i)<---------WOX13(1)     <xxxxxxxxxxxxxxxxsmallRNA(i)  xxxxx -HVH21--------->ANAC58    --------->MYB52(1) ------->TEIL   ----------->HVH21xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxx>smallRNA(se3)     <----------DOF2  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxx xxx>smallRNA(le3)         xxxxxxxxxxxxxxxx>smallRNA(i)--------->ANAC58xxxxxxxxxxxxxxxx>smallRNA(i) x   atgtatcacaagatacaactttttctggctatcggtgttttattgatggatcttggaaagcaagtgaccagttctcaggaacaggatggttctgtctatc  6073500                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                              <---------WRKY38(1)                              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                              <---------WRKY12                             <------NtERF2                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                           >>>>>>>>>AtERF-3                           >>>>>>>>>AtERF-4                           --------->RAP2.3(3)                           --------->RAP2.3(2)                           --------->DEAR3(1)                                                       x                           --------->RAP2.6(2)                                                      x                          --------->RAP2.3(1)                                                      --                         --------->At4g35610                                                      <--                         <---------At4g35610                                                      <xx                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                  <----                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                  <xxxx                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                     <-----                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                        xxxxxx                 --------->MYB46(3)                                                        xxxxxxxxxx                 <---------ATHB12   <-------TEIL                                           xxxxxxxxxx                ------>MYB46(1)<---------DOF5.7(2)                                         xxxxxxxxxx                <xxxxxxxxxxxxxxxxsmallRNA(i)                                               xxxxxxxxxx                -------->P--------->ATERF1(1)                                              xxxxxxxxxx              --------->DEAR3(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                       xxxxxxxxxx              <xxxxxxxxxxxxxxxxsmallRNA(i)                                                 xxxxxxxxxx             <------NtERF2<------NtERF2                                                   xxxxxxxxxxx          <xxxxxxxxxxxxxxxxsmallRNA(i)                                                    xxxxxxxxxxx         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                            xxxxxxxxxxx         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                             xxxxxxxxxxx        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                            xxxxxxxxxxxxx        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                           xxxxxxxxxxxxx        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                           xxxxxxxxxxxxx        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                            xxxxxxxxxxxxx        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                           xxxxxxxxxxxxxx        xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                        xxxxxxxxxxxxxx        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                          xxxxxxxxxxxxxx        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                          xxxxxxxxxxxxxx        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                           xxxxxxxxxxxxxx       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                           xxxxxxxxxxxxxx       xxxxxxxxxxxxxxxx>smallRNA(se3)                                                  <xxxxxxxxxxxxx       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                             xxxxxxxxxxxxxx       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                           xxxxxxxxxxxxxx       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                          <---------DEAR3(1)       <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                              xxxxxxxxxxxxxxx       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                     <----------DOF2<xxxxx     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                       xxxxxxxxxxxxxxxx>smallRNA(i)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                       xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxx>smallRNA(i)--------->DOF5.7(2)      ------>ZmHOX2a(1)      xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxx>smallRNA(i2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                   xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxxxx>smallRNA(si3)  <xxxxxxxxxxxxxxxxsmallRNA(i)             xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   --------->ARR11(3) xxxxxxxx ---->YAB1xxxxxxxxxxxxxxxx>smallRNA(i)          <---------ARR14(2)        <---------ARR11(3) xxxxxxxx -------CCA1(2)------>NtERF2<xxxxxxxxxxxxxxxxsmallRNA(s)     --------->MYB52(1)xxxxxxxxxxxxxxxx>smallRNA(i) x>smallRNA(fl3)------>MYB83<-----------HVH21   --------->ARR14(2)       <---------At4g35610 xxxxxxxx ->WOX13(1) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<-----------ARR10       xxxxxxxxxxxxxxxx>smallRNA(s)x xxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxx xxxxxxxxxxxxsmallRNA(i2)<---------ATERF1(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     <xxxxxxxxxxxxxx xxxxxxxxxxxxxxx>smallRNA(i)<---------RAP2.6(3)<---------CCA1(2)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   atctcttggagagtcgccaaccatgggagccgtcaacgttcgtagaagcctatctcctctacataccgaaatggaagctcttctttgggcgatgaagtgc  6073600          xxxxxxxxxxxxxxxx>smallRNA(s)         --------->At4g35610      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      <---------At4g35610 <---------WOX13(1) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxxxxx>smallRNA(si3) ------->ATHB12 -------YAB1 xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) -----AtLEC2      <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxsmallRNA(s) --TEIL <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxx>smallRNA(s2) xxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxx>smallRNA(s2) xxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxx>smallRNA(i2) xxxxxxxxxxx>smallRNA(le3) xxxxxxxxxx>smallRNA(le3)                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxx>smallRNA(si3)                             <---------TOE2(2) xxxxxxx>smallRNA(se3)                               ------->TEIL xxxxxxxxxx>smallRNA(fl3)                         --------->ANAC58 xxxxxxxxx>smallRNA(se3)                          --------->ANAC55(1) xxxxxxxxxx>smallRNA(fl3)                         <---------ANAC46             <----------DOF2 xxxxxxx>smallRNA(fl3)                            <---------ANAC55(2)   <---------WOX13(1) xxxxxxxxx>smallRNA(fl3)                          --------->ANAC55(2)  <---------ARR14(2) xxxxxxxx>smallRNA(fl3)                           <---------TGA1a      --------->ARR14(2) xxxxxxx>smallRNA(se3)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    --------->LBD16 xxxxxxxxsmallRNA(se3)    <----------DOF2         --------->O2  <---------ARR11(3) xxxxxxxxx>smallRNA(le3)  ==================================bZIP_DOF--------->LBD16 xxxxxxxxx>smallRNA(si3) <---------ANAC58         ========================================bZIP_DOF xxxxxxxx>smallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  --------->ARR14(2) xxxxxxxxxxxsmallRNA(s)------->TEIL               <---------O2  <---------ARR14(2) xxxxxxxxxxxxxx>smallRNA(se3)                     --------->TGA1a  <---------LBD16            <------ xxxxxxxxxxxxxx>smallRNA(si3) ==============================bZIP_DOFxxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxx>smallRNA(si3)<----------DOF2     --------->ANAC58 <xxxxxxxxxxxxxxxxsmallRNA(i)     < xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)          <-----------HVH21 --------->ARR11(3)            ------- xxxxxxxxxx>smallRNA(le3)<---------ANAC58  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         <---------AHL20(2) xxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)     xxxxxxxxxxxxxxxx>smallRNA(i)   <-------   atgattggagcagataaccagaacgtagctttctttacagactgttcatgtcacgtatgtaaacaatatcccggattgactcttttgagttttaatttat  6073700                                                                           <---------ICU4      <-----                                                 --------->ANAC46          *TSS                <-----                                                 <----------ID1            <--------HAHB4      <-----                                         --------->AHL20(2)               --------->ICU4      <------NtERF2                                        --------->YAB1         --------->YAB1                 <------                                    <---------AHL20(2)        --------->AHL20(2)            ---------                                   --------->AHL20(2)--------->AHL20(2)   <---------YAB1  <---------MYB46(3) ---AHL20(2)              --------->CCA1(2)--------->YAB1 --------->AHL20(1)             <---------AtMYB61 ---------MYB46(3)     ----------->GT1  --------->AHL20(2)<---------AHL20(2)  <---------AHL20(2)<---- -->AHL20(2)         ---------->DOF2--------->AHL20(2)    --------->AHL20(2) <---------YAB1 <-------- --AHL20(2)   ------------------------>ANAC81  --------->MYB52(1)  <------------CBF<---------LBD16 --   atcggttgaaaaaaaaaaaaaaaaaaagataaacacatttaataaaaataaacgaaaaaataaaataaaaattggcattattatttgcgcattggtggcg  6073800                                         <---------At4g35610                                 <------NtERF2                                --------->LBD16                                ------>NtERF2                               <---------ANAC46      --------->AHL20(1) ----ANAC58                   <---------LBD16        <---------AHL20(1) ----ANAC58                   <------NtERF2          <---------AHL20(2) ----ANAC46                --------->ATERF1(1)       --------->AHL20(2) -----------------TaNAC69(2)--------->DEAR3(1)--------->ANAC58                             --------->HSFB2a(2) -->TGA1                   <---------ABI4(2)  --------->ANAC58                       --------->ARR11(3) ---GAMYB--------->GLK1(1)<---------ATERF1(1) --------->ANAC46        >>>>>>>>>TBF1  <---------GLK1(2) -DEAR3(1)          <------ZmHOX2a(1)    --------->At4g35610       >>>>>>>>>TBF1 <---------MYB52(1) ------->YAB1     --------->ALFIN1      ----------->RAV1(1)<----------ID1  --------->At4g35610      <   ttgataatgggatgtccaaggaggagggaagcgccgggattgcagcataagcaaatttattaagacgaagaagaagaagctccattagattttgcagaac  6073900                                                           ------>ZmHOX2a(2)                                                          <------ZmHOX2a(2)                                                         <---------ARR14(2)                                                         --------->AGP1                                                         --------->ARR11(3)   <---------ANAC58                      --------->KAN4(1)    --------->At4g35610           <---------ICU4                 --------->ANAC58          <---------ZAT2<---------ARR11(3)   <---------ANAC58       --------->ARR11(3)    --------->ANAC58            <---------AGP1  --------->ATHB12       <---------ARR11(3)    --------->ANAC58 --------->At4g35610        -------->HAHB4   ---------->DOF2    <---------KAN4(1)    <---------At4g35610          <---------YAB1      <-------- --------->YAB1  --------->ANAC46     <---------WOX13(1) --------->ARR14(2)<---------WOX13(1) ---------ATHB12 --------->ANAC58   --------->ATHB12   ----------->ARR10--------->ICU4   <---------ARR14(2)   aaatcaaaagaacttcaacaaggaatattgcaagaaattgattgaagctgctcgaattagatctgtaagtgaaaatgattgctcgacttcgaattctggg  6074000                                                                              <---------ANAC58                                                                              <---------ANAC58                                                                             --------------->AtSPL3                                           ---------->TaMYB80                --------------->AtSPL8                                           <---------KAN4(2)              <---------HSFC1(2)                                           <---------ARR14(2)             --------->HSFB2a(1)                              <---------YAB1     <----------DOF2          --------->HSFC1(2)                            --------->YAB1 --------->ARR14(2)            ------->TEIL                           <-------TEIL    --------->GLK1(2)         <---------TOE2(3)           <---                        --------->ICU4 <------ZmHOX2a(1) <---------TOE1(3)<---------HSFB2a(1)    <--- -LBD16            ----------->GT1    ----------->GT1 <<<<<<<<<MYB98--------->MYB52(1)           <---   ttttttgttttgttttttatggggtaatattcatgagagaaggagaatatgcttttgttagggttctgtctaacgaattttcgtactagtcactaagttg  6074100                                                <-------TEIL         <----------DOF2                       --------->CCA1(2)      <-----------GT1                          --------->GLK1(2)     <-----------GT1                  <---------AHL20(2)    <---------AHL20(2)                --------->ATHB12                --------->GLK1(2)            --   --------->AHL20(2)                 --------->ATHB51       <---------ATHB12                      <- ------ANAC58                         --------->AHL20(2)  <---------AHL20(2)                 <------- ------ANAC58                        --------->ICU4       --------->AHL20(2)                <-------- ------ANAC46                     <------ZmHOX2a(1)      --------->AHL20(2)<---------MYB52(1)<-------   cttaattttatctttctgggtttttgtttggagggaggaattatttgagattcgaagaaataaatcatggagtttctgtttgtgtaaatgtttctcaggt  6074200                                                                                     <---------AHL20(2)                                                                                 <--------HAHB4    <-                                                                                 <---------ICU4    --                            <---------ARR14(2)                                   --------->YAB1    <-                        <---------LBD16                                        --------->GLK1(2)   -- --------->GT1       --------->CCA1(2)       <----------DOF2             --------->LBD16       ------ --------ANAC46<---------HSFB2a(2)   <---------ARR14(2)                 <---------HSFB2a(2)  -------- --TOE1(2)     --------->HSFB2a(2)   --------->ARR14(2)                 --------->HSFB2a(2)  <------- ---RAV1(2)    --------->HSFC1(1)   <---------HSFB2a(1)                 <---------ANAC46     <------- --TOE2(2)     <---------HSFC1(1)   <------ZmHOX2a(1)                  <---------LBD16  <---------YAB1   tttgtgaaaatttgtttctagagatttggggaaatggaggattcgagctctatcgattcgattttggaatttttgcggaagaatcattttatgagagctg  6074300  Previous    Next  AGI:  At3g17750.1    Description:  protein kinase family protein. similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G73460.1); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G73450.1); similar to putative protein kinase [Oryza sativa (japonica cultivar-group)] (GB:AAT77851.1); similar to hypothetical protein OsI_012907 [Oryza sativa (indica cultivar-group)] (GB:EAY91674.1); similar to Os03g0719500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051095.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Prot Range:  from: 6073775    to: 6078728    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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