Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                <------                                                                                         <-------MYC4                                                                                         ------->PIF5                                                                                         -------->ABF1                                                                                         ------->MYC4                                                                                         <-------PIF5                                                                                         <-------MYC3                                                                                         ------->MYC3                                                                                         ------->MYC2                                                                                         <-------MYC2                                                                                        --------->ANAC55(2)                                                                                        --------->TGA1a                                              ---------->DOF2                           <---------TGA1a                                           --------->LBD16                              <---------O2       <-------GAMYB                       ------>NtERF2                                <---------ANAC55(2) <---------MYB46(3)                       --------->ANAC46                              --------->ANAC46 --------MYB52(1)                      --------->GLK1(2)                                ============= -----MYC3                             --------->ARR14(2)                               ============= ---->MYC3                             <---------ARR14(2)                               --------->O2 ------O2                            ----------->ARR10                                  ============= ----->O2                        --------->ANAC58                                   <-----------GT1 ------TGA1a                     --------->ANAC58      --------->ANAC58           <---------AHL20(2) ----->TGA1a      --------->ZAT14----------->GT1       --------->ANAC58     --------->YAB1   <------- -->HVH21 *TSS    <---------ZAT14--------->ANAC46      --------->ANAC46    <---------ATHB12  <-------   cgtttgttcagttgtatcagtgcagagcatataacaggcaaaatccgccaaagttacaagcatttgattttgttccactcatattttaacacgtggcttt  6044600                    ------>NtERF2                   <---------RAP2.3(1)                  <---------ANAC58                  <---------ANAC58                  <---------RAP2.3(2)                  <---------RAP2.6(2)              <-------GAMYB             <---------MYB46(3)             --------->MYB55(2)             --------->MYB111(2)             --------->MYB46(2)             --------->MYB111(1)            <--------P          <------MYB46(1)          <------MYB83         <---------AtMYB61         --------->MYB111(2)         --------->MYB46(2) ----DOF2--------->MYB59      --------->MYB55(2)                                         --------->ANAC58 ====bZIP_DOF--------->MYB52(2)<-------GAMYB                                             --------->ANAC58 =====================MYC_MYB --------->MYB52(2)         <---------TOE2(3) --------->bZIP60(1) ------ ====================MYC_MYB  <---------MYB46(3)---------->DOF2     <---------GLK1(2)    ----------->GT1 --ANAC58--------->MYB111(1)  <-----------RAV1(1)      <---------MYB52(1)  <---------bZIP60(1)------- --ANAC58<---------MYB46(3)   --------->MYB111(2)     <----------DOF2--------->GLK1(2) ---------->DOF2   agtacttgggtttggtagttgcggcccattgtttgttgggcttaataactcaaagcctttaggtttttgagattctgacatcaaatttagaaagcaaaaa  6044700                      --------->At5g28300                     <---------MYB46(3)                   <---------ANAC46                  <------MYB46(1)                  <---------MYB46(3)                  <------MYB83                 --------->MYB111(2)                 <---------DEAR3(1)                 <---------AtMYB61                 --------->MYB46(2)                 --------->MYB55(2)                 --------->MYB111(1)                 <---------MYB46(3)                                                            <-----                <---------MYB55(1)                              <---------bZIP60(1)           -------                <--------P  --------->YAB1                --------->DAG2                  --------->AHL20(2)               <---------ANAC58              --------->LBD16    <---------TGA2(1)        <---------AHL20(2)               <---------ANAC58             <---------HSFB2a(2) --------->bZIP60(1)--------->YAB1              --------->ATHB12              --------->HSFB2a(2)--------->MYB59    <---------YAB1 --->DAG2     <---------MYB46(3)   <---------AHL20(2)    ---------->DOF2    <---------TOE2(3)-------- --->DOF2     --------->MYB55(2)  --------->AHL20(2) <-------TEIL          --------->YAB1--------->AHL20(2)   gagggagagagcatattggttggtggtaaatgacaattttatatatccagaagagttcataaagttatgtcatcgaataatgttttcataaataaataaa  6044800                                                        <----------DOF2                                                     ------>ZmHOX2a(2)                                                    <---------GLK1(1)                                                    --------->GLK1(1)                                                    <------ZmHOX2a(2)                                                   --------->ARR11(3)                                                   <---------ARR11(3)                                                   <---------ARR14(2)                                                   <-----------ARR10             <---------YAB1                      --------->AHL20(2)           <---------AGP1              <-----------GT1                  --------->ICU4                   --------->ARR14(2)      --------->AHL20(1)        --------->HSFB2a(2)                       <---------ARR14(1)      --------->ATHB51   <---------ANAC58   <---------AHL20(2)          <---------CCA1(2)       <---------ICU4   <---------ANAC58<---------ICU4              <---------LBD16            <---------AHL20(2)  <-------TEIL  --------->AHL20(2)          ---------->DOF2               --------->AHL20(2) ----AHL20(2)   --------->YAB1             --------->ARR14(2)            --------->ICU4 -->YAB1<---------HSFB2a(2)             --------->TOE2(3)     <-----------GT1 <---------AHL20(2) ->AHL20(2)   --------->AHL20(2)  <----------DOF2--------->LBD16    --------->YAB1--------->YAB1<----   aatgtgcgttttagaaaataatatttatttcatcgtctttttccataaacgcggatctctttattcacactcttaattattttatcatatgagacaattg  6044900                              <---------ANAC46                                   <---------YAB1                              <------MYB46(1)                                 <---------YAB1                             <---------MYB46(3)                             <---------ICU4                             --------->MYB46(2)                            <---------YAB1                       <---------ANAC46                                  --------->YAB1               --------->TOE2(3)                   <----------DOF2       <---------ICU4               --------->TOE1(3)     --------->GLK1(1)                  --------->ICU4         ------              ----------->RAV1(2)    <---------GLK1(1)  --------->ZAT6  <---------ATHB12   <---------ARR14(2) -------------------TaNAC69(2)<------MYB83     --------->KAN4(2)      --------->GLK1(1)    --------->ARR14(2)   catataaaaaaaaaaaacctgaactgtgtgtttggtgagaattccagtttattctttttcactaatgctcagaaatcatcattcttatttggaaatatgc  6045000                                                                    <---------TOE1(3)                                                             <---------GLK1(2)                                                            <---------HSFC1(2)                                                            --------->HSFB2a(1)                                                            <---------ZAT2          <<<<<<<<<<<<<<<<<LFY                              <------NtERF2  <-----------GT1     <-----        *TSS        ---------->DOF2                         <---------HSFB2a(1)               <------    --------->AHL20(2)            --------->DAG2            --------->At4g35610               <------    <---------AHL20(2)  <---------ARR11(3)                  --------->HSFC1(2)              <--------    --------->AHL20(1)  --------->ARR11(3)---------->DOF2   <---------At4g35610        <----------DOF2 --->ZAT18--------->ANAC46       ---------->DOF2 --------->ZAT6     <---------TOE2(3)  <---------DAG2   actaaataaaatacacaatggacaaagctcttggataaagttttcaaagtaacacaagaggcagcttcttgaggttttctctcttccaacttttttgctt  6045100                                  <---------ANAC46                <-----------GT1                                 <-------TEIL                  ----------->GT1                              --------->At4g35610       <------ZmHOX2a(2)                              --------->HSFB2a(1)       --------->CCA1(2)                              <---------HSFC1(2)       <---------AGP1                       ---------                              <---------HSFB2a(1)      --------->AGP1                    ------>ZmHOX2a(1)                              <---------ZAT2 <-------TEIL------>ZmHOX2a(2)             <---------ANAC58 -----DOF2                    <---------At4g35610      <---------ARR11(3)              <---------ANAC58 ---ANAC58             <----------DOF2--------->ATHB12 <---------ARR14(2)        <---------AHL20(2) ---ANAC58             --------------------->WRI1      --------->ARR14(2)     --------->TOE2(3) ---GT1  <---------TOE2(3)    --------->HSFC1(2)       --------->ARR11(3) <----------DOF2--------->AtLEC2   tacttactactgaggttttctattcctttggaagcttcgttgatgggttcaacacaagatctaaaatgtaacatttcttttcttaaatttcctgcaaagt  6045200                                                  <---------ALFIN1                                               <---------SPL7                                              <---------ANAC58           --------->MYB52(1)                                        --------->DAG2      ----------->HVH21                                   --------------------->WRI1<---------WRKY18(1)    --------->O2                                   ------>ZmHOX2a(1)       <----------DOF2      --------->ANAC58                                  <---------------AGL15    <---------WOX13(1)   --------->ANAC58                                  --------->TOE2(3)       <---------ANAC58 --------->ANAC58                                  --------------->AGL15   <---------AtLEC2 --------->ANAC46                                ---------->ID1<---------ANAC46      --------->CCA1(2) <---------REM1(1)           <----------DOF2  <---------ANAC58     --------->ARR14(2) ->DOF2              <-----------GT1   ---------->DOF2    <---------ANAC58 --------->ANAC58       ---   tcgatgtagttcatgtttttttttttccattcttttccttataaagtgtcgtccacatttgcttgacgggatacaaaacgaaacccaagtctctgtcttc  6045300                                  <----------DOF2                                  <---------DAG2                                 <---------ANAC58                                 <---------ANAC58                               <-----------GT1                          <---------ICU4           <<<<<<<<<TBF1 <---------YAB1                      --------->ARR11(3)      <----------DOF2    --------->ICU4          ------>ZmHOX2a(1)   <---------GLK1(1)   ------>ZmHOX2a(1)   --------->YAB1   <-----------GT1      <---------GLK1(2)              --------- ------->ID1          <XXXXXXXXXXXXXXXXXXXXMIR3933           <---------ARR11(3)--------->AHL20(2) <--   gtctccttctttcttcttctctctgtcatcattttgcttttttttcttctcctacatgccctagattttgggtttctgaaataaaaaatggctcacacta  6045400                      <---------ANAC46                        <-----------GT1                <-------           --------->LBD16                                   ----------->HVH21               --------          <---------HSFB2a(2)                             <---------ARR14(2)              --------->ANAC46          --------->HSFB2a(2)                         <---------LBD16                    <---------LBD16          --------->HSFC1(1)                         --------->MYB52(1)                 <---------ALFIN1 <----------DOF2      <---------ANAC58              ----------->HVH21                  <---------REM1(2) >ZAT6    <---------HSFC1(1)                        --------->WRKY12                   <---------ZAT14 ----ZmHOX2a(1)       <---------ANAC58     <----------DOF2--------->ARR14(2)   <----------DOF2   ----   ggactttcacttccagaaaccgtagcgtttctctctcaaacccatctttctccattgacggatttgacaactcaactgtgactttaggctacacgggtcc  6045500  Previous    Next  AGI:  At3g17680.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G48405.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN67913.1); contains InterPro domain KIP1-like (InterPro:IPR011684) Range:  from: 6042953    to: 6044510    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g17690.1    Description:  ATCNGC19 (cyclic nucleotide gated channel 19); calmodulin binding / cyclic nucleotide binding / ion channel. Identical to Putative cyclic nucleotide-gated ion channel 19 (CNGC19) [Arabidopsis Thaliana] (GB:Q9LDR2); similar to CNBT1 (CYCLIC NUCLEOTIDE-BINDING TRANSPORTER 1), calmodulin binding / cyclic nucleotide binding / ion channel [Arabidopsis thaliana] (TAIR:AT3G17700.1); similar to hypothetical protein OsI_021325 [Oryza sativa (indica cultivar-group)] (GB:EAZ00093.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63236.1); similar to cyclic nucleotide gated channel [Malus x domestica] (GB:BAF95185.1); contains InterPro doma Range:  from: 6045008    to: 6048494    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version