Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100      <---------YAB1    --------->ICU4  --------->YAB1        <-----------RAV1(2) --------->ICU4    --------->ARR14(2) ---ARR11(1) --------->ANAC58                                                --------->DAG2 >TEIL  <---------WRKY38(1)             --------->GLK1(2)                   ---------->DOF2 -->GLK1(2)  --------->ANAC58       --------->YAB1               <---------TOE2(3)               <--- --ARR14(1) ------->GAMYB  <------ZmHOX2a(1)                  <---------ATHB12               <-------   taaatgatgatcaacgagcaagttccacaggagacgaatgaaaatcggagaaaatttccgacgaatcaaggtaatcggaaaaggagtttctaaaatcacc  5891900                                                                                                    -                                                                                                  ---                                                                                                  <--                                                                                                <----                                                                                                -----                                                                                               ------                                                                                               ------                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                               ------                                                                                               ------                                                                                               ------                                                                                              -------                          --------->ANAC58                                                    -------               <------NtERF2                                                          <----------DOF2              ------>NtERF2                                                         ------>NtERF2<---             --------->DEAR3(1)                                             <---------ZAT2    -------             ----------->HVH21                              <---------MYB52(1)    <---------RAP2.6(2)             ------->GAMYB--------->ANAC58         <-----------------AGL1   --------->ZAT2   <-------           <---------At4g35610             --------->DEAR3(1)               --------->At4g35610------ -------DOF2--------->DEAR3(2) <---------ALFIN1 <---------DAG2              <---------At4g35610------ ----GT1   --------->At4g35610--------->MYB46(3)<----------DOF2 <---------ZAT6  --------->ALFIN1-----   tttgaaggaatacagccgacgttaagacaagtaccaccgagagcgcctcgcttttcgatacaggtagtcttaagaccgagctgtgccgctttaatcgccg  5892000                           ----------->TGA1                         --------->YAB1                        --------->ICU4                        <---------ATHB12                     --------->DEAR3(1)                    <------NtERF2                   <---------ATERF1(1)                   --------->LBD16                   --------->ABI4(1)                  <---------DEAR3(1)                  <---------ATERF1(2)                  --------->DEAR3(1)                  --------->ATERF1(2)                  --------->RAP2.6(2)                  --------->RRTF1(2) -------->bZIP60(2)------>NtERF2 -------->RAV1(1) --------->RAP2.3(3) -------ALFIN1    --------->RAP2.3(2) -----ATERF1(1)   --------->RRTF1(3) ---->ABI4(1)    --------->ORA47(2) --->ANAC46      --------->RAP2.3(1) --->RAP2.6(2)   --------->ERF1 --->ATERF1(2)   --------->RRTF1(1) ----ATERF1(2)   --------->ATERF1(1)                ----------->HVH21 --->RAP2.3(2)   --------->RAP2.6(1)             <------ZmHOX2a(2) --->RAP2.3(3)   --------->DEAR4(2)             --------->ARR14(2) --->RRTF1(3)   <---------At4g35610             <---------ARR14(2) --->RRTF1(2)   <---------ATERF1(1)         <------NtERF2                                          -- -->ERF1 <---------HSFB2a(2)               <-----------HVH21                                  ------- -->ORA47(2)    --------->At4g35610  <-------GAMYB------>ZmHOX2a(2)                           ------- ---NtERF2--------->LBD16<---------ICU4   --------->ETT(2)     --------->ARR14(2)      <---------ARR14(2) -->RAP2.3(1)  --------->DEAR3(1)<---------bZIP60(1)----------->TGA1                   --------->ARR14(2) --ATERF1(1)<------ZmHOX2a(1)    --------->bZIP60(1)------>ZmHOX2a(1)   --------->ALFIN1    --------- --->DREB2C(2)--------->MYB46(3) <---------O2   --------->ARR11(3) --------->LBD16     --------->GLK1(2) --->DEAR3(1) --------->DEAR3(2) --------->O2 <---------DEAR3(2)   ------>NtERF2---------->DOF2   <XX ->NtERF2--------->HSFB2a(2) ----------->STF1<---------TOE1(2) <---------ARR14(2)     <---------GLK1(2)   ccacataacctccaggaccgccgccgatgatgacgacgtcgttgtcgtcggatcctgacgaagcgaagccgcgagtgagggagaaagagaatctgaaagc  5892100                                                                       <---------YAB1                                       <---------DAG2        <---------ATERF1(1)                                    --------->ANAC58        --------->DEAR3(1)                                    --------->ANAC58     --------->ANAC58                               --------------->AtSPL8    --------->ANAC58  --------->ALFIN1             <---------------AtSPL8    --------->ANAC46 ------->ATHB12                <---------------AtSPL3 --------->At4g35610  <-----------RAV1(1) -->ANAC58            <---------ANAC46 <----------DOF2--------->ZAT2   <---------MYB52(1) -->ANAC58      --------->ARR11(3) --------->ZAT18    <---------ZAT2  --------->TOE2(3) ->DOF2         <---------ARR11(3) <---------ZAT18    <---------At4g35610 <---------YAB1         ---- XXXXXXXXXXXXXXXXXXMIR776     ---------->DOF2  ------>ZmHOX2a(1)  --------->DEAR3(1) <---------------   atcagtgggagaattagagatgtttctggtgagaaagtacgcttttctcctagctaagctcgccatcgccatcgttattgttgttgttgttgttgttttg  5892200             --------->HSFB2a(1)             --------->HSFC1(2)             <---------HSFC1(2)       --------->LBD16      <---------ANAC46                                    *TSS---------->DOF2 <<<<<<<<<TBF1 --------->GLK1(2)                         <----------DOF2              ---------->DOF2 ------>ID1  <---------HSFB2a(1)                 <----------DOF2          <----------ID1  <------ZmHOX2a(1) ---------ANAC81                 --------->CCA1(2)   ---------->ID1     ---------->DOF2--------->DAG2   ttcttcttccgtcgaagtttctgagagagagagagagatggagaagagagactttggctctttgaaaagtcgaataaagacgaaaacaaaaaggacctct  5892300                                                            --------->YAB1                                                       ------------>CBF                                                      --------->ANAC58                                                      --------->ANAC58      <---------YAB1                                                  --------->HSFB2a(2)     --------->YAB1                                               --------->GLK1(2)         --------->ICU4                                  --------->YAB1  <---------HSFB2a(2)    <---------YAB1                                  <---------ICU4<------ZmHOX2a(2)      --------->YAB1          <-----              <---------AHL20(2) <---------ATHB12------>ZmHOX2a(2)    <---------YAB1         --------       <---------LBD16       <---------MYB52(1)--------->ARR14(2)  --------->AHL20(2)     --------->TOE1(3)     <-----------GT1        --------->TOE2(3)  <---------ARR14(2)  <---------AHL20(2)     --------->TOE2(3) <---------DAG2     --------->AHL20(2)         --------->ARR11(3)  <---------YAB1      <-----------GT1 <----------DOF2    <---------AHL20(2)        <------ZmHOX2a(1)--------->YAB1   --------->AHL20(2)   tcgctttttccctgatttttttttaattttcgttaatcataactaagaggatccagaagcaataagcatattattatgatgatataatataaccctaata  5892400                                            --------->ZAT14                         <---------ICU4     <---------ZAT14   <---------ZAT2        --------->YAB1 --------->AtMYB61   --------->ZAT2  --------->ANAC46    --------->MYB46(3)   <---------At4g35610  <---------YAB1-------->P                          <---------YAB1   --------->At4g35610--------->YAB1 --------->WOX13(1)          <----------ID1    --------->ICU4 ----ATHB12       <-------TEIL  <---------YAB1                 <---------------AtSPL8 ->YAB1     <---------YAB1 <---------YAB1 --------->ANAC46--------->YAB1 --------->AHL20(1)        --   atccaagctgagtgatcatatacatcatcatcatatgatcaaccactacacaaacatatatcaaaatgggacaaatatgttagtgatttttaaaacatat  5892500                                                                                                 ----                                                                                            <--------                       --------->CCA1(2)                                                    ---------                      <---------ARR11(3)                                                    ---------                      --------->ARR11(3)                                            --------->TOE2(3)                ---------->DOF2             --------->YAB1 --------->CCA1(2)      <-----------GT1<--- -------->DOF2<---------YAB1    --------->ANAC46      ---------->DOF2           <---------WOX13(1)   acaaagtgaagatgtaatgaaagagatattagacacaaaactctgatcacaattttcaaagaaatgggtagagaattagttgattaacttaatcacctga  5892600       --------->TOE2(3)       --------->TOE1(3)       --------->YAB1  ------>ZmHOX2a(1) --------->TOE1(3) --------->TOE2(3) ----->GLK1(1) -At4g35610                                ------>ZmHOX2a(1)                                 -------- >At4g35610                           --------->YAB1     >>>>>>>>>GATA-1                  <---------- -->RAV1(2)                          <---------ATHB12  ----------->GT1             ------->TEIL   --- ------GLK1(1)                 --------->ZAT18    --------->AHL20(2)      --------->ZAT6--------->AHL20(2)   attccttaatcttaatcagtttttgtacataagtgctcaataatcctacagaataaatagataaaaaatggctataacacttatgaacattttaacaaca  5892700                                                                               <---------AHL20(2)                                                                               --------->AHL20(1)                                                                              <---------ATHB12                            <---------ANAC58                                  <---------ATHB51                          <-----------GT1                                     --------->AHL20(2)                      <---------DAG2                              <---------ICU4                   <- --->RAV1(1)          <----------DOF2                             --------->YAB1                  <-- -GT1      ------>ZmHOX2a(1)<---------ANAC58                     --------->ICU4--------->AHL20(2)<--- ------->DOF2--------->REM1(1)    <----------DOF2           ----------->GT1   <---------AHL20(2)<----   taaagaagaagtccttcatcttctctttttgccttccttttatttcatccaatatcagagagatgtaataatgtcatcaaataatttggccttgggaggg  5892800  Previous    Next  AGI:  At3g17240.1    Description:  LPD2 (LIPOAMIDE DEHYDROGENASE 2); FAD binding / dihydrolipoyl dehydrogenase/ oxidoreductase. Identical to Dihydrolipoyl dehydrogenase 2, mitochondrial precursor (LPD2) [Arabidopsis Thaliana] (GB:Q9M5K2;GB:Q8LBH6;GB:Q9ZRQ0); similar to dihydrolipoamide dehydrogenase 1, mitochondrial / lipoamide dehydrogenase 1 (MTLPD1) [Arabidopsis thaliana] (TAIR:AT1G48030.1); similar to dihydrolipoamide dehydrogenase 1, mitochondrial / lipoamide dehydrogenase 1 (MTLPD1) [Arabidopsis thaliana] (TAIR:AT1G48030.2); similar to dihydrolipoamide dehydrogenase precursor [Bruguiera gymnorrhiza] (GB:BAB44156.1); similar to mitochondrial lipoamide dehydrogenase [Popu Range:  from: 5889878    to: 5892258    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g17250.1    Description:  protein phosphatase 2C-related / PP2C-related. similar to protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT1G48040.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN60055.1); contains InterPro domain Protein phosphatase 2C-related; (InterPro:IPR001932); contains InterPro domain Protein phosphatase 2C; (InterPro:IPR015655); contains InterPro domain Protein phosphatase 2C, N-terminal (InterPro:IPR014045); contains InterPro domain Protein phosphatase 2C, manganese/magnesium aspartate binding site; (InterPro:IPR000222) Range:  from: 5892567    to: 5894452    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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