Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                            --------->ATHB12                                                                                         <------ZmHOX2a(2)                                                    <---------WOX13(1)                   <---------YAB1                                       --------->YAB1 <-----------GT1                   --------->ARR11(3)                           --------->LBD16<---------ICU4                                <---------ARR11(3)                         <---------LBD16 <---------YAB1                      ----------->HVH21                 ------>NtERF2        <------ZmHOX2a(2)                    <---------At4g35610                --------->ANAC46     --------->ARR11(3)                  <-----------RAV1(2)              <---------At5g28300    <---------ARR11(3)     --------->YAB1 --------->At4g35610      <   atgaccaagttccatttaccgccatattccggtctccaagatcatcattttttgatttacaatggtatctcaatggcagatgacccccaagatcattgta  5794000                                 <-----------RAV1(1)                              --------->LBD16                            <---------LBD16                          --------->ARR14(2)                  <---------ANAC58                                     <---------ARR11(3)                  <---------ANAC58                                     --------->ARR11(3)      <-----------RAV1(1) <---------ARR14(2)                      <------NtERF2 --------->ZAT6   <---------ALFIN1 <---------MYB46(3)    --------->ALFIN1<----------DOF2     <-----------GT1 -----------GT1   <-------GAMYB  <---------MYB46(3)       ------>ZmHOX2a(1)----------->GT1   tatcaccactgttgttcttgggttgtcgaaaccggatgttggagttggagggatgctatccttttggcctcgagatattgttacactaacacacatagtc  5794100                                                            <------------CBF                                                           -------->ATHB1                                                           --------->ATHB51                                                           <---------ICU4                           ------>ZmHOX2a(2)              <---------ATHB51                          <------ZmHOX2a(2)               --------->ICU4              <---------ARR11(3) <---------AHL20(2)       <---------AHL20(2)       <----------ID1    --------->ARR11(3)               <---------YAB1     --------->ANAC58    <---------ARR11(3)    ------------>CBF                    <-----------HVH21     --------->ANAC58   <---------GLK1(1)    ---------->ID1--------->ATHB12       <----------DOF2   ---------->DOF2      --------->GLK1(1)  <-----------RAV1(1)             <---------WOX13(1)   <----   actaagaaagccacaagttctactagagatcccatttttttttttttgttgcaatatgaaattattgtatatggatgaatgactctttcactcgatatat  5794200                         ----------->HVH21                        --------->LBD16                       --------->ANAC55(2)                       --------->ANAC46                       <---------ANAC58                       <---------ANAC58                                       <--------P                       <---------ANAC55(2)                                 <---------YAB1                       --------->HSFB2a(2)                                 --------->ICU4     <------                      <---------LBD16                           --------->TOE2(3)    ------->TEIL    <-----------GT1<---------GLK1(1)               ----------->GT1     <-----------HVH21      <------ -------GT1    <-----------GT1      --------------->AtSPL8--------->AHL20(2)--------->ATHB12  <------   actgtgttaccagtttattacatttccgtaacatgttttttgttcttcatatgtggtcaaataaaaacttaaatgtcatggttgatgtatatgtagtcaa  5794300                                                                                              -------                                                                                              -------                                                                                              -------                                                                                              -------                                                                                              -------                                                                                              <------                                                                                              <------                                                                                      --------->ARR11(3)                                                                                      <---------ARR11(3)                                                                                ------>ZmHOX2a(2)                                                                               <------ZmHOX2a(2)                                                                           --------->SPL7  <------ZmHOX2a(2)                                                               --------->LBD16--------->ARR14(2)   <---------ZAT6                                             ----------->GT1 <---------ARR14(2)----- ---WRKY12                ---------->DOF2            --------->LBD16     <---------SPL7<------ZmHOX2a(2) ---WRKY38(1)           <---------YAB1        ---------->DOF2 <---------ANAC55(2) --------->LBD16  -- ---WRKY45          <----------DOF2 --------->YAB1  --------->LBD16      <-----------HVH21<----------   ctatggtgttaagcccaataagctttataaaagcccaataacattttcaaaagcccgagaaaacccgtgaaactacgtccgatccgaagatcgatcacgc  5794400    <---------MYB52(1) -->ANAC58 -->ANAC55(2)                                                 --------->GLK1(1) -->ANAC46                                                    <---------GLK1(1) -->O2                      <---------YAB1                   <---------GLK1(2) -->ANAC58                 <---------AHL20(1)           <------NtERF2 ---ANAC55(2)           <----------DOF2                 ------>NtERF2                              <- ---O2               ------>ZmHOX2a(2)    *TSS         --------->ANAC58                            -- ------>HVH21        =======================HOX2a_HOX2a--------->ANAC46                      -------- ------->GLK1(2)    <------ZmHOX2a(2)------>ZmHOX2a(1)--------->ZAT18                        <------- -HVH21             ========================HOX2a_HOX2a--------->ANAC58                <---------AtMYB61   gactctgttatttagaacgacgatcgcattatttttctcctaataaacaaaacgagcccgccagatttctctgagacagtgattcagttttggttttgga  5794500                                                  ------>NtERF2                                                  --------->LBD16                                                 <---------ANAC46 ------>MYB83                                    --------------->AGL15                        ------- ------>MYB46(1)              <---------------AtSPL8    --------->YAB1                        <------ --------MYB59        --------->At4g35610       <-----------------AGL1                        ------- ------->TOE2(3)      <---------At4g35610       ----------------->AGL1                       <------- ->HSFB2a(2)       <-------TEIL                 <---------LBD16                         <---------TOE1(2) --HSFB2a(2)      --------->GLK1(2)            <---------At5g28300      <---------YAB1 ------>ZmHOX2a(1)   acctaattctctctcaagagattcagctaagatgagtactatgaaattttgccgcgaatggtaagagctctcttatgctaattctgttcctagtttctgg  5794600                                                                                                    -                                                                                             <-------                                                                                           --------->LBD16     <---------ALFIN1                                                                     <---------ANAC58   ------->TEIL                                                                           <---------ANAC46 -->HSFC1(1)                                        <---------AHL20(2)        <---------TOE2(3)   <-- ---HSFB2a(2)                                       --------->AHL20(2)   <----------DOF2  <---------ANAC58 -->HSFB2a(2)                                     ------->TEIL   ---------->ID1           <---------ANAC55(1) --LBD16   <---------ZAT2                    <---------AtLEC2  <-----------RAV1(1)------->TEIL<------   aattgcacctctctgctcgtctaggttttttcaaagtttcgaaatttgcatgaattttttagtttttgttgtttacttttgatgtatttcttccgtggtt  5794700                 ----------->GT1          <--------P          <---------WOX13(1)        <---------MYB46(3)                  <----------DOF2       <---------TOE2(3)                   <---------DAG2                   <---------ICU4 -------->MYB46(3) ----------->HVH21 <---------------AtSPL8              --------->YAB1 --MYB46(3)     <---------TOE2(3)    --------------->AtSPL8              --------->TOE2(3) ---------GT1   --------->DAG2   --------->DAG2                       <----------DOF2 -GAMYB<---------YAB1           ---------->DOF2 <-----------GT1       ------>ZmHOX2a(1)   gaaccatctatggttgataaggtgacaattcgctaaaagtgagtaccttttttcgaattttgtttttgggtcctttcttaattgcattgttgtttctgtt  5794800                                                                <---------ANAC58                                                                <---------ANAC58                                                              <---------YAB1                                                          ------>ZmHOX2a(1)                                                    =============HOX2a_HOX2a                                                    <------ZmHOX2a(2)                                                   <---------ARR14(3)                                                   --------->ARR14(3)                                    ========================HOX2a_HOX2a                                    <------ZmHOX2a(1)------>ZmHOX2a(2)                                   <----------ID1  <---------ARR14(2)                                 <------ZmHOX2a(1) --------->ARR11(3)                                 ==========================HOX2a_HOX2a                             ------>ZmHOX2a(1)     <---------ARR11(3)                         ------->TEIL  ---------->DOF2 ------>ZmHOX2a(1)            <-----------RAV1(2)                         <---------ARR14(2)        --------->ARR14(2)        <---------YAB1                         --------->ARR14(2)        <---------GLK1(2)  --------->At5g28300                   --------->GLK1(2)=======================HOX2a_HOX2a<---------RAP2.6(3)               <-----------GT1   ===========================HOX2a_HOX2a    --------->YAB1            --------->YAB1   ==============================HOX2a_HOX2a--------->LBD16         ----------->GT1<---------CCA1(2)        ----------->ARR10   --------->ANAC55(2)         --------->ANAC55(2) ===============================HOX2a_HOX2a   --------->ICU4      <------   tgattttggttcagtaataacattctgtatcctaaggaggacaaagaacagaagatcctcctctatgcttgccgtaattgtgatcaccaggtatagcttt  5794900  Previous    Next  AGI:  At3g16970.1    Description:  self-incompatibility protein-related. similar to self-incompatibility protein-related [Arabidopsis thaliana] (TAIR:AT3G17080.1); similar to self-incompatibility protein 1 [Cucumis melo] (GB:ABY56091.1); similar to self-incompatibility protein 2 [Cucumis melo] (GB:ABY56092.1); contains InterPro domain Plant self-incompatibility S1 (InterPro:IPR010264) Range:  from: 5793674    to: 5794096    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g16980.1    Description:  DNA-directed RNA polymerase II, putative. similar to DNA-directed RNA polymerase II, putative [Arabidopsis thaliana] (TAIR:AT4G16265.1); similar to DNA-directed RNA polymerase, subunit C11/M/9 [Medicago truncatula] (GB:ABD32320.1); contains InterPro domain Zinc finger, TFIIS-type; (InterPro:IPR001222); contains InterPro domain DNA-directed RNA polymerase, M/15 kDa subunit; (InterPro:IPR001529) Range:  from: 5794442    to: 5795833    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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