Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100              <-----------HVH21           --------->LBD16         <---------LBD16      <----------DOF2     ------>ZmHOX2a(2)    <------ZmHOX2a(2)   --------->AGP1   --------->ARR14(2)                  <---------AHL20(1)                   --------->YAB1   <---------ARR14(2)                  <---------AHL20(2)                 --------->AtLEC2   <---------ARR11(3)                  --------->AHL20(2)              <------ZmHOX2a(2)   --------->ARR11(3)                  --------->AHL20(1)   --------------->AGL15   <---------AGP1                     <---------AHL20(2)    --------->TOE2(3)   <-----------ARR10             --------->TOE2(3)  ----------->GT1   --------->ARR11(3)  <---------CCA1(2)             <---------ANAC55(2)----------->GT1    <---------ARR11(3)            < ----------->ARR10         --------->YAB1          <----------ID1    <------ZmHOX2a(1)             << -----ZmHOX2a(2)          <-------TEIL--------->AHL20(2)    --------->TOE1(3)                   -----   gatcagatctttccggtcactaaattgattcatcacctaaataaatttgaaaaacgataaaacctaaaataggatcatgcataatatagatgctatttcg  5764300              ------>ZmHOX2a(2)             <------ZmHOX2a(2)            <---------ARR11(3)        -------->P            --------->ARR14(2)       ------->GAMYB            --------->AGP1          --------->MYB46(3)                             <-----------ARR10            --------->ARR11(3)      <---------MYB55(2)                             <---------ARR11(3)            <---------AGP1<---------GLK1(2)                                --------->MYB46(2)    <---          ----------->ARR10--------->GLK1(2)                               ----------->GT1 <---------      --------->ATHB12 ------>ZmHOX2a(2)                                   --------->MYB52(2)    ---- ------ZmHOX2a(2)    <---------ARR14(2)             --------->YAB1       <--------P--------->ARR11(3) <<<<<<<<GATA-1      --------->ARR14(2) ------->GAMYB                  ----------->GT1    <---------DAG2 ---->HSFB2a(2)      <---------AGP1 <---------MYB111(2)            ---------->DOF2--------->RVE1(1) <   cgatccattgattagatctactagatcggaatctaacaacaacccaatagactataagaagattgaaatgaaagggttagttaaaaatctcacctttggt  5764400                                               ------->GAMYB                                              --------->ANAC46                                              --------->ANAC58                                              --------->ANAC58                              ---------                                           <---------WRKY38(1)                              <--------                                          --------->MYB46(3)                       --------->ABI4(1)                                          <---------ATHB12                         ------>NtERF2                                         --------->ANAC58                         --------->ANAC58                                      --------->LBD16                             --------->ANAC46                ---------->DOF2      --------->ANAC58                             ------->GAMYB             ------>NtERF2           --------->ANAC58                             --------->DEAR3(1)            --------->ANAC58         --------->ANAC55(2)                          --------->RAP2.6(2)          --------->AtMYB61          <---------ANAC55(2)                          --------->DREB2C(2)          <---------ALFIN1          <---------LBD16                               --------->DEAR4(1)       --------->AtMYB61          --------->ARR14(2)                              --------->ANAC58       <---------ALFIN1           <---------ARR14(2)                             --------->MYB46(3)    <------ZmHOX2a(1)           --------->HSFB2a(1)    ------>ZmHOX2a(1)       --------->AtMYB61    <---------PCF5              <---------HSFB2a(1)    <----------DOF2         <---------ALFIN1<----- ------LBD16--------->ANAC58    ----------->ARR10 --------->ANAC58            <---------MYB55(2) -DOF2--------->MYB46(3)<---------GLK1(1)--------->ANAC58                     --------->MYB46(3) ----->SPL7 --------->ANAC46  <---------MYB52(1)  --------->ANAC58    --------->ARR14(2)    --------- ---------MYB52(1)    <------ZmHOX2a(1) --------->WOX13(1)            --------->AGP1 <---------ALFIN1   ccggcaggaccaccacgccaaagaggagttcggatagttccgcaatcaacgcaagtccttttggtatcaccagaactactaccaccgccacttccgctgc  5764500                                                                    ------>ZmHOX2a(2)                                                              ----------->RAV1(2)                                                          <---------ARR11(1)     <---------ARR14(2)                                   ------->TEIL     --------->ARR14(2)                                   --------->ARR14(2) <---------ZAT18                                          <---------TOE1(2) --------->ZAT14                  --------->LBD16         <-----------ARR10 <---------ZAT14                  ------>NtERF2           <---------ARR14(2)                      --- >LBD16                          --------->ANAC46        <---------CCA1(2)                        === -At4g35610                 --------->ZAT6               <---------ARR14(1)     <----------DOF2  ==== ----At4g35610     <---------ARR11(3) <------NtERF2    <---------ANAC58      --------->ARR11(3)  <--- >At4g35610    --------->YAB1   <---------LBD16        <---------ANAC58      <---------ARR11(3)<-----   tactgcagttctcgttatcaacatctgataactctccggcagagtcgagttttgttttcgtatcttctgatccctcagacatctttttttttttaagaga  5764600                                                            *TSS                                                      --------->MYB52(2)                                                    <---------MYB52(1)                                                    <--------P                                                   --------->At5g28300                                                   <-------GAMYB                                                  <---------MYB46(3)                                                  <---------DEAR3(2)                                                  --------->MYB55(2)                                                 <---------DEAR3(1)                                                 <---------ANAC46  --------->ZAT2               <xxxxxxxxxxxxxxxxsmallRNA(i) ----------->RAV1(1)                    <-  <---------At4g35610    <------ZmHOX2a(1)      <------NtERF2                                    <---  --------->At4g35610  --------->ANAC58        <---------RAP2.3(1)                           <-------  <---------ZAT2       --------->ANAC58        ------------>AtMYB77                        <---------AHL20(2) --->ZmHOX2a(2)        <---------TOE2(3)       <---------DEAR4(2)         --------->MYB52(1)--------- ===============================HOX2a_HOX2a   <---------RAP2.3(3)       --------->MYB46(3) <---------YAB1 ===============================HOX2a_HOX2a   <---------RAP2.3(2)   <---------AHL20(2)  <---------AHL20(2) ---ZmHOX2a(2)     --------->YAB1             <---------DEAR3(1)    --------->AHL20(2) --------->AHL20(2) ----GLK1(1)      <---------YAB1            --------->CCA1(2)  ------->GAMYB       <------ZmHOX2a(1)   tcggagcagagcaagttttgatgataaggaagagggagagagagagagacggcggttagtagcaacagaattaaacaaacggagaggaattttataattg  5764700                 --------->GLK1(1)                 <---------GLK1(1)                <---------ARR14(2)             <---------ANAC46            <------NtERF2            --------->ATERF1(1)                                                             ------>NtERF2           <---------ATERF1(1)                                                              ---------           ------>NtERF2                                                                   --------->ANAC58          <---------DEAR3(1)                                                               --------->ANAC58          --------->ALFIN1                                                                 --------->DEAR3(1)          <---------PCF2                                                                   --------->ANAC46          <---------RAP2.3(3)                                                              ------->GAMYB         --------->ATERF1(1)                                                              --------->DEAR3(1)       --------->ALFIN1                                                                   <---------MYB55(2)       <---------ANAC58                                                                   --------->MYB46(3)       <---------ANAC58                                                                  <---------ALFIN1       <---------DEAR3(1)                                                         <---------ANAC58       <---------ANAC46       <---------ANAC58                                    <---------ANAC58  <------ZmHOX2a(1) --------->TOE2(3)                                        <---------AHL20(2) -----ZmHOX2a(1)--------->ARR14(2)        <------------CBF                  --------->AHL20(2) ------TOE2(3) <------NtERF2  <---------ANAC58                              <---------AHL20(2) -----CBF<------NtERF2        <---------ANAC46                        <----------DOF2   ------>NtERF2 >ATHB51<---------ATERF1(1)  <---------LBD16                        <---------At4g35610<---------ALFIN1   aggaggaaggcgggggcggaaaccctagtatttcgggttatttgaattgactaaaataccctcgagcgggagcttttattaattttgtgccacccgccca  5764800                                                                                           --------->At4g35610                                                                                  <---------YAB1                                                                                --------->MYB52(2)---                                                                     <---------RAP2.6(2)   <---------At4g35610                                                                     <---------ANAC46     <---------DEAR3(1)                             <---------YAB1              <----------DOF2        <---------MYB46(3)--- >LBD16      --------->GLK1(2)                 --------->ZAT6       <---------LBD16--------->ATHB12 <   aaaacttataactaaaatctgaaacaatgttttgattttttgttttttaaaactagccgctttcaaattttgcggctagggtttgttattggtcgctgtc  5764900                                                                                                <----                                                                           --------->AHL20(2)   <----      --------->GLK1(2)                                                 --------->YAB1         <-----     --------->YAB1                                                    <---------YAB1          <----- -------->HVH21                                  <---------AHL20(2)  --------->YAB1---------->DOF2 --->ZmHOX2a(1)  --------->ANAC55(2)             <---------AHL20(1) <---------AHL20(2)      --------- <<<<<<GRF7    <-----------GT1<-----------GT1    --------->AHL20(2) --------->AHL20(2)    <----------   ctgacaataatctgttttcacgtttttttttttttcagtttttggttttattttatttctaatgtcaaaatttataataaactaataaagttttacgtcg  5765000                                                                                 <---------ICU4                            <---------AHL20(2)                                   --------->MYB52(1)                   <---------MYB52(2)                                           <---------ATHB51           <---------ICU4   --------->AHL20(2)                                  <---------AHL20(2) -----MYB46(3)     --------->MYB46(3)             --------->ATHB12   XXXXXXXXXXXXXXXXXXXX>MIR837-3P -----DEAR3(2)   ----------->RAV1(1)             <---------YAB1      <----------ID1 ----TOE2(2)    <----------ID1                 <---------ICU4    --------->YAB1--------->AHL20(1) ----DEAR3(1) --------->AtLEC2                 --------->YAB1    --------->AHL20(2)        --------->GLK1(2) >ANAC46  <---------ATHB12------->TEIL        --------->ICU4  --------->YAB1  --------->YAB1       -- -GT1<-----------GT1   <---------ATHB12   <---------YAB1    <---------YAB1  --------->AHL20(2)<------   gttttatttacaatcaatgcaacaaatgaattttttaaaaacttatgaatgatgactggattattaataaaaaaacaaaaaaataatggcaaaattctgt  5765100           <---------MYB52(1)                                                                      --         --------->ATHB12                                                                  <---------At5g28300       <<<<<<<<<<<<<<<<<LFY                              <---------ZAT18                  <----------     --------->RVE1(1)                                   --------->ZAT14           >>>>>>>>>TBF1   <-     --------->CCA1(1)                                   <---------ZAT14   ----------->RAV1(1)  ----- --------->GT1                                --------->YAB1             --------->At4g35610    <---- ---HSFB2a(2)          <---------YAB1        <---------YAB1              <---------At4g35610---------   aagataaatatccattgggctcaatttgatagtccaggcccatgagcatgataacgcagtacagttttttagttgagctacagaagaagaaattacagta  5765200  Previous    Next  AGI:  At3g16870.1    Description:  zinc finger (GATA type) family protein. Identical to GATA transcription factor 17 [Arabidopsis Thaliana] (GB:Q9LIB5); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G16141.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17469.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74414.1); contains InterPro domain Zinc finger, NHR/GATA-type; (InterPro:IPR013088); contains InterPro domain Zinc finger, GATA-type; (InterPro:IPR000679) Range:  from: 5763592    to: 5764660    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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