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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
ZAT6
<---------
STY1(2)
--------->
STY1(2)
<-----------
GT1
--------->
ATHB12
<---------
AHL20(2)
--------->
AHL20(1)
<---------
ARR11(3)
<---------
AHL20(2)
<---------
AHL20(2)
--------->
ARR11(3)
--------->
AHL20(2)
<---------
AHL20(1)
<---------
AHL20(1)
<---------
YAB1
--------->
AHL20(2)
--------->
AHL20(1)
--------->
ICU4
--------->
ARR11(3)
--------->
ARR11(3)
<---------
YAB1
---------->
DOF2
<---------
AHL20(1)
<---------
ARR11(3)
<---------
YAB1
--------->
ICU4
<---------
AHL20(2)
<---------
AHL20(1)
--------->
ICU4
<---------
At4g35610
--------->
AHL20(1)
--------->
AHL20(2)
----------->
GT1
------->
TEIL
--------->
ICU4
<---------
ARR11(3)
<----
---->
GT1
--------->
AHL20(1)
--------->
CCA1(2)
--------->
ZAT18
----------->
GT1
<---------
ICU4
tataccaaaaaaaaatattttttctagctagtgatatgattatgaattttatgtgtgctaattagtaaagagggaatatattatattggctattgattac
5676400
>>>>>>>>>
RAP2.2
--------->
ARR11(3)
<-----------
ARR10
--------->
AHL20(1)
----------->
RAV1(1)
<---------
ARR11(3)
<---------
ALFIN1
<----------
DOF2
--------->
ARR11(3)
<-----------
GT1
-------
GT1
----------->
RAV1(1)
<---------
HSFB2a(2)
<---------
AtLEC2
<
accctttctgcgacaacatatattgggaatatctaaacacatactcgttgagttgtcgaagtttatatcaccacatcgtgcatgcagtactaaatttcaa
5676500
<-----------
HVH21
--------->
TOE1(2)
<-------
MYC3
------->
MYC3
<---------------
AGL15
--------------->
AGL15
----------------->
AGL1
----------------->
AGL2
<-----------------
AGL1
<------
MYB46(1)
----------------->
AG
--------->
ALFIN1
>>>>>>>>>
EIN3
<---------
ARR11(3)
<-----------------
AGL2
--------->
At4g35610
--------->
YAB1
----------------->
AGL3
<---------
At4g35610
<----------
ID1
--------->
ARR11(3)
<---------
ANAC58
--------->
AHL20(2)
<------
MYB83
--------->
YAB1
<---------
YAB1
<---------
ANAC58
<---------
AHL20(2)
--------->
MYB59
<---------
YAB1
<---------
TOE1(2)
---------
YAB1
--------->
WOX13(1)
<---------
REM1(1)
<---------
YAB1
<---------
TOE2(2)
-
agattatagcttaccgaaaatagcaattaaacgtgtgagatgatgtaggtatacattggtttttattaataaacgactaatcgtatgatatttcttcaaa
5676600
--------->
ATHB12
<------
ZmHOX2a(2)
--------->
ATHB51
<-------------------
<---------
ANAC58
--------->
YAB1
--------->
LBD16
<---------
ANAC46
<---------
YAB1
<---------
LBD16
<---------
ANAC58
<---------
AHL20(2)
<---------
ARR14(2)
<--------
<---------
AtLEC2
--------->
AHL20(2)
======================
HOX2a_HOX2a
--------->
DAG2
<---------
YAB1
<---------
AHL20(2)
<------
ZmHOX2a(1)
--------->
TOE2(2)
--------->
DOF2
<---------
AHL20(2)
<---------
TOE2(3)
--------->
At4g35610
--------->
ARR14(2)
--------->
TOE1(2)
aaaaaagttgcatggatattattggacaaattatataatgttagaatcatacacagttgaaactacattttaggacccgggtttacgatcaaacctaggg
5676700
<---------
ICU4
---
<--------
HAHB4
<--
--------->
ATHB12
---------->
DOF2
--------->
YAB1
--------->
ATHB51
<---------
AHL20(1)
<---------
ARR11(3)
--------->
ICU4
--------->
AHL20(1)
--------->
ALFIN1
---
--------->
ANAC58
--------->
ARR11(3)
<------
ZmHOX2a(1)
<---
--------->
ANAC46
--------->
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
<---------
DOF5.7(2)
----------->
TBP
--------->
ZAT18
--------->
ARR11(3)
--------->
DAG2
<----------
DOF2
--------->
DAG2
==================
HOX2a_HOX2a
-
--
WRI1
----------->
GT1
--------->
ANAC58
--------->
AHL20(2)
<---------
AHL20(2)
------------>
CBF
<--
-
STY1(1)
---------->
DOF2
<---------
YAB1
<-----------
TBP
--------->
AHL20(2)
<------
ZmHOX2a(2)
-
acaattcaaattgtagaataaagtaaacgcattattagcgactttaaatatatagaaaagtgcaaaataaataggaggggcaagatcaataaaacttctt
5676800
<---------
AtLEC2
<-------
TEIL
--------->
At4g35610
<---------
At4g35610
--------->
ANAC46
------------>
AGL15
--------->
ANAC58
-------------
AGL15
<---------
ALFIN1
------>
HSFB2a(2)
*
TSS
----------->
RAV1(1)
--------------
AGL3
<---------
DAG2
--------->
ANAC46
--------->
ANAC58
-------->
AHL20(2)
<----------
DOF2
--------->
ANAC58
--------->
ANAC46
<-------
-------
HSFB2a(2)
--------->
ANAC58
--------->
ANAC58
--------->
ANAC58
<---------
AHL20(2)
---------->
TBP
--------->
ANAC58
---------->
DOF2
--------->
ANAC58
---------->
DOF2
<---
ctataaatagagctgcatgggggaagacacttta
tcacatccaaaaccaaaagcaacacaaacacacacaccaaaaaaaaaaaaaaaagcatttactttt
5676900
<---------
ANAC46
<------
MYB83
---------->
DOF2
------>
ZmHOX2a(2)
<------
MYB46(1)
--------->
YAB1
<---------
ARR11(3)
<---------
At4g35610
--------->
ANAC58
--------->
MYB46(3)
--------->
ARR11(3)
--------->
ZAT2
--------->
ANAC58
<----------
ID1
<---------
WOX13(1)
<---------
AtMYB61
<---------
ZAT2
---
DOF2
--------->
YAB1
<---------
ANAC55(2)
<---------
ANAC58
--------->
At4g35610
--------
GT1
--------->
TOE2(3)
----------->
HVH21
<---------
ANAC58
<-----------
RAV1(2)
aactcaagc
atggcaatgttaaagaacaaacacatgaccgtctcattgatcttggtgtgtctcgttgtggtgtctccaatggctgaggctcagcttggtc
5677000
<---------
AtMYB61
<---------
MYB46(3)
<------
MYB83
<------
MYB46(1)
<---------
DEAR3(1)
--------->
MYB111(2)
<---------
AtMYB61
--------->
MYB111(1)
--------->
MYB55(2)
<---------
AtMYB61
<---------
ANAC58
--------->
MYB46(2)
<---------
MYB46(3)
<---------
ANAC46
<---------
MYB46(3)
<---------
AtMYB61
<---------
ANAC58
<---------
MYB55(1)
<---------
ZAT6
<---------
ANAC58
<---------
MYB46(3)
--------->
TOE2(3)
--------->
ALFIN1
<---------
LBD16
<---------
AtMYB61
--------->
ARR14(2)
<---------
MYB46(3)
<---------
YAB1
<---------
ANAC58
<--------
P
<---------
ANAC46
<-
<---------
AtMYB61
<---------
AtMYB61
<-----------
RAV1(1)
<---------
MYB52(1)
<---------
ARR14(2)
<--
ttggtggtagtggtggtcttggtggtcttattgggggtcttgttgggggtctcggtggtctggttggtggtcttgtagggggtattctcaatctcgtcaa
5677100
>>>>>>>>>>>>>>>>>
LFY
<---------
At4g35610
<--------
P
<---------
ATHB12
<---------
At4g35610
<-------
GAMYB
<-----------
RAV1(1)
<----------
DOF2
-
--------
YAB1
<----------
DOF2
<---------
ZAT18
<---------
ALFIN1
--------->
At4g35610
<-------
-------
ARR11(3)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
------>
ZmHOX2a(1)
<----------
DOF2
<----------
DOF2
tatcaatggggttgtcttttgctctctcaatggtgctcccagtggcacttccactcctgctttcgcta
gtaagctttccattcttctactttcacctttg
5677200
------>
MYB83
<-----------
RAV1(1)
--------->
AtLEC2
<---------
TOE1(2)
<------
NtERF2
--------->
ANAC58
<---------
TOE2(3)
<---------
ANAC58
<------
--------->
ANAC58
<---------
ANAC46
<---------
ANAC46
-------
--------->
YAB1
<---------
ANAC58
<---------
ANAC58
--------
<---------
ATHB12
<---------
ICU4
=======================
RAV
--------->
YAB1
-------->
WOX13(1)
----------->
RAV1(1)
<---------
MYB52(1)
<---------
REM1(1)
<<<<<<<<<
ARR1
<
---
DOF2
------>
MYB46(1)
<---------
ANAC58
<-----------
RAV1(2)
<<<<<<<<<
ARR2
<---
atcaatcatgcaaaaccagcccaacaaaaattgcttaggttctgttaaccaggcgggttttgttgtagattatgtcaaatatacaatcgtacaaatgata
5677300
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AGI:
At3g16660.1
Description:
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G16670.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44793.1)
Range:
from: 5676835
to: 5677927
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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