AthaMap

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Position

Exon region

Intron region

UTR region

AGI

% Restriction to highly conserved TF binding sites (0-100)

1 10 20 30 40 50 60 70 80 90 100
--------->TOE2(3) <---------ARR14(2) --------->ARR14(2) <-----------HVH21 --------->WOX13(1) <----------DOF2 <------ZmHOX2a(1) ---------->DOF2 ----------->GT1 <---------DAG2 --------->LBD16 <---------------AGL15 --------->At4g35610 ------->HVH21 --------->HSFB2a(2) --------------->AGL15 ----------->RAV1(2) <------ ->HVH21 <---------HSFB2a(2) --------------->AGL15 <---------GLK1(2) <---------ATHB12 <--
tgacctttccttctacttcccagaggattccattctcaatctccttgtaagggaaagagtcagacagaagctcatcacctgtaaatcaatagcccagact	5670400
--- ------- <---------ATHB12 ---------->DOF2 ------>ZmHOX2a(2) --------->At4g35610 <---------ARR14(2) --------->TOE1(3) <---------At4g35610 --------->ARR11(3) --------->TOE2(3) --------->ARR14(2) <------ZmHOX2a(1) <---------ARR11(3) --------->ANAC58 <---------ARR14(2) ========= <---------ICU4 <------ZmHOX2a(2) --------->ANAC58 --------->GLK1(2) ========= ---GLK1(2)--------->YAB1 --------->TOE2(3) <---------KAN4(2) ------->TEIL <---------AHL20(2) --------DOF2 --------->ARR14(2) --------->ANAC46 XXXXXXXXXXXXXXXXXXXXX>MIR850 --------->AHL20(2)
ctttagtcattactcataagatcccaaacattaatcgatacaagcgaataaaccctaaaatccaatctacaacgaatcggtaagctcaattaaaggacgt	5670500
------>ZmHOX2a(2) <------ZmHOX2a(2) <---------ARR14(2) --------->ARR14(2) --------->AGP1 <-----------ARR10 --------->ARR11(3) <---------ARR11(3) <---------AGP1 <---------ANAC55(2) <---- <---------ATHB12 ------>MYB46(1) --------->AtLEC2 -------- ------>AHL20(2) <---------CCA1(2) <---------YAB1 ------->GAMYB ---->GT1 ------->TEIL ------>MYB83 --------->YAB1 <---------ATHB12 =========================HOX2a_HOX2a --------->CCA1(2) --------->At4g35610 -------- ==========================HOX2a_HOX2a ----------->ARR10 ---------->DOF2 --------->MYB52(1)
ttatatactaatgaatcacagatctaaccaaatcacataaactaatcccctaagatttgaattatcaatgcaaagagcagcaaatcaacgaaaaacctat	5670600
<-- --- --------- --------- <------ZmHOX2a(2) -------->ATHB1 <---------ARR14(2) <------ZmHOX2a(2) <---------ATHB51 <---------ARR11(3) <---------ARR11(3) <---------YAB1 --------->ARR11(3) <------ZmHOX2a(2) --------->ICU4 --------->ARR14(2) --------->ARR14(2) <------ZmHOX2a(1) ----------->HVH21 <---------ARR14(2) ============= -----ATHB12 ------>ZmHOX2a(2) --------->AHL20(2) --------->ARR11(3) ============= ->TOE2(2)<---------AGP1 --------->ATHB12 ---------->DOF2 <---------TOE1(3) ->TOE1(2)--------->AGP1 <---------YAB1 ------>ZmHOX2a(2) <---------ALFIN1 <---------TOE2(3)
gatgcgatgacagatctaacaattcgataacatgatttattccgatcggaagaaaaagatcgatagctacacagttcataccgagattaaggaattattg	5670700
------>MYB83 -------->P ----------->RAV1(1) ------>ZmHOX2a(2) <------ZmHOX2a(2) <---------ARR14(2) <---------ARR11(3) -------- <---------AGP1 ------>MYB46(1) <-------- --------->ARR14(2) <-------- <-----------ARR10 <---------HSFB2a(1) --------->ARR11(3) <---------HSFC1(2) <-----------HVH21 --------->AtMYB61 --------->HSFC1(2) -------->P <---------ARR14(3) --------->HSFB2a(1) --------->MYB52(1) --------->REM1(1) <---------TOE2(2) -------At4g35610 --------------->AtSPL8 <---------TOE1(3) ------>At4g35610 <xxxxxxxxxxxxxxxxxxxxx smallRNA(s2) <---------TOE1(2) >ATHB51 --------->ARR14(3) <-----------GT1 --------->ANAC46 <-------- >ATHB12 ----------->ARR10 <---------WOX13(1) --------->MYB52(1)<-------- =====================HOX2a_HOX2a --------->ATHB12 <---------MYB46(3) <---------TOE2(3) ======================HOX2a_HOX2a xxxxxxxxxxxxxxxx>smallRNA(i) <---------KAN4(2) <---------LBD16
agcttaccggtgagaagatcttggtacaccaacatggtcgcttattgattgttttctctctccgatggatgcgaataaacgaaaatcgaaggttgcggga	5670800
<---------ARR14(2) <---------GLK1(2) --------->ALFIN1 --------->TGA1a <---------TGA1a <---------O2 <---------At4g35610 --------->DEAR3(2) <------NtERF2 <------MYB46(1) --------->ANAC58 <------MYB83 --------->ANAC58 --------------->AGL15 --------->ANAC46 --------->GLK1(2) ----------->GT1 ----------->GT1 --------->CCA1(2)--------->ARR14(2)<---------TOE1(2) <---------TOE1(3) ->LBD16 --------->O2 <---------ZAT14 --------->MYB46(2) <---------TOE2(3) -ANAC46 ========================bZIP_bZIP <---------SPL7 ---- -LBD16 --------->At4g35610 ------>ZmHOX2a(1) <---------ANAC46 ----- -ANAC58 ----------->HVH21 <---------TGA1a --------->MYB59 <---------ANAC58 ------------>CBF -ANAC58 --------->DEAR3(1) --------->MYB59 *TSS <---------ANAC58 <-----------GT1
gagagacgcagcgacgaggggattctgaagtgaggtcctaagtttggtatttatagtcgaaactatagcgtagggttttcaggtaaatttacaattctcg	5670900
<---------AHL20(2) - <---------TOE2(3)----------->HVH21 <---------YAB1 --------->MYB52(1) --------->DEAR3(1) ------------>CBF <----------DOF2 --------->AHL20(2) <- <-----------GT1 ------------>CBF <-----------GT1 --------->AHL20(2) --------->DEAR3(2) ----->At5g28300 <-----------GT1 <-----------GT1 <---------AHL20(2) --------->MYB46(3) ------>GT1 <----------DOF2 <-----------GT1 <----------DOF2 ---------->DOF2 ------->TEIL <--
gtaaattacaattttgggctttaactgtttccaattttctattttttaccctttccttttttttaaataaaggaaataaatctgaaccgacgcttaatga	5671000
--------->ALFIN1 --------->MYB52(1)<---------ZAT6 ----------->HVH21 <-----------RAV1(1) <------MYB46(1) --------->ALFIN1 *TSS <------MYB83 >>>>>>>>>TAC1 <---------ZAT6 ------>ZmHOX2a(1) --------->MYB59 <---------ARR14(2) --------->AHL20(2) --------->AHL20(2) <---------AtMYB61 --------->ARR14(2) ----------->TBP ----------->GT1 <----- -------->LBD16 <------NtERF2 <---------ANAC55(2) <---------ANAC46 <---------ANAC58 --------ANAC46 --------->ALFIN1 <---------ANAC46 <-----------HVH21 <-------------- -------LBD16 <---------MYB46(3) --------->ANAC55(2) --------->ETT(1)<-----------GT1 <---------ANAC58
gccgggtttggtccaacgggtggggattcgagtgttgggctacgtataaatagtgttcgggtcggataaaatcctatttccctctcttctcttccgtctt	5671100
----------->GT1 <---------ANAC58 <---------ANAC58 <---------MYB46(3) --------->YAB1 <------MYB46(1) <---------WOX13(1) <---------YAB1 <------MYB83 -----DOF2 <---------YAB1 --------->YAB1 <----------DOF2 <-----------HVH21 ---- ----------ANAC81 <---------ANAC46 ----------->TGA1 <---------AtMYB61 ----
tctcgttctgtttctgattgttcgtgtaaaaccctagaatgacgatgatagctttgaacagggaggtcgaaactcagtcactgaaaaaactcagtctaaa	5671200
---------->DOF2 ------>ZmHOX2a(1) ----------->GT1 ------>ZmHOX2a(2) --------->ZAT2 --------->ARR14(2) <------- <---------ZAT2 <---------ARR14(2) <---------ANAC58 <---------MYB52(1) ----------->RAV1(2) --------->ARR14(2) <--- <-----------HVH21 <-----------HVH21 ------>ZmHOX2a(1) --------->WOX13(1) -------- ----->GLK1(2) --------->DEAR3(1)=================HOX2a_HOX2a <---------ARR14(2) <--- ----->ARR11(3) <-----------GT1 --------->TOE2(3) ----------->GT1 <---------ANAC58
atctgttagacgagctcgtgaaattttctcccccgtccatggccaatttcctcagcctgatcctgaaaggttaatcaacagtttcgcttgcaatgtccac	5671300

AGI:	At3g16640.1
Description:	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN). Identical to Translationally-controlled tumor protein homolog (TCTP) [Arabidopsis Thaliana] (GB:P31265;GB:Q8L973;GB:Q9LUS0); similar to translationally controlled tumor family protein [Arabidopsis thaliana] (TAIR:AT3G05540.1); similar to Translationally-controlled tumor protein homolog (TCTP) (GB:Q944W6); contains InterPro domain Mss4/translationally controlled tumour-associated TCTP (InterPro:IPR011323); contains InterPro domain Translationally controlled tumour-associated TCTP; (InterPro:IPR001983); contains InterPro domain Mss4-like (InterPro:IPR011057)
Range:	from: 5669379	to: 5670848	Orientation: Reverse
Links:	TAIR MIPS

AGI:	At3g16650.1
Description:	PP1/PP2A phosphatases pleiotropic regulator 2 (PRL2). Identical to PP1/PP2A phosphatases pleiotropic regulator PRL2 (PRL2) [Arabidopsis Thaliana] (GB:Q39190;GB:Q940Q7;GB:Q9LUR9); similar to PRL1 (PLEIOTROPIC REGULATORY LOCUS 1), nucleotide binding [Arabidopsis thaliana] (TAIR:AT4G15900.1); similar to hypothetical protein OsI_011169 [Oryza sativa (indica cultivar-group)] (GB:EAY89936.1); similar to PP1/PP2A phosphatases pleiotropic regulator PRL1, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95840.1); similar to unknown [Populus trichocarpa] (GB:ABK95731.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046);
Range:	from: 5671073	to: 5675330	Orientation: Forward
Links:	TAIR MIPS

Please cite the corresponding publications when using AthaMap.

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