Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                   <---------AHL20(2)                                                                                <---------AHL20(1)                                                                                --------->AHL20(2)                                                                                <---------AHL20(2)                            --------->ZAT14                                  <---------AHL20(2)                            <---------ZAT14                                 --------->AHL20(2)                   <---------ANAC58              --------->ANAC58           <---------AHL20(2)                   <---------ANAC58              --------->ANAC58       <---------YAB1                 --------->ARR11(3)              --------->ANAC46       <---------AHL20(2) ----->TOE2(3)   <---------AHL20(2)          --------->YAB1             --------->AHL20(2)          - -->P        <---------AHL20(2)       --------->TOE2(3)              <----------DOF2                < ->TEIL     --------->AHL20(2)  <---------------AtSPL8               <---------DAG2            ------   ctttgtactatcgttttaatttcttgttagtatagtagtaccttgaaacataagcaaaaacataaacagaactttttattaattttttttttggtagaaa  5644300                                   --------->YAB1                                   <-----------GT1               <---------AHL20(2)                            <---------AHL20(2)                   --------->AHL20(2)                            --------->AHL20(1)                   --------->AHL20(1)                            <---------AHL20(1)                   <---------AHL20(1)                            --------->AHL20(2)                  --------->AHL20(2)                           --------->AHL20(2)      <---------ZAT14                        <---------YAB1             --------->ZAT14                          <-------- -------->ZAT14      --------->GLK1(2)   --------->AHL20(2)     <---------AHL20(2) <---------ATHB51 ---------ZAT14   <---------YAB1  <---------YAB1   <---------ZAT18                 <---------AHL20(2) ---->DOF2      <-----------GT1 --------->YAB1     --------->ARR14(2)        ----------->GT1---------   agaacactgtatttctacttacgattctaataaattataacaatttaaaacagtatactttccaaaataaattagcaaaatgtaaattattcatttatat  5644400                                        <---------MYB46(3)                                        ----------->GT1                                        <------MYB83                                        <------MYB46(1)                                       --------->MYB111(1)                                       <---------MYB46(3)                                       <---------AtMYB61                                       <---------DEAR3(1)                                       --------->MYB55(2)                                       --------->MYB111(2)                                       --------->MYB46(2)                                      <--------P                                      <---------MYB55(1)                                     <-------GAMYB                                    <---------MYB46(3)                                    --------->ATHB12                                <----------DOF2                                    <------MYB83                            ------>MYB46(1)      <---                                    <------MYB46(1)                         ------>MYB83<---------TOE2(3)                                    --------->MYB55(2)                     ----------->RAV1(1)   ----                             <---------ANAC58                            --------->MYB46(3)    ------ ---------->DOF2             <---------ANAC46                      --------->DAG2--------->GLK1(2) -AHL20(2)         ----------->GT1 <---------AtMYB61              ---------->DOF2--------->ARR11(3) >AHL20(2) <-----------GT1   <---------ANAC58   <---------YAB1----------->GT1    <---------ARR11(3) >   aacaaaagaaattttactaatttgtaaaattgtgtggatggttggtgaatatgattttagtatatcgtaaaagtgaccaacaaaatctttaagaaaaaaa  5644500                                                                  --------->MYB52(1)                                                               <---------At4g35610                                                          ------>ZmHOX2a(2)                                                         <------ZmHOX2a(2)                                                         --------->CCA1(2)                                                        --------->AGP1                                                        --------->ARR14(2)                                                        <---------AGP1                                                        <---------ARR11(3)                                                        <---------ARR14(2)                                                        --------->ARR11(3)                                                       <---------CCA1(2)                          ---                                                    =============HOX2a_HOX2a                      ---                                                    ------>ZmHOX2a(1)      --------->ZAT18      <---- -------ID1                                        --------->TOE2(3)       <---------ZAT18    <------ ------->GT1                               --------->AHL20(2)  --------->At4g35610 ---------->DOF2--- ---->DOF2                           <---------ANAC46 ----------->ARR10 --------->DAG2--------->At4g35610 >>>>>>>>>GT-3b                     ---------->ID1 --------->TOE1(3)  ---------->DOF2 <---------At4g35610   agaaaaataagtagtggatgtctccatcaaaaacacttggcgcattaaaacatccttagatctgaagctaacaaaaggccacttgtaaagctgtctcttt  5644600  ------>NtERF2                                                            <----------DOF2 ------>ANAC58          <---------AHL20(2)                             <-----------GT1 ------>ANAC46       <---------ICU4                                ----------->TBP  <-----------GT1 -------GT1  <---------YAB1                                     <----------DOF2    <---------CCA1(2) ----DOF2----------->GT1<-----------GT1                    ------>ZmHOX2a(1)    <----------DOF2 ------>ANAC58    --------->YAB1  <----------DOF2     <---------At4g35610 <---------DAG2         <---   acgacaccaagtggtattattcgtaattacttccatctttcagtggcatttcattaagctccttctcttttaaaaaccttttcttttatctctctatctc  5644700                                                                                  <---------ERF1                                                                                  <---------DEAR4(2)                                                                                  ------>NtERF2                                                                                  <---------ATERF1(1)                                                                                  <---------ORA47(2)                                                                                  <---------RAP2.3(1)                                                                                 <---------ATERF1(2)                                                                                 <---------RAP2.3(2)                                                                                 --------->ATERF1(2)                                                                                 <---------RAP2.3(3)                                                                                 --------->DEAR3(1)                                                                                 <---------DEAR3(1)                                                                                 <---------ANAC46                                                                                <---------ABI4(1)                                                                                <------NtERF2                                                                                ------>NtERF2                                                                                --------->ATERF1(1)                                                                               <---------ATERF1(1)                                                                               --------->DEAR3(1)                                                                              --------->ATERF1(1)                                                                              --------->ALFIN1                                                                              <------NtERF2                                                                              <---------DEAR3(1)                                                                             ------>NtERF2                                                                             --------->ABI4(2)                                                                             <---------ABI4(1)                                                                            --------->DEAR3(1)                                                                           --------->ATERF1(1)                                                                          ------>NtERF2                                                                          --------->LBD16                                                                         <---------DEAR3(1)                                                                        <---------LBD16                                                                     --------->HSFC1(2)                        --------->At4g35610                          <---------HSFB2a(1)                        <---------At4g35610                          <---------HSFC1(2)             --------->ZAT18                                       --------->ARR14(2)             --------->ZAT14                                       <---------GLK1(2)    --------->ARR14(2)             <---------ZAT18          --------->REM1(2)            <---------ARR14(2)   <---------ARR14(2)          <---------ANAC58            --------->ZAT14            --------->LBD16--------->RAP2.3(1)          <---------ANAC58            <---------ZAT14           --------->HSFB2a(2)--------->RAP2.3(1)    *TSS  <---------ANAC46 ---------->DOF2                      <---------HSFB2a(2)<------NtERF2----- -------DOF2 <---------ZAT14     <---------ZAT14         <------ZmHOX2a(1)<---------ATERF1(1)   <----   tttcttcatagttcgtgcacagagagagctaaagctacagtgtacagaagaaaatgagaggactctccagaaactccggcgcggcggcgatattcgcgat  5644800                                    ------->TEIL                                    <---------ARR11(3)                                    <---------ARR14(2)                                    <-----------ARR10                                    <---------ARR11(1)                                    --------->ARR14(2)                                         ------                                   <---------ARR14(1)       --------->DEAR3(1)                 <-----                                   <---------CCA1(2)       <---------LBD16                   <------NtERF2                                <------NtERF2 <<<<<<<<<GATA-2                               ---------                               ------>NtERF2  <<<<<<<<<GATA-1          --------->ANAC46     <--------                              <---------DEAR3(1)      --------->ARR14(2)                    ------>NtERF2                             --------->ATERF1(1)      <---------ARR14(2)                   --------->DEAR3(1)         --------->ANAC46   <---------ATERF1(1)--------->MYB46(3) <---------GLK1(1)        <---------ANAC46  <---------ATHB12        --------->SPL7      <<<<<<<<<GATA-4 <------NtERF2               <---------- ---->GLK1(2)   --------->YAB1--------->DEAR3(1)  --------->ANAC46--------->GLK1(1)      --------->ZAT18 -------ARR10  <-------TEIL <-----------HVH21 <<<<<<<<<GATA-3--------->LBD16            --------->ALFIN1   tctactcattctcgccgttcataactggtccgtcgccgtatcttctcaatccaccgaattcgccggagatttccctccattcgaaacagagtgccgcggt  5644900                                ----------->HVH21                        ------>NtERF2                        --------->ABI4(1)                       --------->RAP2.3(2)                       --------->RAP2.3(3)                       --------->RAP2.6(2)                       --------->DREB2C(2)                       --------->RRTF1(3)                       --------->DEAR3(1)                       --------->RRTF1(2)                       <---------ALFIN1                      --------->RRTF1(1)                      --------->ERF1                      --------->ORA47(2)                <---------ANAC46                      --------->DEAR4(2)                <---------DEAR3(1)                      --------->RAP2.3(1)              <---------LBD16                      --------->ATERF1(1)            --------->ANAC46                     --------->LBD16                 <---------DEAR3(1)                     <---------At4g35610            <---------LBD16                     ------>NtERF2           =======================HOX2a_HOX2a                     <---------ATERF1(1)     =====================================HOX2a_HOX2a                     <---------RAP2.3(1)     ------>ZmHOX2a(2)                     --------->At4g35610   --------->ARR14(2)                    --------->ANAC46       --------->ARR11(3)                 <---------ARR14(2)        <---------ARR14(2)                                    <---          --------->ZAT14   <---------LBD16<---------ARR11(3)                                    ====      ------>NtERF2<---------LBD16        <---------GLK1(1)                ========================== --->At5g28300   --------->ARR14(2)       --------->GLK1(1)      --------->CCA1(2)              <---- ----SPL7 <---------ZAT14 --------->DEAR3(1)========================HOX2a_HOX2a                 ----- >LBD16   --------->ZAT18--------->ATERF1(1)<------ZmHOX2a(2)<------ZmHOX2a(1)   --------->HSFB2a(2)- -LBD16   <---------ZAT18<------NtERF2  <------ZmHOX2a(1) --------->ATERF1(1)    <---------HSFB2a(2)- -------------TaNAC69(2)<---------ATERF1(1)--------->AGP1 <------NtERF2    <------ZmHOX2a(1)   ------   acaattgccgagtgctctgtttccgccgccctcggagacggaggagatctattctacggcggaggagaaatgggagaggagttcgagatggactcagaga  5645000                                                                              ------>NtERF2                                                                              --------->RAP2.3(1)                                                                              <------NtERF2                                                                             <---------ATERF1(1)                                                                             --------->LBD16                                                                            <------NtERF2                                                                            --------->ATERF1(1)                                                                            <---------DEAR3(1)                                                                            <---------RAP2.3(2)                                                                           <---------LBD16                                                                        <-----------HVH21                                                                       --------->ANAC46      ------>NtERF2                                                    <---------TGA1a     <---------ANAC46                                                  --------->TGA1a    --------->RAP2.3(1)                     <----------CDC5            <---------O2   --------->LBD16                          =====================================MYC_MYB  --------->DEAR3(1)                       <---------At4g35610         <---------bZIP60(2)  ------->GAMYB                            --------->At4g35610         --------->bZIP60(1) --------->DEAR3(2)                      --------->ZAT18               --------->O2 --------->MYB46(3)              <---------At4g35610                   <---------bZIP60(1) ---ZmHOX2a(2)              --------->REM1(1)                   --------->LBD16 ============================HOX2a_HOX2a <---------ZAT18       <---------ANAC55(2)         <---------YAB1 ===HOX2a_HOX2a            <-------TEIL  --------->ZAT14       --------->ANAC55(2) --------->At4g35610 -----ARR11(3)         <---------------AtSPL3    <------ZmHOX2a(1)--------->ZAT2   <---------At4g35610 ---->ARR11(3)        <------ZmHOX2a(1)  <---------ZAT14       <---------ANAC58   ------->TEIL ------->P        <---------TOE2(1)  <-----------RAV1(1)       <---------ANAC55(1)<-----------ARR10 -------->MYB52(1)<---------TOE1(1)  <---------AtMYB61         <---------ANAC46 ------>NtERF2     <-- --->GLK1(1)  --------->At4g35610--------->At4g35610           <---------ANAC58 --------->ABI4(2) ---   tcaaccggcgcatattagctacgaggaggtacatcagctatggtgcgctgaggagaaacacaattccgtgctcacgtcgcggcgcatcttactacaattg  5645100                                                           ------>NtERF2                                                        <---------RRTF1(1)                                                        --------->LBD16                                                        <---------ERF1                                                        <---------RAP2.3(1)                                                        ------>NtERF2                                                        <---------ORA47(2)                                                       --------->DEAR3(1)                                                       <---------DEAR3(1)                                                       <---------ATERF1(2)                                                       --------->ATERF1(2)                                       --------->DEAR3(1)<------NtERF2            --------->ANAC58          --------->At4g35610--------->RAP2.3(1)            --------->ANAC58       <---------ZAT2      <---------RAP2.3(2)      <---------ANAC58      <---------ANAC58           <---------DREB2C(2)      <---------ANAC46      --------->O2               <---------RAP2.3(3)      <---------ANAC58      <---------ANAC58         <---------ATERF1(1)     <------NtERF2          <---------O2------>NtERF2------>NtERF2   --------->ALFIN1         --------->TGA1a          --------->ZAT2------->TEIL <---------O2               <---------TGA1a<-----------HVH21    <---------YAB1 <---------TGA1a     ------>ZmHOX2a(1)<---------At4g35610--------->ATERF1(1) --------->TGA1a   <---------ICU4  <---------ZAT14  --------->DEAR3(1) --------->O2     <---------ATHB12 --------->At4g35610<---------LBD16                               < <---------bZIP60(2)--------->TOE2(3)<---------ATERF1(1)<---------ATERF1(1)                  -------- -------ETT(2)   --------->ARR14(2)<------NtERF2    ----------->HVH21 --------->WOX13(1) --------->At5g28300 ------>ETT(2)   <---------ARR14(2)<---------At4g35610--------->ATERF1(1)    <-----------HVH21  <----   tcgacgtggcgctcaggccaatccttactctcgtggctgcagcgccatcactcgctgccggcgctcatgaatctatcactgtcagtctcactgtaattct  5645200  Previous    Next  AGI:  At3g16570.1    Description:  RALFL23 (RALF-LIKE 23). similar to RALFL33 (RALF-LIKE 33) [Arabidopsis thaliana] (TAIR:AT4G15800.1); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96369.1); contains InterPro domain Rapid ALkalinization Factor (InterPro:IPR008801) Range:  from: 5644704    to: 5645420    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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