Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                              <----------DOF2                          --------->ZAT18                        <---------PCF2                      --------->MYB55(2)                --------->MYB52(1)             --------->ANAC58  <---------AHL20(2)             --------->ANAC58 --------->AHL20(2)      xxxxxxxxxxxxxxxx>smallRNA(s)      <---------PCF2  --------->ABI4(2)    <---------TOE1(2) <---------DEAR3(1)                            <---------TOE1(2) <---------ANAC58     <---------MYB46(3)                      <---------ICU4 <---------MYB46(3)   <---------RAP2.3(3)                     --------->YAB1 <---------ANAC58    --------->ALFIN1                        <---------ATHB12       <---------STY1(2) ------AtMYB61  <---------ALFIN1                             --------->ICU4         --------->STY1(2) -GT1<---------DEAR3(2)<---------ATERF1(1)         <---------YAB1   <---------TOE2(2)              --   tggtcgtgggttcgaaccccacggtgggcgcattaatttttggcagttctcttatttttggcaataatcgtatgtttcaaatgagtagctagtggagaaa  5633000                                          <---------ARR14(2)                                          --------->ARR14(2)                                          ------->TEIL                                       --------->ANAC55(2)                                      <---------TOE1(3)                                      <---------TOE2(3)            --------->YAB1           <---------DOF5.7(2)         --------->WOX13(1)        --------->DOF5.7(2)        <---------AHL20(2)        --------->TOE1(3)        --------->AHL20(2)        <----------DOF2       <---------AHL20(2)         --------->TOE2(3)       --------->AHL20(2)     ------->GAMYB                                               <---------YAB1    --------->AHL20(2)       --------->MYB46(3)                                        <---------YAB1   <---------AHL20(2)        <---------MYB52(2)                               --------->ATHB12   --------->AHL20(2)     --------->MYB46(3)                                 <---------YAB1        -- ------->AHL20(2)       ----------->RAV1(1)            <------ZmHOX2a(1)     --------->ICU4      ----   cttaaataaataaatcaaaacagagccaacaacaaactttaacgtatccaaaacagaggagatggcttcaaaccaagttatgatgggttcttattagtcc  5633100                                                                                --------->ARR11(3)                                                                                <---------ARR11(3)                                                                            ---------->DOF2                                                                         --------->YAB1                                                                         -------->HAHB4                                      <---------ANAC58                  <---------YAB1           <---------TOE2(3)          <---------ANAC58                --------->YAB1          ---------->DOF2             <---------ANAC46                <---------ICU4        <---------YAB1                <---------LBD16                --------->ICU4         <--------   ----------->GT1             ---------->DOF2                     --------->YAB1        ------------ -------->DOF2      --------->HSFB2a(2)               --------->AHL20(2)--------->ICU4----------->HVH21 -->ZmHOX2a(1)      <---------HSFB2a(2)            --------->YAB1 --------->ICU4<---------GLK1(2)   taaaagagttattaaagtttttttagaactctaaaaagtttcgggcttcttaaaaataaaacacagaaatgataatgataaagattttctgaccaattgt  5633200                                                                             --------->YAB1                                                                             <---------ICU4                                                     <---------AHL20(2)     --------->ICU4                                                     --------->AHL20(2)     <---------YAB1                                                    --------->YAB1        --------->YAB1                                                    --------->AHL20(2)   --------->ICU4                                                --------->AHL20(2)     <---------ICU4                       --------->KAN4(2)        <---------AHL20(2)     --------->YAB1                    <---------ANAC58   --------->GLK1(2)              <---------ATHB12          <----      <---------AHL20(2)           ----------->TBP  <---------AHL20(2)--------->ICU4            <----      --------->AHL20(2)      <-----------GT1   --------->AHL20(1)------>ZmHOX2a(2)          <------- ----CBF   <-----------GT1 <----------DOF2     --------->AHL20(2) ------------>CBF    <------------CBF >CBF--------->YAB1 <---------ANAC58 <---------AHL20(2)   --------->ATHB12<---------ICU4   <---------   ccctctattaaaatcactatttgcttattctttaactatataatctgaaattaattaaaatcatttgatccaataatcatgataacaaaattgtgtcact  5633300                                                                                               ------                                                                                     <---------ALFIN1                                                                                    <---------ATERF1(1)                                                                                    <---------ALFIN1                                                                                   <---------ALFIN1                                                                           --------->WRKY45    ------                                                                           --------->WRKY12  <-------                                                                    <---------ARR14(2)       --------                                                                    <---------AGP1<---------ALFIN1                                                                    <-----------ARR10<---------ATERF1(1)                                                                    --------->ARR14(3)      ---------                                                                    --------->ARR11(3)    --------->ANAC46                                                                    --------->ARR14(2)   <---------ALFIN1                                                                    <---------ARR11(3)  <---------ALFIN1                    --------->AHL20(2)                  ------->GAMYB ------>ZmHOX2a(2)<---------ATERF1(1)       <---------ANAC46                     --------->ANAC58        <---------ARR14(3)<---------ALFIN1       ----------->GT1--------->YAB1        --------->ANAC58      ----------->ARR10--------->ANAC46 ------DOF2      <---------AHL20(2)       ==================================HOX2a_HOX2a<---------ALFIN1 -----DAG2       --------->AHL20(2)       ------>ZmHOX2a(1)---------->DOF2 --------->WRKY38(1) ------ ----GT1         --------->AHL20(1)       ===================================HOX2a_HOX2a<---------ATERF1(1) --HVH21    --------->AHL20(2) <-----------GT1         <----------ID1<------ZmHOX2a(2)<---------ATERF1(1)   tttctaatggagtataaaataaaataatagttgtttctcttctcctaagctactacaacgacaaagagaagatctcgttgactccccccccccccccaca  5633400                                                            --------->CCA1(2)                                                           --------->ARR11(3)                                                           <---------ARR11(3)                                                <---------At4g35610                                                --------->At4g35610 --->ANAC46                                     <---------ZAT2 --->ANAC58                         --------->At4g35610    <---------ARR14(2) --ALFIN1                           <---------At4g35610    --------->ARR14(2)         ------>ZmHOX2a(2) --->RAV1(1)                    <---------ARR14(2)     <------ZmHOX2a(1)<---------At4g35610 >ANAC46                   --------->MYB52(1)   --------->ZAT2<-----------GT1<---------ALFIN1 --->ANAC58   --------->AHL20(2)--------->ARR14(2)--------->ALFIN1      --------->At4g35610   caaaaaaaaaaaccaaaaaaatacagagctaatggttctgcttccatgggagctggaggaagatatactgtctcggcttccacctcgatctcttgttcaa  5633500                                                                   ------->MYC2                                                                   <-------PIF5                                                                   <-------MYC3                                                                   ------->PIF5                                                                   <-------MYC2                                                                   ------->MYC3                                                                 ------------>OsbHLH66                                                                <------------OsbHLH66                                                             --------->ZAT14    ------>ZmHOX2a(2)                                        <---------ZAT18   <------ZmHOX2a(2)               ----------->GT1    <------ZmHOX2a(1)                  <---------ICU4  --------->ARR14(2)              <---------TOE2(3) --------->ANAC58                    <---------YAB1  <---------ARR14(2)        <----------DOF2         --------->ANAC58         ------>ZmHOX2a(1)   ttcagatcggtttgcaaacgatggaatgctctttttgatgttaaaagtttcaacaaggaccagttcgctcgtgctcgtcctcagttcatcttcattaccg  5633600                                             --------->TOE1(2)                                            =====================================HOX2a_HOX2a                                            ------>ZmHOX2a(2)                                            --------->MYB46(3)                            --------->At5g28300                                     <---------ANAC46                                     --------->LBD16                                     <---------DEAR3(1)                                  ------------                                    <------NtERF2                                        <-----------                                   ------>NtERF2              ------->MYC4               <---------ANAC46                                  <---------DEAR3(1)          ------->MYC3              -------------                     <------ZmHOX2a(2)  --------->WRKY38(1)   <-------MYC3              -------------                    <---------ARR11(3)  --------->WRKY12      ------->MYC2              <------------                    --------->ARR11(3)<-------GAMYB           <-------MYC2             <---------At5g28300        <---------AHL20(2)        --------->ANAC46         <---------ANAC55(1) --------->GLK1(1)     --------->ARR11(3)        ----------->HVH21<---------ATHB12               <---------GLK1(1)     <---------ARR11(3)       <---------HSFB2a(2)         <-------TEIL    ------>ZmHOX2a(1)     -----   attccaagatttattcgatagagatcatcggtctcgacggcgttgatccaacgattaagttacatgtgctagactcctctggtatcccttaccgtgaatg  5633700         --------->ANAC55(2)     <---------ANAC58                                                                         -------     <---------ANAC58  <---------ANAC58                                                      <------- --->AGL15             <---------ANAC58                                                      <------- ----AGL15      <-----------HVH21                    <-----------GT1                         <------- ---->AGL1     --------->YAB1              <---------ANAC58                               <---------ARR14(2) ---->AG <---------ANAC55(2)               <---------ANAC58                               --------->ARR14(2) -----AGL1     ------->GAMYB            <------------------------ANAC81           <---------DAG2<---- ------>GT1   --------->MYB46(3)    <---------MYB52(1)                            <----------DOF2<---   gaaatttgcttacttaaccatcactgcttgcgatggccgatgggttcttgttttgtaactcttggattagtcccaagggaacagctttttggaatccgtg  5633800                                                                --------->YAB1                                                          --------->CCA1(2)                                                         <---------ARR14(2)                                                        <------ZmHOX2a(1)                                                      <---------TOE2(2)                                                      <---------TOE1(2)                                                     <------NtERF2                        <---------TOE1(1)           <---------SPL7 -->LBD16               <---------TOE2(1)          <---------ANAC58 --ANAC46          <---------------AtSPL3          <---------ANAC58                        <---------ARR14(3) --ANAC58          <---------------AtSPL8          <---------ANAC46                        --------->GLK1(2) --ANAC58--------->AHL20(2)      <---------TOE2(3)<-----------------------TaNAC69(2)       --------->ARR11(3) -----MYB46(3)    ------>ZmHOX2a(2)          ------->TEIL--------->ARR14(2)                <---------ARR11(3) ----GAMYB<---------AHL20(2)   ---------->DOF2<-----------RAV1(1) --------->ZAT6           --------->ARR14(3)   gttgaaacagattaaatggatcgagtacgagaataaaggtttcaatgtatgtggcgtaggatacgataatactaggcctgagaaggtttacaaaatcttg  5633900  Previous    Next  AGI:  At3g16552.1    Description:  pre-tRNA. tRNA-Lys (anticodon: CTT) Range:  from: 5632858    to: 5632930    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g16555.1    Description:  F-box family protein. Identical to Putative F-box/LRR-repeat protein At3g16555 [Arabidopsis Thaliana] (GB:Q9LUS9); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G51171.1); similar to unknown [Arabidopsis lyrata] (GB:AAL65603.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain F-box associated type 1 (InterPro:IPR006527) Range:  from: 5633432    to: 5634548    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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